DnaJ molecular chaperone homology domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G30280 AT1G30280 AT1G30280 |
| fragaria_vesca | FvH4_3g05060 FvH4_3g05060 FvH4_3g05060 FvH4_3g05060 |
| malus_domestica | MD05G1279900.v1.1 MD10G1258400.v1.1 |
| prunus_persica | Prupe.4G085400_v2.0.a1 Prupe.4G085400_v2.0.a1 |
| pyrus_communis | pycom05g26010 pycom10g21470 pycom10g21480 |
| rosa_chinensis | RchiOBHm_Chr5g0014901 |
| rosa_laevigata | RLG00000032149 |
| rosa_multiflora | Rmu_sc0013610.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00061670 |
| rosa_rugosa | Rorug05G0021100.1 Rorug05G0021200 |
| rosa_samantha | Rh5AG117000 Rh5BG113400 Rh5BG114000 Rh5CG125500 Rh5DG113400 |
| rosa_wichuraiana | Rw5G010070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 23 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 610 |
| AccII | CGCG | 7 cut(s) | 49, 98, 166, 181, 195, 251, 816 |
| AclWI | GGATC | 3 cut(s) | 122, 334, 819 |
| AcoI | YGGCCR | 4 cut(s) | 99, 227, 340, 437 |
| AcsI | RAATTY | 2 cut(s) | 235, 285 |
| AcuI | CTGAAG | 2 cut(s) | 1146, 1164 |
| AfaI | GTAC | 4 cut(s) | 174, 408, 501, 1061 |
| AfeI | AGCGCT | 1 cut(s) | 365 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 446, 610, 807, 1280, 1366 |
| AgsI | TTSAA | 3 cut(s) | 938, 971, 1097 |
| AjiI | CACGTC | 1 cut(s) | 457 |
| AjnI | CCWGG | 2 cut(s) | 37, 1437 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 912, 944, 1457 |
| Alw21I | GWGCWC | 7 cut(s) | 69, 83, 416, 644, 747, 884, 1188 |
| Alw26I | GTCTC | 1 cut(s) | 772 |
| AlwI | GGATC | 3 cut(s) | 122, 334, 819 |
| Ama87I | CYCGRG | 1 cut(s) | 367 |
| Aor51HI | AGCGCT | 1 cut(s) | 365 |
| AoxI | GGCC | 8 cut(s) | 40, 99, 227, 340, 371, 437, 1271, 1422 |
| ApeKI | GCWGC | 3 cut(s) | 92, 1075, 1243 |
| ApoI | RAATTY | 2 cut(s) | 235, 285 |
| AseI | ATTAAT | 1 cut(s) | 32 |
| AspLEI | GCGC | 5 cut(s) | 18, 24, 57, 183, 366 |
| AspS9I | GGNCC | 3 cut(s) | 158, 698, 1272 |
| AsuC2I | CCSGG | 2 cut(s) | 802, 1367 |
| AsuHPI | GGTGA | 3 cut(s) | 744, 1339, 1420 |
| AsuII | TTCGAA | 1 cut(s) | 479 |
| AvaI | CYCGRG | 1 cut(s) | 367 |
| AvaII | GGWCC | 2 cut(s) | 158, 698 |
| BanII | GRGCYC | 6 cut(s) | 83, 416, 644, 747, 884, 1188 |
| BauI | CACGAG | 2 cut(s) | 76, 212 |
| BbsI | GAAGAC | 3 cut(s) | 393, 1152, 1203 |
| Bbv12I | GWGCWC | 7 cut(s) | 69, 83, 416, 644, 747, 884, 1188 |
| BbvCI | CCTCAGC | 1 cut(s) | 760 |
| BbvI | GCAGC | 3 cut(s) | 79, 1087, 1230 |
| BccI | CCATC | 6 cut(s) | 332, 504, 763, 1024, 1278, 1439 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 122, 156 |
| BciT130I | CCWGG | 2 cut(s) | 39, 1439 |
| BclI | TGATCA | 1 cut(s) | 907 |
| BcnI | CCSGG | 2 cut(s) | 802, 1367 |
| BcoDI | GTCTC | 1 cut(s) | 772 |
| BfoI | RGCGCY | 2 cut(s) | 58, 367 |
| BlpI | GCTNAGC | 1 cut(s) | 63 |
| BmcAI | AGTACT | 1 cut(s) | 1061 |
| Bme1390I | CCNGG | 4 cut(s) | 39, 802, 1367, 1439 |
| Bme18I | GGWCC | 2 cut(s) | 158, 698 |
| BmeT110I | CYCGRG | 1 cut(s) | 367 |
| BmgBI | CACGTC | 1 cut(s) | 457 |
| BmgT120I | GGNCC | 3 cut(s) | 158, 698, 1272 |
| BmiI | GGNNCC | 1 cut(s) | 700 |
| BmrFI | CCNGG | 4 cut(s) | 39, 802, 1367, 1439 |
| BmsI | GCATC | 1 cut(s) | 1432 |
| BpiI | GAAGAC | 3 cut(s) | 393, 1152, 1203 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 56, 88, 734, 766 |
| BpmI | CTGGAG | 3 cut(s) | 761, 1095, 1421 |
| Bpu10I | CCTNAGC | 2 cut(s) | 635, 760 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 63 |
| Bpu14I | TTCGAA | 1 cut(s) | 479 |
| BpuMI | CCSGG | 2 cut(s) | 802, 1367 |
| BsaBI | GATNNNNATC | 1 cut(s) | 896 |
| BsaJI | CCNNGG | 5 cut(s) | 47, 96, 164, 193, 417 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 441, 471, 1093, 1123 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 446, 610, 807, 1280, 1366 |
| Bse118I | RCCGGY | 2 cut(s) | 274, 439 |
| Bse3DI | GCAATG | 1 cut(s) | 574 |
| Bse8I | GATNNNNATC | 1 cut(s) | 896 |
| BseBI | CCWGG | 2 cut(s) | 39, 1439 |
| BseDI | CCNNGG | 5 cut(s) | 47, 96, 164, 193, 417 |
| BseGI | GGATG | 9 cut(s) | 739, 755, 1039, 1060, 1123, 1198, 1289, 1431, 1447 |
| BseJI | GATNNNNATC | 1 cut(s) | 896 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 446, 610, 807, 1280, 1366 |
| BseMI | GCAATG | 1 cut(s) | 574 |
| BseMII | CTCAG | 7 cut(s) | 54, 401, 416, 499, 649, 774, 1077 |
| BseRI | GAGGAG | 4 cut(s) | 230, 434, 457, 1401 |
| BseX3I | CGGCCG | 3 cut(s) | 99, 227, 437 |
| BseXI | GCAGC | 3 cut(s) | 79, 1087, 1230 |
| Bsh1236I | CGCG | 7 cut(s) | 49, 98, 166, 181, 195, 251, 816 |
| Bsh1285I | CGRYCG | 3 cut(s) | 102, 230, 440 |
| BshFI | GGCC | 8 cut(s) | 42, 101, 229, 342, 373, 439, 1273, 1424 |
| BsiEI | CGRYCG | 3 cut(s) | 102, 230, 440 |
| BsiHKAI | GWGCWC | 7 cut(s) | 69, 83, 416, 644, 747, 884, 1188 |
| BsiHKCI | CYCGRG | 1 cut(s) | 367 |
| BsiSI | CCGG | 7 cut(s) | 226, 275, 290, 436, 440, 801, 1367 |
| BslFI | GGGAC | 2 cut(s) | 661, 684 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 446, 610, 807, 1280, 1366 |
| BsmAI | GTCTC | 1 cut(s) | 772 |
| BsmFI | GGGAC | 2 cut(s) | 661, 684 |
| BsmI | GAATGC | 1 cut(s) | 461 |
| BsnI | GGCC | 8 cut(s) | 42, 101, 229, 342, 373, 439, 1273, 1424 |
| BsoBI | CYCGRG | 1 cut(s) | 367 |
| Bsp119I | TTCGAA | 1 cut(s) | 479 |
| Bsp1286I | GDGCHC | 7 cut(s) | 69, 83, 416, 644, 747, 884, 1188 |
| Bsp143I | GATC | 7 cut(s) | 127, 326, 736, 811, 897, 907, 1066 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 63 |
| BspANI | GGCC | 8 cut(s) | 42, 101, 229, 342, 373, 439, 1273, 1424 |
| BspCNI | CTCAG | 7 cut(s) | 55, 402, 417, 498, 648, 773, 1076 |
| BspFNI | CGCG | 7 cut(s) | 49, 98, 166, 181, 195, 251, 816 |
| BspLI | GGNNCC | 1 cut(s) | 700 |
| BspPI | GGATC | 3 cut(s) | 122, 334, 819 |
| BspT104I | TTCGAA | 1 cut(s) | 479 |
| BsrDI | GCAATG | 1 cut(s) | 574 |
| BsrFI | RCCGGY | 2 cut(s) | 274, 439 |
| BssAI | RCCGGY | 2 cut(s) | 274, 439 |
| BssECI | CCNNGG | 5 cut(s) | 47, 96, 164, 193, 417 |
| BssMI | GATC | 7 cut(s) | 127, 326, 736, 811, 897, 907, 1066 |
| BssSI | CACGAG | 2 cut(s) | 76, 212 |
| Bst2BI | CACGAG | 2 cut(s) | 76, 212 |
| Bst2UI | CCWGG | 2 cut(s) | 39, 1439 |
| Bst4CI | ACNGT | 2 cut(s) | 980, 1280 |
| Bst6I | CTCTTC | 2 cut(s) | 775, 1116 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1397 |
| BstBI | TTCGAA | 1 cut(s) | 479 |
| BstC8I | GCNNGC | 5 cut(s) | 20, 69, 272, 276, 347 |
| BstDEI | CTNAG | 7 cut(s) | 63, 410, 425, 485, 635, 760, 1063 |
| BstDSI | CCRYGG | 4 cut(s) | 47, 96, 164, 193 |
| BstF5I | GGATG | 9 cut(s) | 739, 755, 1039, 1060, 1123, 1198, 1289, 1431, 1447 |
| BstFNI | CGCG | 7 cut(s) | 49, 98, 166, 181, 195, 251, 816 |
| BstH2I | RGCGCY | 2 cut(s) | 58, 367 |
| BstHHI | GCGC | 5 cut(s) | 18, 24, 57, 183, 366 |
| BstKTI | GATC | 7 cut(s) | 130, 329, 739, 814, 900, 910, 1069 |
| BstMAI | GTCTC | 1 cut(s) | 772 |
| BstMBI | GATC | 7 cut(s) | 127, 326, 736, 811, 897, 907, 1066 |
| BstMCI | CGRYCG | 3 cut(s) | 102, 230, 440 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 68, 98, 101, 267, 339, 370, 1252, 1397, 1421 |
| BstNI | CCWGG | 2 cut(s) | 39, 1439 |
| BstNSI | RCATGY | 1 cut(s) | 22 |
| BstSCI | CCNGG | 4 cut(s) | 37, 800, 1365, 1437 |
| BstUI | CGCG | 7 cut(s) | 49, 98, 166, 181, 195, 251, 816 |
| BstV1I | GCAGC | 3 cut(s) | 79, 1087, 1230 |
| BstV2I | GAAGAC | 3 cut(s) | 393, 1152, 1203 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 510 |
| BstZI | CGGCCG | 3 cut(s) | 99, 227, 437 |
| BsuRI | GGCC | 8 cut(s) | 42, 101, 229, 342, 373, 439, 1273, 1424 |
| BtgI | CCRYGG | 4 cut(s) | 47, 96, 164, 193 |
| BtrI | CACGTC | 1 cut(s) | 457 |
| BtsCI | GGATG | 9 cut(s) | 739, 755, 1039, 1060, 1123, 1198, 1289, 1431, 1447 |
| BtsIMutI | CAGTG | 2 cut(s) | 594, 1285 |
| Cac8I | GCNNGC | 5 cut(s) | 20, 69, 272, 276, 347 |
| CciNI | GCGGCCGC | 1 cut(s) | 99 |
| CfoI | GCGC | 5 cut(s) | 18, 24, 57, 183, 366 |
| Cfr10I | RCCGGY | 2 cut(s) | 274, 439 |
| Cfr13I | GGNCC | 3 cut(s) | 158, 698, 1272 |
| Cfr42I | CCGCGG | 4 cut(s) | 50, 99, 167, 196 |
| CpoI | CGGWCCG | 1 cut(s) | 158 |
| CseI | GACGC | 3 cut(s) | 130, 706, 1261 |
| Csp6I | GTAC | 4 cut(s) | 173, 407, 500, 1060 |
| CspI | CGGWCCG | 1 cut(s) | 158 |
| CviAII | CATG | 7 cut(s) | 19, 25, 504, 610, 788, 951, 1446 |
| CviQI | GTAC | 4 cut(s) | 173, 407, 500, 1060 |
| DdeI | CTNAG | 7 cut(s) | 63, 410, 425, 485, 635, 760, 1063 |
| DpnI | GATC | 7 cut(s) | 129, 328, 738, 813, 899, 909, 1068 |
| DpnII | GATC | 7 cut(s) | 127, 326, 736, 811, 897, 907, 1066 |
| EaeI | YGGCCR | 4 cut(s) | 99, 227, 340, 437 |
| EagI | CGGCCG | 3 cut(s) | 99, 227, 437 |
| Eam1104I | CTCTTC | 2 cut(s) | 775, 1116 |
| EarI | CTCTTC | 2 cut(s) | 775, 1116 |
| EciI | GGCGGA | 1 cut(s) | 171 |
| Ecl136II | GAGCTC | 6 cut(s) | 81, 414, 642, 745, 882, 1186 |
| EclXI | CGGCCG | 3 cut(s) | 99, 227, 437 |
| Eco147I | AGGCCT | 2 cut(s) | 42, 1424 |
| Eco24I | GRGCYC | 6 cut(s) | 83, 416, 644, 747, 884, 1188 |
| Eco47I | GGWCC | 2 cut(s) | 158, 698 |
| Eco47III | AGCGCT | 1 cut(s) | 365 |
| Eco52I | CGGCCG | 3 cut(s) | 99, 227, 437 |
| Eco53kI | GAGCTC | 6 cut(s) | 81, 414, 642, 745, 882, 1186 |
| Eco57I | CTGAAG | 2 cut(s) | 1146, 1164 |
| Eco88I | CYCGRG | 1 cut(s) | 367 |
| EcoICRI | GAGCTC | 6 cut(s) | 81, 414, 642, 745, 882, 1186 |
| EcoRI | GAATTC | 1 cut(s) | 285 |
| EcoRII | CCWGG | 2 cut(s) | 37, 1437 |
| EcoT22I | ATGCAT | 1 cut(s) | 1447 |
| EcoT38I | GRGCYC | 6 cut(s) | 83, 416, 644, 747, 884, 1188 |
| FaeI | CATG | 7 cut(s) | 22, 28, 507, 613, 791, 954, 1449 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1144, 1176 |
| FaqI | GGGAC | 2 cut(s) | 661, 684 |
| FatI | CATG | 7 cut(s) | 18, 24, 503, 609, 787, 950, 1445 |
| FauI | CCCGC | 4 cut(s) | 54, 200, 254, 816 |
| FauNDI | CATATG | 1 cut(s) | 117 |
| FbaI | TGATCA | 1 cut(s) | 907 |
| FokI | GGATG | 9 cut(s) | 742, 746, 1046, 1067, 1130, 1205, 1296, 1418, 1454 |
| FriOI | GRGCYC | 6 cut(s) | 83, 416, 644, 747, 884, 1188 |
| FspAI | RTGCGCAY | 1 cut(s) | 23 |
| FspI | TGCGCA | 1 cut(s) | 23 |
| GlaI | GCGC | 5 cut(s) | 17, 23, 56, 182, 365 |
| GsuI | CTGGAG | 3 cut(s) | 761, 1095, 1421 |
| HaeII | RGCGCY | 2 cut(s) | 58, 367 |
| HaeIII | GGCC | 8 cut(s) | 42, 101, 229, 342, 373, 439, 1273, 1424 |
| HapII | CCGG | 7 cut(s) | 226, 275, 290, 436, 440, 801, 1367 |
| HgaI | GACGC | 3 cut(s) | 130, 706, 1261 |
| HhaI | GCGC | 5 cut(s) | 18, 24, 57, 183, 366 |
| Hin1II | CATG | 7 cut(s) | 22, 28, 507, 613, 791, 954, 1449 |
| Hin6I | GCGC | 5 cut(s) | 16, 22, 55, 181, 364 |
| HinP1I | GCGC | 5 cut(s) | 16, 22, 55, 181, 364 |
| HindIII | AAGCTT | 1 cut(s) | 268 |
| HinfI | GANTC | 6 cut(s) | 8, 110, 427, 657, 1102, 1226 |
| HpaII | CCGG | 7 cut(s) | 226, 275, 290, 436, 440, 801, 1367 |
| HphI | GGTGA | 3 cut(s) | 744, 1339, 1420 |
| Hpy166II | GTNNAC | 1 cut(s) | 1322 |
| Hpy188I | TCNGA | 9 cut(s) | 418, 449, 488, 656, 907, 988, 1066, 1165, 1344 |
| Hpy188III | TCNNGA | 5 cut(s) | 131, 357, 637, 740, 1112 |
| Hpy8I | GTNNAC | 1 cut(s) | 1322 |
| Hpy99I | CGWCG | 4 cut(s) | 137, 149, 338, 1255 |
| HpyAV | CCTTC | 9 cut(s) | 217, 376, 481, 601, 661, 989, 1031, 1170, 1435 |
| HpyCH4III | ACNGT | 2 cut(s) | 980, 1280 |
| HpyCH4IV | ACGT | 2 cut(s) | 147, 456 |
| HpyCH4V | TGCA | 6 cut(s) | 574, 579, 950, 1292, 1378, 1445 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 68, 98, 101, 267, 339, 370, 1252, 1397, 1421 |
| HpyF3I | CTNAG | 7 cut(s) | 63, 410, 425, 485, 635, 760, 1063 |
| HpySE526I | ACGT | 2 cut(s) | 147, 456 |
| Hsp92II | CATG | 7 cut(s) | 22, 28, 507, 613, 791, 954, 1449 |
| HspAI | GCGC | 5 cut(s) | 16, 22, 55, 181, 364 |
| KroI | GCCGGC | 1 cut(s) | 274 |
| KroNI | GCCGGC | 1 cut(s) | 276 |
| Ksp22I | TGATCA | 1 cut(s) | 907 |
| KspI | CCGCGG | 4 cut(s) | 50, 99, 167, 196 |
| Kzo9I | GATC | 7 cut(s) | 127, 326, 736, 811, 897, 907, 1066 |
| Lsp1109I | GCAGC | 3 cut(s) | 79, 1087, 1230 |
| LweI | GCATC | 1 cut(s) | 1432 |
| MaeII | ACGT | 2 cut(s) | 147, 456 |
| MalI | GATC | 7 cut(s) | 129, 328, 738, 813, 899, 909, 1068 |
| MboI | GATC | 7 cut(s) | 127, 326, 736, 811, 897, 907, 1066 |
| MfeI | CAATTG | 1 cut(s) | 945 |
| MhlI | GDGCHC | 7 cut(s) | 69, 83, 416, 644, 747, 884, 1188 |
| MlyI | GAGTC | 4 cut(s) | 17, 104, 436, 1096 |
| MmeI | TCCRAC | 2 cut(s) | 669, 1254 |
| Mph1103I | ATGCAT | 1 cut(s) | 1447 |
| MroNI | GCCGGC | 1 cut(s) | 274 |
| MseI | TTAA | 2 cut(s) | 32, 795 |
| MslI | CAYNNNNRTG | 3 cut(s) | 23, 508, 1238 |
| MspA1I | CMGCKG | 6 cut(s) | 49, 62, 98, 166, 195, 349 |
| MspI | CCGG | 7 cut(s) | 226, 275, 290, 436, 440, 801, 1367 |
| MspR9I | CCNGG | 4 cut(s) | 39, 802, 1367, 1439 |
| MunI | CAATTG | 1 cut(s) | 945 |
| Mva1269I | GAATGC | 1 cut(s) | 461 |
| MvaI | CCWGG | 2 cut(s) | 39, 1439 |
| MvnI | CGCG | 7 cut(s) | 49, 98, 166, 181, 195, 251, 816 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 68, 98, 101, 267, 339, 370, 1252, 1397, 1421 |
| NaeI | GCCGGC | 1 cut(s) | 276 |
| NciI | CCSGG | 2 cut(s) | 802, 1367 |
| NdeI | CATATG | 1 cut(s) | 117 |
| NdeII | GATC | 7 cut(s) | 127, 326, 736, 811, 897, 907, 1066 |
| NgoMIV | GCCGGC | 1 cut(s) | 274 |
| NlaIII | CATG | 7 cut(s) | 22, 28, 507, 613, 791, 954, 1449 |
| NlaIV | GGNNCC | 1 cut(s) | 700 |
| NotI | GCGGCCGC | 1 cut(s) | 99 |
| NsbI | TGCGCA | 1 cut(s) | 23 |
| NsiI | ATGCAT | 1 cut(s) | 1447 |
| NspI | RCATGY | 1 cut(s) | 22 |
| NspV | TTCGAA | 1 cut(s) | 479 |
| PaeI | GCATGC | 1 cut(s) | 22 |
| PaeR7I | CTCGAG | 1 cut(s) | 367 |
| PceI | AGGCCT | 2 cut(s) | 42, 1424 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 141, 453 |
| PctI | GAATGC | 1 cut(s) | 461 |
| PdiI | GCCGGC | 1 cut(s) | 276 |
| PfeI | GAWTC | 2 cut(s) | 657, 1226 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 610 |
| PfoI | TCCNGGA | 2 cut(s) | 800, 1437 |
| PleI | GAGTC | 4 cut(s) | 16, 104, 435, 1096 |
| PpsI | GAGTC | 4 cut(s) | 16, 104, 435, 1096 |
| PshBI | ATTAAT | 1 cut(s) | 32 |
| Psp124BI | GAGCTC | 6 cut(s) | 83, 416, 644, 747, 884, 1188 |
| Psp6I | CCWGG | 2 cut(s) | 37, 1437 |
| PspGI | CCWGG | 2 cut(s) | 37, 1437 |
| PspN4I | GGNNCC | 1 cut(s) | 700 |
| PspPI | GGNCC | 3 cut(s) | 158, 698, 1272 |
| PspXI | VCTCGAGB | 1 cut(s) | 367 |
| RsaI | GTAC | 4 cut(s) | 174, 408, 501, 1061 |
| RsaNI | GTAC | 4 cut(s) | 173, 407, 500, 1060 |
| RseI | CAYNNNNRTG | 3 cut(s) | 23, 508, 1238 |
| Rsr2I | CGGWCCG | 1 cut(s) | 158 |
| RsrII | CGGWCCG | 1 cut(s) | 158 |
| SacI | GAGCTC | 6 cut(s) | 83, 416, 644, 747, 884, 1188 |
| SacII | CCGCGG | 4 cut(s) | 50, 99, 167, 196 |
| SaqAI | TTAA | 2 cut(s) | 32, 795 |
| Sau3AI | GATC | 7 cut(s) | 127, 326, 736, 811, 897, 907, 1066 |
| Sau96I | GGNCC | 3 cut(s) | 158, 698, 1272 |
| ScaI | AGTACT | 1 cut(s) | 1061 |
| SchI | GAGTC | 4 cut(s) | 17, 104, 436, 1096 |
| ScrFI | CCNGG | 4 cut(s) | 39, 802, 1367, 1439 |
| SduI | GDGCHC | 7 cut(s) | 69, 83, 416, 644, 747, 884, 1188 |
| SfaNI | GCATC | 1 cut(s) | 1432 |
| Sfr274I | CTCGAG | 1 cut(s) | 367 |
| Sfr303I | CCGCGG | 4 cut(s) | 50, 99, 167, 196 |
| SfuI | TTCGAA | 1 cut(s) | 479 |
| SgrBI | CCGCGG | 4 cut(s) | 50, 99, 167, 196 |
| SinI | GGWCC | 2 cut(s) | 158, 698 |
| SlaI | CTCGAG | 1 cut(s) | 367 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 23, 508, 1238 |
| SmlI | CTYRAG | 1 cut(s) | 367 |
| SmoI | CTYRAG | 1 cut(s) | 367 |
| SphI | GCATGC | 1 cut(s) | 22 |
| SseBI | AGGCCT | 2 cut(s) | 42, 1424 |
| SstI | GAGCTC | 6 cut(s) | 83, 416, 644, 747, 884, 1188 |
| StuI | AGGCCT | 2 cut(s) | 42, 1424 |
| StyD4I | CCNGG | 4 cut(s) | 37, 800, 1365, 1437 |
| TaaI | ACNGT | 2 cut(s) | 980, 1280 |
| TaiI | ACGT | 2 cut(s) | 150, 459 |
| TatI | WGTACW | 1 cut(s) | 1059 |
| TauI | GCSGC | 9 cut(s) | 52, 55, 98, 101, 104, 166, 198, 232, 345 |
| TfiI | GAWTC | 2 cut(s) | 657, 1226 |
| Tru1I | TTAA | 2 cut(s) | 32, 795 |
| Tru9I | TTAA | 2 cut(s) | 32, 795 |
| TscAI | CASTG | 2 cut(s) | 601, 1285 |
| TseI | GCWGC | 3 cut(s) | 92, 1075, 1243 |
| TspDTI | ATGAA | 9 cut(s) | 542, 642, 885, 1050, 1098, 1134, 1209, 1447, 1465 |
| TspGWI | ACGGA | 1 cut(s) | 1150 |
| TspRI | CASTG | 2 cut(s) | 601, 1285 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 610 |
| VpaK11BI | GGWCC | 2 cut(s) | 158, 698 |
| VspI | ATTAAT | 1 cut(s) | 32 |
| XapI | RAATTY | 2 cut(s) | 235, 285 |
| XceI | RCATGY | 1 cut(s) | 22 |
| XhoI | CTCGAG | 1 cut(s) | 367 |
| ZrmI | AGTACT | 1 cut(s) | 1061 |
| Zsp2I | ATGCAT | 1 cut(s) | 1447 |