RchiOBHm_Chr5g0014901

DnaJ molecular chaperone homology domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
10300703 .. 10304056
3354 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29533

Sequence Viewer

Length: 1392 bp
ATGTTCGGGGTCGCCACAACTCTTCAAGCGGACGACTTCGCCGACGTGTTTGGGGGACCGCCACGGAGCGTCCTCCCTCGACAATCTTCCGGCTGCTCCACTTCGTTCTGCGAGGAGATTTTCCAGCCGGAGTTCGTCTCTACATCGGATAAGAGGGGCCGGAACTTGCCGGAGTTCAGGATTCCGGCGAGGAGCGAGGGGTTCTATAGTGATATCTTTGGATCGGACGATGAGTTCCAGCGGAGGTCGAGAGAGCGGTCGAGGCCGAACTCCAAGGCCAAGTCGAATTCTTCTTCGGTGCTGAGCTCGGAGGAGCTGAGTCCTCTGCAGCCGGTCATCGGCGATGACGTGGCGTTGTCGTCCTTCGCTTCGAAGCTCAGGCCCATAAATGTAAGATGGGACTCATCGACTATGAAGCCCGCCAAGGAACATTCAAAGAAACAAGGAATACCAGCAGGTGTTCATTGCAGTCATCCTTCATTCATCGAAAAACAAAATAACGAAAATGCATACGATGAACATACTAGAGCCTCCTACTTTGGATTCACACGAAAGGTTTTGTCCCCGGAAACCATTAGTATCGAACCCAGTTCATTTCGAAGTGTCAAGCTATCCACGGAGGATCTTGAACCACTCAACTCCCCTTCATCGGAAGTCTCTTCGATTTGTCAAGAACATGAGGCCAAAACGGGGATTCTTCATGATCATGTTTTGCCAGGAAAAGAAGTGGGGGTGCTAGAACAAGAAGAACTAGATGATGATGATGATGATGATGAAGTGATGAGCTCTTATGTGATTGAGATCAATTCTGACCATAGAGAGGGTACATGTGAAGAAGTTAACCTTGAAGAAGCAATTGCTTGGGCTAAAGAGAAGTTTCAAACGCATGGTGCTTCTGAAAAAGAATCAAGCATGACAGCTCATGATCACAATGAGCAGTCCATTGAAATGGATGAAGGAAGGCCTAATGTGGATGAATGCTCGGATCAACAGAGAGATGAACACGAAATGACTAGAACTCCCCAGGATGAAGACAGAACATGGTGTGGTGAAGATGAAAAGCAACATTCAGAAAAAGATATGGAACTGGAGTTCTTGGATGAAGACATAAGGTTATGGTCAGCTGGCAAGGAATTGAACATTCGCATGCTTCTTTCAACACTACACCAGATACTATGGCCCAATAGTGGTTGGTATACAATACCTCTGACAAGCCTAATAGAAAGTTCACAAGTCAAGAAAGCCTATCAAAAGGCAAGGCTATGTCTCCACCCTGACAAACTGCAACAAAGATCAGCAACACCAGCTCAAAAGTATGTTGCTGAGAAAGCTTTCTCCATCCTCCAGGATGCATGGGCAGTATTCATCTCCCAAGATGTTTTCATTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

463

Amino Acids

52.37

Weight (kDa)

4.8

Isoelectric Point (pI)

63.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 446
Acc36I ACCTGC 1 cut(s) 446
AccBSI CCGCTC 1 cut(s) 256
AccI GTMKAC 1 cut(s) 1196
AciI CCGC 5 cut(s) 29, 59, 241, 256, 420
AclWI GGATC 3 cut(s) 229, 630, 993
AcsI RAATTY 1 cut(s) 286
AfaI GTAC 1 cut(s) 826
AfiI CCNNNNNNNGG 5 cut(s) 338, 649, 690, 820, 1187
AflIII ACRYGT 2 cut(s) 45, 827
AgsI TTSAA 8 cut(s) 26, 435, 629, 848, 881, 947, 1138, 1158
AjiI CACGTC 2 cut(s) 46, 349
AjnI CCWGG 3 cut(s) 715, 1023, 1344
AloI GAACNNNNNNTCC 4 cut(s) 218, 250, 1076, 1108
AluBI AGCT 9 cut(s) 306, 316, 376, 610, 786, 920, 1124, 1307, 1331
AluI AGCT 9 cut(s) 306, 316, 376, 610, 786, 920, 1124, 1307, 1331
Alw21I GWGCWC 2 cut(s) 308, 788
Alw26I GTCTC 3 cut(s) 142, 661, 1271
AlwI GGATC 3 cut(s) 229, 630, 993
AoxI GGCC 7 cut(s) 157, 263, 276, 380, 681, 962, 1178
ApeKI GCWGC 2 cut(s) 93, 328
ApoI RAATTY 1 cut(s) 286
Asp700I GAANNNNTTC 1 cut(s) 1331
AspS9I GGNCC 4 cut(s) 56, 157, 381, 1179
AsuC2I CCSGG 1 cut(s) 566
AsuHPI GGTGA 1 cut(s) 1061
AsuII TTCGAA 2 cut(s) 371, 598
AvaII GGWCC 1 cut(s) 56
BanII GRGCYC 2 cut(s) 308, 788
BbsI GAAGAC 2 cut(s) 1038, 1110
Bbv12I GWGCWC 2 cut(s) 308, 788
BbvI GCAGC 2 cut(s) 80, 340
BccI CCATC 2 cut(s) 390, 1346
BciT130I CCWGG 3 cut(s) 717, 1025, 1346
BclI TGATCA 2 cut(s) 703, 925
BcnI CCSGG 1 cut(s) 566
BcoDI GTCTC 3 cut(s) 142, 661, 1271
BfaI CTAG 5 cut(s) 525, 737, 752, 1014, 1390
BfmI CTRYAG 2 cut(s) 205, 326
BfuAI ACCTGC 1 cut(s) 446
BisI GCNGC 2 cut(s) 94, 329
BlpI GCTNAGC 1 cut(s) 302
BlsI GCNGC 2 cut(s) 95, 330
Bme1390I CCNGG 4 cut(s) 566, 717, 1025, 1346
Bme18I GGWCC 1 cut(s) 56
BmgBI CACGTC 2 cut(s) 46, 349
BmgT120I GGNCC 4 cut(s) 56, 157, 381, 1179
BmiI GGNNCC 2 cut(s) 57, 158
BmrFI CCNGG 4 cut(s) 566, 717, 1025, 1346
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 1 cut(s) 1339
BmuI ACTGGG 1 cut(s) 582
BpiI GAAGAC 2 cut(s) 1038, 1110
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpmI CTGGAG 2 cut(s) 1109, 1328
Bpu10I CCTNAGC 1 cut(s) 377
Bpu1102I GCTNAGC 1 cut(s) 302
Bpu14I TTCGAA 2 cut(s) 371, 598
BpuMI CCSGG 1 cut(s) 566
BsaBI GATNNNNATC 1 cut(s) 800
BsaJI CCNNGG 6 cut(s) 62, 273, 423, 564, 615, 1023
BsaXI ACNNNNNCTCC 2 cut(s) 1003, 1033
Bsc4I CCNNNNNNNGG 5 cut(s) 338, 649, 690, 820, 1187
Bse118I RCCGGY 1 cut(s) 331
Bse1I ACTGG 2 cut(s) 588, 1092
Bse3DI GCAATG 1 cut(s) 463
Bse8I GATNNNNATC 1 cut(s) 800
BseBI CCWGG 3 cut(s) 717, 1025, 1346
BseDI CCNNGG 6 cut(s) 62, 273, 423, 564, 615, 1023
BseGI GGATG 7 cut(s) 472, 958, 979, 1033, 1105, 1338, 1354
BseJI GATNNNNATC 1 cut(s) 800
BseLI CCNNNNNNNGG 5 cut(s) 338, 649, 690, 820, 1187
BseMI GCAATG 1 cut(s) 463
BseMII CTCAG 4 cut(s) 293, 308, 391, 1314
BseNI ACTGG 2 cut(s) 588, 1092
BseRI GAGGAG 3 cut(s) 128, 205, 326
BseXI GCAGC 2 cut(s) 80, 340
Bsh1285I CGRYCG 1 cut(s) 260
BshFI GGCC 7 cut(s) 159, 265, 278, 382, 683, 964, 1180
BsiEI CGRYCG 1 cut(s) 260
BsiHKAI GWGCWC 2 cut(s) 308, 788
BsiSI CCGG 7 cut(s) 90, 128, 160, 170, 185, 332, 566
BslFI GGGAC 3 cut(s) 69, 413, 547
BslI CCNNNNNNNGG 5 cut(s) 338, 649, 690, 820, 1187
BsmAI GTCTC 3 cut(s) 142, 661, 1271
BsmBI CGTCTC 1 cut(s) 142
BsmFI GGGAC 3 cut(s) 69, 413, 547
BsmI GAATGC 1 cut(s) 983
BsnI GGCC 7 cut(s) 159, 265, 278, 382, 683, 964, 1180
Bsp119I TTCGAA 2 cut(s) 371, 598
Bsp1286I GDGCHC 2 cut(s) 308, 788
Bsp143I GATC 7 cut(s) 221, 622, 703, 801, 925, 985, 1292
Bsp1720I GCTNAGC 1 cut(s) 302
BspACI CCGC 5 cut(s) 29, 59, 241, 256, 420
BspANI GGCC 7 cut(s) 159, 265, 278, 382, 683, 964, 1180
BspCNI CTCAG 4 cut(s) 294, 309, 390, 1315
BspHI TCATGA 2 cut(s) 700, 922
BspLI GGNNCC 2 cut(s) 57, 158
BspMAI CTGCAG 1 cut(s) 330
BspMI ACCTGC 1 cut(s) 446
BspPI GGATC 3 cut(s) 229, 630, 993
BspT104I TTCGAA 2 cut(s) 371, 598
BsrBI CCGCTC 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 463
BsrFI RCCGGY 1 cut(s) 331
BsrI ACTGG 2 cut(s) 588, 1092
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 6 cut(s) 62, 273, 423, 564, 615, 1023
BssMI GATC 7 cut(s) 221, 622, 703, 801, 925, 985, 1292
BssNAI GTATAC 1 cut(s) 1197
BssT1I CCWWGG 2 cut(s) 273, 423
Bst1107I GTATAC 1 cut(s) 1197
Bst2UI CCWGG 3 cut(s) 717, 1025, 1346
Bst6I CTCTTC 2 cut(s) 27, 664
BstBI TTCGAA 2 cut(s) 371, 598
BstC8I GCNNGC 3 cut(s) 420, 1126, 1148
BstDEI CTNAG 4 cut(s) 302, 317, 377, 1323
BstDSI CCRYGG 2 cut(s) 62, 615
BstF5I GGATG 7 cut(s) 472, 958, 979, 1033, 1105, 1338, 1354
BstKTI GATC 7 cut(s) 224, 625, 706, 804, 928, 988, 1295
BstMAI GTCTC 3 cut(s) 142, 661, 1271
BstMBI GATC 7 cut(s) 221, 622, 703, 801, 925, 985, 1292
BstMCI CGRYCG 1 cut(s) 260
BstMWI GCNNNNNNNGC 3 cut(s) 262, 1304, 1328
BstNI CCWGG 3 cut(s) 717, 1025, 1346
BstNSI RCATGY 2 cut(s) 831, 1150
BstSCI CCNGG 4 cut(s) 564, 715, 1023, 1344
BstSFI CTRYAG 2 cut(s) 205, 326
BstV1I GCAGC 2 cut(s) 80, 340
BstV2I GAAGAC 2 cut(s) 1038, 1110
BstX2I RGATCY 1 cut(s) 622
BstXI CCANNNNNNTGG 1 cut(s) 949
BstYI RGATCY 1 cut(s) 622
BstZ17I GTATAC 1 cut(s) 1197
BsuRI GGCC 7 cut(s) 159, 265, 278, 382, 683, 964, 1180
BtgI CCRYGG 2 cut(s) 62, 615
BtgZI GCGATG 1 cut(s) 357
BtrI CACGTC 2 cut(s) 46, 349
BtsCI GGATG 7 cut(s) 472, 958, 979, 1033, 1105, 1338, 1354
BveI ACCTGC 1 cut(s) 446
Cac8I GCNNGC 3 cut(s) 420, 1126, 1148
CciI TCATGA 2 cut(s) 700, 922
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 4 cut(s) 56, 157, 381, 1179
CseI GACGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 825
CviQI GTAC 1 cut(s) 825
DdeI CTNAG 4 cut(s) 302, 317, 377, 1323
DpnI GATC 7 cut(s) 223, 624, 705, 803, 927, 987, 1294
DpnII GATC 7 cut(s) 221, 622, 703, 801, 925, 985, 1292
Eam1104I CTCTTC 2 cut(s) 27, 664
EarI CTCTTC 2 cut(s) 27, 664
Ecl136II GAGCTC 2 cut(s) 306, 786
Eco130I CCWWGG 2 cut(s) 273, 423
Eco147I AGGCCT 1 cut(s) 964
Eco24I GRGCYC 2 cut(s) 308, 788
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 56
Eco53kI GAGCTC 2 cut(s) 306, 786
EcoICRI GAGCTC 2 cut(s) 306, 786
EcoRI GAATTC 1 cut(s) 286
EcoRII CCWGG 3 cut(s) 715, 1023, 1344
EcoRV GATATC 1 cut(s) 214
EcoT14I CCWWGG 2 cut(s) 273, 423
EcoT22I ATGCAT 2 cut(s) 511, 1354
EcoT38I GRGCYC 2 cut(s) 308, 788
ErhI CCWWGG 2 cut(s) 273, 423
Esp3I CGTCTC 1 cut(s) 142
FalI AAGNNNNNCTT 2 cut(s) 828, 860
FaqI GGGAC 3 cut(s) 69, 413, 547
FauI CCCGC 1 cut(s) 427
FbaI TGATCA 2 cut(s) 703, 925
FblI GTMKAC 1 cut(s) 1196
Fnu4HI GCNGC 2 cut(s) 94, 329
FokI GGATG 7 cut(s) 459, 965, 986, 1040, 1112, 1325, 1361
FriOI GRGCYC 2 cut(s) 308, 788
Fsp4HI GCNGC 2 cut(s) 94, 329
FspBI CTAG 5 cut(s) 525, 737, 752, 1014, 1390
GluI GCNGC 2 cut(s) 94, 329
GsuI CTGGAG 2 cut(s) 1109, 1328
HaeIII GGCC 7 cut(s) 159, 265, 278, 382, 683, 964, 1180
HapII CCGG 7 cut(s) 90, 128, 160, 170, 185, 332, 566
HgaI GACGC 1 cut(s) 58
HincII GTYRAC 1 cut(s) 841
HindII GTYRAC 1 cut(s) 841
HindIII AAGCTT 1 cut(s) 1329
HinfI GANTC 6 cut(s) 181, 319, 401, 543, 694, 905
HpaI GTTAAC 1 cut(s) 841
HpaII CCGG 7 cut(s) 90, 128, 160, 170, 185, 332, 566
HphI GGTGA 1 cut(s) 1061
Hpy166II GTNNAC 3 cut(s) 841, 1197, 1229
Hpy188I TCNGA 9 cut(s) 148, 226, 310, 652, 811, 898, 985, 1072, 1209
Hpy188III TCNNGA 7 cut(s) 178, 249, 626, 671, 701, 923, 1237
Hpy8I GTNNAC 3 cut(s) 841, 1197, 1229
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 5 cut(s) 373, 486, 654, 950, 954
HpyCH4IV ACGT 2 cut(s) 45, 348
HpyCH4V TGCA 5 cut(s) 328, 468, 509, 1285, 1352
HpyF10VI GCNNNNNNNGC 3 cut(s) 262, 1304, 1328
HpyF3I CTNAG 4 cut(s) 302, 317, 377, 1323
HpySE526I ACGT 2 cut(s) 45, 348
Ksp22I TGATCA 2 cut(s) 703, 925
KspAI GTTAAC 1 cut(s) 841
Kzo9I GATC 7 cut(s) 221, 622, 703, 801, 925, 985, 1292
LmnI GCTCC 4 cut(s) 66, 101, 192, 313
Lsp1109I GCAGC 2 cut(s) 80, 340
LweI GCATC 1 cut(s) 1339
MaeI CTAG 5 cut(s) 525, 737, 752, 1014, 1390
MaeII ACGT 2 cut(s) 45, 348
MalI GATC 7 cut(s) 223, 624, 705, 803, 927, 987, 1294
MbiI CCGCTC 1 cut(s) 256
MboI GATC 7 cut(s) 221, 622, 703, 801, 925, 985, 1292
MfeI CAATTG 1 cut(s) 855
MflI RGATCY 1 cut(s) 622
MhlI GDGCHC 2 cut(s) 308, 788
MluCI AATT 4 cut(s) 286, 805, 855, 1133
MlyI GAGTC 2 cut(s) 328, 395
Mph1103I ATGCAT 2 cut(s) 511, 1354
MroXI GAANNNNTTC 1 cut(s) 1331
MseI TTAA 1 cut(s) 840
MslI CAYNNNNRTG 3 cut(s) 705, 947, 1145
MspA1I CMGCKG 2 cut(s) 241, 1124
MspI CCGG 7 cut(s) 90, 128, 160, 170, 185, 332, 566
MspR9I CCNGG 4 cut(s) 566, 717, 1025, 1346
MunI CAATTG 1 cut(s) 855
Mva1269I GAATGC 1 cut(s) 983
MvaI CCWGG 3 cut(s) 717, 1025, 1346
MwoI GCNNNNNNNGC 3 cut(s) 262, 1304, 1328
NciI CCSGG 1 cut(s) 566
NdeII GATC 7 cut(s) 221, 622, 703, 801, 925, 985, 1292
NlaIV GGNNCC 2 cut(s) 57, 158
NsiI ATGCAT 2 cut(s) 511, 1354
NspI RCATGY 2 cut(s) 831, 1150
NspV TTCGAA 2 cut(s) 371, 598
PaeI GCATGC 1 cut(s) 1150
PagI TCATGA 2 cut(s) 700, 922
PaqCI CACCTGC 1 cut(s) 446
PceI AGGCCT 1 cut(s) 964
PciI ACATGT 1 cut(s) 827
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 345
PctI GAATGC 1 cut(s) 983
PdmI GAANNNNTTC 1 cut(s) 1331
PfeI GAWTC 4 cut(s) 181, 543, 694, 905
PfoI TCCNGGA 1 cut(s) 1344
PkrI GCNGC 2 cut(s) 95, 330
PleI GAGTC 2 cut(s) 327, 395
PpsI GAGTC 2 cut(s) 327, 395
PscI ACATGT 1 cut(s) 827
Psp124BI GAGCTC 2 cut(s) 308, 788
Psp6I CCWGG 3 cut(s) 715, 1023, 1344
PspGI CCWGG 3 cut(s) 715, 1023, 1344
PspN4I GGNNCC 2 cut(s) 57, 158
PspPI GGNCC 4 cut(s) 56, 157, 381, 1179
PstI CTGCAG 1 cut(s) 330
PsuI RGATCY 1 cut(s) 622
PvuII CAGCTG 1 cut(s) 1124
RsaI GTAC 1 cut(s) 826
RsaNI GTAC 1 cut(s) 825
RseI CAYNNNNRTG 3 cut(s) 705, 947, 1145
SacI GAGCTC 2 cut(s) 308, 788
SaqAI TTAA 1 cut(s) 840
SatI GCNGC 2 cut(s) 94, 329
Sau3AI GATC 7 cut(s) 221, 622, 703, 801, 925, 985, 1292
Sau96I GGNCC 4 cut(s) 56, 157, 381, 1179
SchI GAGTC 2 cut(s) 328, 395
ScrFI CCNGG 4 cut(s) 566, 717, 1025, 1346
SduI GDGCHC 2 cut(s) 308, 788
SfaNI GCATC 1 cut(s) 1339
SfcI CTRYAG 2 cut(s) 205, 326
SfuI TTCGAA 2 cut(s) 371, 598
SinI GGWCC 1 cut(s) 56
SmiMI CAYNNNNRTG 3 cut(s) 705, 947, 1145
SphI GCATGC 1 cut(s) 1150
Sse9I AATT 4 cut(s) 286, 805, 855, 1133
SseBI AGGCCT 1 cut(s) 964
SsiI CCGC 5 cut(s) 29, 59, 241, 256, 420
SspMI CTAG 5 cut(s) 525, 737, 752, 1014, 1390
SstI GAGCTC 2 cut(s) 308, 788
StuI AGGCCT 1 cut(s) 964
StyD4I CCNGG 4 cut(s) 564, 715, 1023, 1344
StyI CCWWGG 2 cut(s) 273, 423
TaiI ACGT 2 cut(s) 48, 351
TasI AATT 4 cut(s) 286, 805, 855, 1133
TfiI GAWTC 4 cut(s) 181, 543, 694, 905
Tru1I TTAA 1 cut(s) 840
Tru9I TTAA 1 cut(s) 840
TseI GCWGC 2 cut(s) 93, 328
TspGWI ACGGA 2 cut(s) 79, 632
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 1 cut(s) 286
XceI RCATGY 2 cut(s) 831, 1150
XmiI GTMKAC 1 cut(s) 1196
XmnI GAANNNNTTC 1 cut(s) 1331
XspI CTAG 5 cut(s) 525, 737, 752, 1014, 1390
Zsp2I ATGCAT 2 cut(s) 511, 1354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.