Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006648

Physical Location & Seq

Genomic Coordinates Forward (+)

2926292 .. 2929582

Gene Structure 3291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05060.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTCTTGTCGATTTCAAATCAGCAAATTGGAATTTAGCAACGAAGTTCTTGATTGCCACAGGCCAATAAATGTACGATGGGATTCATCGACTATGAAGCCCGCCAAGGAACATTCAAAGAAACTAGGCGTACCGGCAGGTGTTCGTTGCAGTCATATACCTTCATTCACTGAAAACAAAAGTAACGAAAACGATTACTACGAACATACTAGAGCCTCCTACTTTGGATTCACACGAAAGGTTTTGTCCCCGGAAACCATCAGTATCGAACCAAGTTCATTTCGAAGCGTCAAGCTATCTACGGAGGATCTTGAACTACTCAACTCCCCTTCATCGGAAGTCTCTTCGATTTGTCAGGAACATGAGGCCAAACCGGGGATTCTTCATGATCATGTTTTTCCCGGAAAAGAAGTGGGGGTGACAGAACAAGAAGAACTAGATGATGAAGATGATGATGAAGAAGATGACGATGATGATGAAGATGAAGTAATGAGCTCGTATGTGATTGAGATCAATTCTGACCACAGAGAGGGTACATATGAAGAAGTTAACCTTGAAGAAGCAATTGCTTGGGCTAAAGAGAAGTTTCAAACGCATAGTGCTTCTGAAAAGGAATCAAGCATGACAGCTCATGATCACAATGAACAGTCCATTGAATTGGAAGAAGGAAGGCCTAATGTGGATGAATGCTTGGATCGACAGAGAGATGAACACGAAATGACTAGAACTCCTGAGATGGAGCTGGAGTTCTTGGATGAAGACGTAAGGTTATGGTCAGCTGGGAAGGAATCGAACATTCGCATGCTTCTTTCAACACTGGAGCAGATTCTATGGCCCAACAGTGGATGGTATACAATACCTCTGACAAGCCTAATAGAAAGTTCACAGGTCAAGAAAGCCTATCAAAAGGCAAGACTGTGTCTCCACCCTGACAAACTGCAACAAAGATCAGCAACACCAGCTCAAAAATATGTTGCTCAGAAAGCTTTCGCCATTCTACAGGATGCATGGGAATTATTCATCTCCCAAGATGTGTTCATTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

349

Amino Acids

40.03

Weight (kDa)

4.64

Isoelectric Point (pI)

61.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30280 AT1G30280 AT1G30280
fragaria_vesca	FvH4_3g05060 FvH4_3g05060 FvH4_3g05060 FvH4_3g05060
malus_domestica	MD05G1279900.v1.1 MD10G1258400.v1.1
prunus_persica	Prupe.4G085400_v2.0.a1 Prupe.4G085400_v2.0.a1
pyrus_communis	pycom05g26010 pycom10g21470 pycom10g21480
rosa_chinensis	RchiOBHm_Chr5g0014901
rosa_laevigata	RLG00000032149
rosa_multiflora	Rmu_sc0013610.1_g000003
rosa_roxburghii	Rroxscaffold_1G00061670
rosa_rugosa	Rorug05G0021100.1 Rorug05G0021200
rosa_samantha	Rh5AG117000 Rh5BG113400 Rh5BG114000 Rh5CG125500 Rh5DG113400
rosa_wichuraiana	Rw5G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	128
AccI	GTMKAC	1 cut(s)	851
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	2 cut(s)	315, 702
AcsI	RAATTY	1 cut(s)	32
AfaI	GTAC	3 cut(s)	75, 132, 535
AfiI	CCNNNNNNNGG	4 cut(s)	334, 375, 529, 842
AgsI	TTSAA	7 cut(s)	17, 117, 314, 557, 590, 656, 813
AloI	GAACNNNNNNTCC	2 cut(s)	731, 763
AluBI	AGCT	7 cut(s)	295, 495, 629, 742, 779, 962, 986
AluI	AGCT	7 cut(s)	295, 495, 629, 742, 779, 962, 986
Alw21I	GWGCWC	1 cut(s)	497
Alw26I	GTCTC	2 cut(s)	346, 926
AlwI	GGATC	2 cut(s)	315, 702
AoxI	GGCC	4 cut(s)	62, 366, 671, 833
ApoI	RAATTY	1 cut(s)	32
Asp700I	GAANNNNTTC	1 cut(s)	986
AspS9I	GGNCC	1 cut(s)	834
AsuC2I	CCSGG	3 cut(s)	251, 375, 402
AsuHPI	GGTGA	1 cut(s)	430
AsuII	TTCGAA	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	765
Bbv12I	GWGCWC	1 cut(s)	497
BccI	CCATC	4 cut(s)	72, 266, 730, 840
BclI	TGATCA	2 cut(s)	388, 634
BcnI	CCSGG	3 cut(s)	251, 375, 402
BcoDI	GTCTC	2 cut(s)	346, 926
BfaI	CTAG	5 cut(s)	125, 210, 437, 723, 1045
BfmI	CTRYAG	1 cut(s)	998
BfuAI	ACCTGC	1 cut(s)	128
Bme1390I	CCNGG	3 cut(s)	251, 375, 402
BmgT120I	GGNCC	1 cut(s)	834
BmrFI	CCNGG	3 cut(s)	251, 375, 402
BmsI	GCATC	1 cut(s)	994
BpiI	GAAGAC	1 cut(s)	765
BpmI	CTGGAG	2 cut(s)	764, 839
Bpu14I	TTCGAA	1 cut(s)	283
BpuMI	CCSGG	3 cut(s)	251, 375, 402
BsaBI	GATNNNNATC	1 cut(s)	509
BsaJI	CCNNGG	3 cut(s)	105, 249, 374
BsaXI	ACNNNNNCTCC	6 cut(s)	712, 731, 742, 761, 906, 936
Bsc4I	CCNNNNNNNGG	4 cut(s)	334, 375, 529, 842
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	822
Bse8I	GATNNNNATC	1 cut(s)	509
BseDI	CCNNGG	3 cut(s)	105, 249, 374
BseGI	GGATG	4 cut(s)	688, 760, 851, 1009
BseJI	GATNNNNATC	1 cut(s)	509
BseLI	CCNNNNNNNGG	4 cut(s)	334, 375, 529, 842
BseMII	CTCAG	2 cut(s)	723, 992
BseNI	ACTGG	1 cut(s)	822
BseYI	CCCAGC	1 cut(s)	779
BshFI	GGCC	4 cut(s)	64, 368, 673, 835
BsiHKAI	GWGCWC	1 cut(s)	497
BsiSI	CCGG	4 cut(s)	134, 251, 374, 402
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	4 cut(s)	334, 375, 529, 842
BsmAI	GTCTC	2 cut(s)	346, 926
BsmFI	GGGAC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	692
BsnI	GGCC	4 cut(s)	64, 368, 673, 835
Bsp119I	TTCGAA	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp143I	GATC	6 cut(s)	307, 388, 510, 634, 694, 947
BspACI	CCGC	1 cut(s)	102
BspANI	GGCC	4 cut(s)	64, 368, 673, 835
BspCNI	CTCAG	2 cut(s)	724, 991
BspHI	TCATGA	2 cut(s)	385, 631
BspMI	ACCTGC	1 cut(s)	128
BspPI	GGATC	2 cut(s)	315, 702
BspT104I	TTCGAA	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	822
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	3 cut(s)	105, 249, 374
BssMI	GATC	6 cut(s)	307, 388, 510, 634, 694, 947
BssNAI	GTATAC	1 cut(s)	852
BssT1I	CCWWGG	1 cut(s)	105
Bst1107I	GTATAC	1 cut(s)	852
Bst4CI	ACNGT	3 cut(s)	648, 842, 918
Bst6I	CTCTTC	1 cut(s)	349
BstBI	TTCGAA	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	102, 803
BstDEI	CTNAG	2 cut(s)	732, 978
BstF5I	GGATG	4 cut(s)	688, 760, 851, 1009
BstKTI	GATC	6 cut(s)	310, 391, 513, 637, 697, 950
BstMAI	GTCTC	2 cut(s)	346, 926
BstMBI	GATC	6 cut(s)	307, 388, 510, 634, 694, 947
BstMWI	GCNNNNNNNGC	2 cut(s)	959, 983
BstNSI	RCATGY	1 cut(s)	805
BstSCI	CCNGG	3 cut(s)	249, 373, 400
BstSFI	CTRYAG	1 cut(s)	998
BstV2I	GAAGAC	1 cut(s)	765
BstX2I	RGATCY	1 cut(s)	307
BstXI	CCANNNNNNTGG	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	307
BstZ17I	GTATAC	1 cut(s)	852
BsuRI	GGCC	4 cut(s)	64, 368, 673, 835
BtsCI	GGATG	4 cut(s)	688, 760, 851, 1009
BtsIMutI	CAGTG	3 cut(s)	168, 815, 847
BveI	ACCTGC	1 cut(s)	128
Cac8I	GCNNGC	2 cut(s)	102, 803
CciI	TCATGA	2 cut(s)	385, 631
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	834
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	3 cut(s)	74, 131, 534
CviAII	CATG	7 cut(s)	362, 386, 392, 622, 632, 802, 1008
CviQI	GTAC	3 cut(s)	74, 131, 534
DdeI	CTNAG	2 cut(s)	732, 978
DpnI	GATC	6 cut(s)	309, 390, 512, 636, 696, 949
DpnII	GATC	6 cut(s)	307, 388, 510, 634, 694, 947
Eam1104I	CTCTTC	1 cut(s)	349
EarI	CTCTTC	1 cut(s)	349
Ecl136II	GAGCTC	1 cut(s)	495
Eco130I	CCWWGG	1 cut(s)	105
Eco147I	AGGCCT	1 cut(s)	673
Eco24I	GRGCYC	1 cut(s)	497
Eco53kI	GAGCTC	1 cut(s)	495
EcoICRI	GAGCTC	1 cut(s)	495
EcoT14I	CCWWGG	1 cut(s)	105
EcoT22I	ATGCAT	1 cut(s)	1009
EcoT38I	GRGCYC	1 cut(s)	497
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	7 cut(s)	365, 389, 395, 625, 635, 805, 1011
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	7 cut(s)	361, 385, 391, 621, 631, 801, 1007
FauI	CCCGC	1 cut(s)	109
FauNDI	CATATG	1 cut(s)	538
FbaI	TGATCA	2 cut(s)	388, 634
FblI	GTMKAC	1 cut(s)	851
FokI	GGATG	4 cut(s)	695, 767, 858, 1016
FriOI	GRGCYC	1 cut(s)	497
FspBI	CTAG	5 cut(s)	125, 210, 437, 723, 1045
GsaI	CCCAGC	1 cut(s)	783
GsuI	CTGGAG	2 cut(s)	764, 839
HaeIII	GGCC	4 cut(s)	64, 368, 673, 835
HapII	CCGG	4 cut(s)	134, 251, 374, 402
HgaI	GACGC	1 cut(s)	277
Hin1II	CATG	7 cut(s)	365, 389, 395, 625, 635, 805, 1011
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	984
HinfI	GANTC	6 cut(s)	83, 228, 379, 614, 788, 826
HpaI	GTTAAC	1 cut(s)	550
HpaII	CCGG	4 cut(s)	134, 251, 374, 402
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	3 cut(s)	550, 852, 884
Hpy188I	TCNGA	5 cut(s)	337, 520, 607, 864, 981
Hpy188III	TCNNGA	7 cut(s)	50, 311, 356, 386, 632, 731, 892
Hpy8I	GTNNAC	3 cut(s)	550, 852, 884
HpyAV	CCTTC	5 cut(s)	171, 339, 659, 663, 778
HpyCH4III	ACNGT	3 cut(s)	648, 842, 918
HpyCH4IV	ACGT	1 cut(s)	762
HpyCH4V	TGCA	3 cut(s)	150, 940, 1007
HpyF10VI	GCNNNNNNNGC	2 cut(s)	959, 983
HpyF3I	CTNAG	2 cut(s)	732, 978
HpySE526I	ACGT	1 cut(s)	762
Hsp92II	CATG	7 cut(s)	365, 389, 395, 625, 635, 805, 1011
Ksp22I	TGATCA	2 cut(s)	388, 634
KspAI	GTTAAC	1 cut(s)	550
Kzo9I	GATC	6 cut(s)	307, 388, 510, 634, 694, 947
LmnI	GCTCC	2 cut(s)	739, 820
LweI	GCATC	1 cut(s)	994
MaeI	CTAG	5 cut(s)	125, 210, 437, 723, 1045
MaeII	ACGT	1 cut(s)	762
MaeIII	GTNAC	2 cut(s)	182, 418
MalI	GATC	6 cut(s)	309, 390, 512, 636, 696, 949
MboI	GATC	6 cut(s)	307, 388, 510, 634, 694, 947
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	497
MluCI	AATT	6 cut(s)	26, 32, 514, 564, 656, 1013
MnlI	CCTC	5 cut(s)	226, 298, 358, 523, 870
Mph1103I	ATGCAT	1 cut(s)	1009
MroXI	GAANNNNTTC	1 cut(s)	986
MseI	TTAA	1 cut(s)	549
MslI	CAYNNNNRTG	2 cut(s)	390, 800
MspA1I	CMGCKG	1 cut(s)	779
MspI	CCGG	4 cut(s)	134, 251, 374, 402
MspR9I	CCNGG	3 cut(s)	251, 375, 402
MunI	CAATTG	1 cut(s)	564
Mva1269I	GAATGC	1 cut(s)	692
MwoI	GCNNNNNNNGC	2 cut(s)	959, 983
NciI	CCSGG	3 cut(s)	251, 375, 402
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	6 cut(s)	307, 388, 510, 634, 694, 947
NlaIII	CATG	7 cut(s)	365, 389, 395, 625, 635, 805, 1011
NmuCI	GTSAC	1 cut(s)	418
NsiI	ATGCAT	1 cut(s)	1009
NspI	RCATGY	1 cut(s)	805
NspV	TTCGAA	1 cut(s)	283
PaeI	GCATGC	1 cut(s)	805
PagI	TCATGA	2 cut(s)	385, 631
PaqCI	CACCTGC	1 cut(s)	128
PceI	AGGCCT	1 cut(s)	673
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	1 cut(s)	692
PdmI	GAANNNNTTC	1 cut(s)	986
PfeI	GAWTC	6 cut(s)	83, 228, 379, 614, 788, 826
PflFI	GACNNNGTC	1 cut(s)	918
PfoI	TCCNGGA	1 cut(s)	400
Psp124BI	GAGCTC	1 cut(s)	497
PspFI	CCCAGC	1 cut(s)	779
PspPI	GGNCC	1 cut(s)	834
PsuI	RGATCY	1 cut(s)	307
PsyI	GACNNNGTC	1 cut(s)	918
PvuII	CAGCTG	1 cut(s)	779
RsaI	GTAC	3 cut(s)	75, 132, 535
RsaNI	GTAC	3 cut(s)	74, 131, 534
RseI	CAYNNNNRTG	2 cut(s)	390, 800
SacI	GAGCTC	1 cut(s)	497
SaqAI	TTAA	1 cut(s)	549
Sau3AI	GATC	6 cut(s)	307, 388, 510, 634, 694, 947
Sau96I	GGNCC	1 cut(s)	834
ScrFI	CCNGG	3 cut(s)	251, 375, 402
SduI	GDGCHC	1 cut(s)	497
SfaNI	GCATC	1 cut(s)	994
SfcI	CTRYAG	1 cut(s)	998
SfuI	TTCGAA	1 cut(s)	283
SmiMI	CAYNNNNRTG	2 cut(s)	390, 800
SphI	GCATGC	1 cut(s)	805
Sse9I	AATT	6 cut(s)	26, 32, 514, 564, 656, 1013
SseBI	AGGCCT	1 cut(s)	673
SsiI	CCGC	1 cut(s)	102
SspMI	CTAG	5 cut(s)	125, 210, 437, 723, 1045
SstI	GAGCTC	1 cut(s)	497
StuI	AGGCCT	1 cut(s)	673
StyD4I	CCNGG	3 cut(s)	249, 373, 400
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	3 cut(s)	648, 842, 918
TaiI	ACGT	1 cut(s)	765
TaqI	TCGA	7 cut(s)	10, 89, 267, 283, 347, 697, 791
TasI	AATT	6 cut(s)	26, 32, 514, 564, 656, 1013
TfiI	GAWTC	6 cut(s)	83, 228, 379, 614, 788, 826
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	3 cut(s)	175, 822, 847
TseFI	GTSAC	1 cut(s)	418
Tsp45I	GTSAC	1 cut(s)	418
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	3 cut(s)	175, 822, 847
Tth111I	GACNNNGTC	1 cut(s)	918
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	1 cut(s)	805
XmiI	GTMKAC	1 cut(s)	851
XmnI	GAANNNNTTC	1 cut(s)	986
XspI	CTAG	5 cut(s)	125, 210, 437, 723, 1045
Zsp2I	ATGCAT	1 cut(s)	1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.