Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006648

Physical Location & Seq

Genomic Coordinates Reverse (-)

10630904 .. 10635051

Gene Structure 4148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG113400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGACAGCTCATGATCCCAATGAGCAGTCCATTACAATGGATGAAGGAAGGCCTCAGGATCTATGCTCGGATCAACAGAGAGATGAACACGAAATGACTAGAACTCCCCAGGATGAAGACAGAACATGGTTAGGTGAAGATGAAAAGCAACATTCAGAAAAAGATATGGAACTGGAGTTCTTGGATGAAGACATAAGGTTATGGTCAGCTGGGAAGGAATCGAACATTCGCATGCTTCTTTCAACACTACACCAGATTCTATGGCCCAATAGTGGTTGGTATACAATACCTCTGACAAGCCTAATAGAAAGTTCACAAGTCAAGAAAGCCTATCAAAAGGCAAGGCTATGTCTCCACCCTGACAAACTGCAACAAAGATCAGCAACACCAGCTCAAAAGTATGTTGCTGAGAAAGCTTTCTCCATCCTCCAGGATGCATGGGCAGTATTCATCTCCCAAGATGTTTTCATTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

18.42

Weight (kDa)

4.81

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30280 AT1G30280 AT1G30280
fragaria_vesca	FvH4_3g05060 FvH4_3g05060 FvH4_3g05060 FvH4_3g05060
malus_domestica	MD05G1279900.v1.1 MD10G1258400.v1.1
prunus_persica	Prupe.4G085400_v2.0.a1 Prupe.4G085400_v2.0.a1
pyrus_communis	pycom05g26010 pycom10g21470 pycom10g21480
rosa_chinensis	RchiOBHm_Chr5g0014901
rosa_laevigata	RLG00000032149
rosa_multiflora	Rmu_sc0013610.1_g000003
rosa_roxburghii	Rroxscaffold_1G00061670
rosa_rugosa	Rorug05G0021100.1 Rorug05G0021200
rosa_samantha	Rh5AG117000 Rh5BG113400 Rh5BG114000 Rh5CG125500 Rh5DG113400
rosa_wichuraiana	Rw5G010070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	281
AclWI	GGATC	3 cut(s)	8, 66, 78
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	1 cut(s)	243
AjnI	CCWGG	2 cut(s)	108, 429
AloI	GAACNNNNNNTCC	2 cut(s)	161, 193
AluBI	AGCT	4 cut(s)	8, 209, 392, 416
AluI	AGCT	4 cut(s)	8, 209, 392, 416
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	3 cut(s)	8, 66, 78
AoxI	GGCC	2 cut(s)	50, 263
Asp700I	GAANNNNTTC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	146
AxyI	CCTNAGG	1 cut(s)	54
BbsI	GAAGAC	2 cut(s)	123, 195
BccI	CCATC	1 cut(s)	431
BciT130I	CCWGG	2 cut(s)	110, 431
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	2 cut(s)	99, 475
Bme1390I	CCNGG	2 cut(s)	110, 431
BmgT120I	GGNCC	1 cut(s)	264
BmrFI	CCNGG	2 cut(s)	110, 431
BmsI	GCATC	1 cut(s)	424
BpiI	GAAGAC	2 cut(s)	123, 195
BpmI	CTGGAG	2 cut(s)	194, 413
BsaJI	CCNNGG	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	177
Bse21I	CCTNAGG	1 cut(s)	54
BseBI	CCWGG	2 cut(s)	110, 431
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	5 cut(s)	46, 118, 190, 423, 439
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	2 cut(s)	68, 399
BseNI	ACTGG	1 cut(s)	177
BseYI	CCCAGC	1 cut(s)	209
BshFI	GGCC	2 cut(s)	52, 265
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	52, 265
Bsp143I	GATC	4 cut(s)	13, 58, 70, 377
BspANI	GGCC	2 cut(s)	52, 265
BspCNI	CTCAG	2 cut(s)	67, 400
BspHI	TCATGA	1 cut(s)	10
BspPI	GGATC	3 cut(s)	8, 66, 78
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	4 cut(s)	13, 58, 70, 377
BssNAI	GTATAC	1 cut(s)	282
Bst1107I	GTATAC	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	110, 431
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	2 cut(s)	54, 408
BstF5I	GGATG	5 cut(s)	46, 118, 190, 423, 439
BstKTI	GATC	4 cut(s)	16, 61, 73, 380
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	4 cut(s)	13, 58, 70, 377
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 413
BstNI	CCWGG	2 cut(s)	110, 431
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	2 cut(s)	108, 429
BstV2I	GAAGAC	2 cut(s)	123, 195
BstX2I	RGATCY	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	58
BstZ17I	GTATAC	1 cut(s)	282
Bsu36I	CCTNAGG	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	52, 265
BtsCI	GGATG	5 cut(s)	46, 118, 190, 423, 439
Cac8I	GCNNGC	1 cut(s)	233
CciI	TCATGA	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	264
CviAII	CATG	4 cut(s)	11, 126, 232, 438
CviJI	RGCY	9 cut(s)	8, 52, 209, 265, 300, 329, 346, 392, 416
CviKI_1	RGCY	9 cut(s)	8, 52, 209, 265, 300, 329, 346, 392, 416
DdeI	CTNAG	2 cut(s)	54, 408
DpnI	GATC	4 cut(s)	15, 60, 72, 379
DpnII	GATC	4 cut(s)	13, 58, 70, 377
Eco147I	AGGCCT	1 cut(s)	52
Eco81I	CCTNAGG	1 cut(s)	54
EcoRII	CCWGG	2 cut(s)	108, 429
EcoT22I	ATGCAT	1 cut(s)	439
FaeI	CATG	4 cut(s)	14, 129, 235, 441
FatI	CATG	4 cut(s)	10, 125, 231, 437
FblI	GTMKAC	1 cut(s)	281
FokI	GGATG	5 cut(s)	53, 125, 197, 410, 446
FspBI	CTAG	2 cut(s)	99, 475
GsaI	CCCAGC	1 cut(s)	213
GsuI	CTGGAG	2 cut(s)	194, 413
HaeIII	GGCC	2 cut(s)	52, 265
Hin1II	CATG	4 cut(s)	14, 129, 235, 441
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	2 cut(s)	218, 256
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	282, 314
Hpy188I	TCNGA	3 cut(s)	70, 157, 294
Hpy188III	TCNNGA	3 cut(s)	11, 56, 322
Hpy8I	GTNNAC	2 cut(s)	282, 314
HpyAV	CCTTC	3 cut(s)	38, 42, 208
HpyCH4V	TGCA	2 cut(s)	370, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 413
HpyF3I	CTNAG	2 cut(s)	54, 408
Hsp92II	CATG	4 cut(s)	14, 129, 235, 441
Kzo9I	GATC	4 cut(s)	13, 58, 70, 377
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	2 cut(s)	99, 475
MalI	GATC	4 cut(s)	15, 60, 72, 379
MboI	GATC	4 cut(s)	13, 58, 70, 377
MboII	GAAGA	3 cut(s)	128, 149, 200
MflI	RGATCY	1 cut(s)	58
MnlI	CCTC	3 cut(s)	63, 300, 437
Mph1103I	ATGCAT	1 cut(s)	439
MroXI	GAANNNNTTC	1 cut(s)	416
MslI	CAYNNNNRTG	2 cut(s)	35, 230
MspA1I	CMGCKG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	110, 431
MvaI	CCWGG	2 cut(s)	110, 431
MwoI	GCNNNNNNNGC	2 cut(s)	389, 413
NdeII	GATC	4 cut(s)	13, 58, 70, 377
NlaIII	CATG	4 cut(s)	14, 129, 235, 441
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	1 cut(s)	235
PaeI	GCATGC	1 cut(s)	235
PagI	TCATGA	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	218, 256
PfoI	TCCNGGA	1 cut(s)	429
Psp6I	CCWGG	2 cut(s)	108, 429
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	2 cut(s)	108, 429
PspPI	GGNCC	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	209
RseI	CAYNNNNRTG	2 cut(s)	35, 230
Sau3AI	GATC	4 cut(s)	13, 58, 70, 377
Sau96I	GGNCC	1 cut(s)	264
ScrFI	CCNGG	2 cut(s)	110, 431
SetI	ASST	7 cut(s)	10, 136, 200, 211, 292, 394, 418
SfaNI	GCATC	1 cut(s)	424
SmiMI	CAYNNNNRTG	2 cut(s)	35, 230
SphI	GCATGC	1 cut(s)	235
SseBI	AGGCCT	1 cut(s)	52
SspMI	CTAG	2 cut(s)	99, 475
StuI	AGGCCT	1 cut(s)	52
StyD4I	CCNGG	2 cut(s)	108, 429
TaqI	TCGA	1 cut(s)	221
TfiI	GAWTC	2 cut(s)	218, 256
TspDTI	ATGAA	7 cut(s)	57, 99, 129, 156, 201, 439, 457
XceI	RCATGY	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	2 cut(s)	99, 475
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.