Rorug05G0021200

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006648
Physical Location & Seq
Reverse (-)
1371010 .. 1371613
604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0021200.1

Sequence Viewer

Length: 390 bp
ATGTACAATAGTGCACCCTACCAAAGCAATAGAAGCTACATTGAAGGAATTGATCACAAGAATACGAGCACCCTGGCAAAATGGAACAATGAGAATTACAGACAGAATTCTTACTTCATATTCACTGATCTAGTCAAAAGAGGCAGTGATGATGCTCAAGACAGCAATGATCAAGTGAAAGTACTGTCATTAGTCAATGCTGGTTGCCAAAGCAATCATAGTAAACCGGAAGATTTAGGTGGTGAAACTGAAACTGAAGCAGAGATTGATGCTGCAATGTCTCCATCACTCAAATCGTCATCAAAGGCTTATTATTCGCAGCAGTTCAGGCCAAGCGACTCTGAGAATTCAGTTGTGAATGATGTCTCTCTTGAACTTAGTCTTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.37

Weight (kDa)

4.59

Isoelectric Point (pI)

58.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 106, 346
AcuI CTGAAG 1 cut(s) 276
AfaI GTAC 2 cut(s) 5, 183
AgsI TTSAA 2 cut(s) 44, 374
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
Alw21I GWGCWC 2 cut(s) 16, 71
Alw26I GTCTC 2 cut(s) 285, 370
Alw44I GTGCAC 1 cut(s) 12
AoxI GGCC 1 cut(s) 329
ApaLI GTGCAC 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 272, 319
ApoI RAATTY 2 cut(s) 106, 346
AsuHPI GGTGA 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 16
Bbv12I GWGCWC 2 cut(s) 16, 71
BbvI GCAGC 2 cut(s) 259, 331
BccI CCATC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 74
BclI TGATCA 2 cut(s) 52, 169
BcoDI GTCTC 2 cut(s) 285, 370
BfaI CTAG 1 cut(s) 131
BisI GCNGC 2 cut(s) 273, 320
BlsI GCNGC 2 cut(s) 274, 321
BmcAI AGTACT 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 2 cut(s) 142, 259
BpuEI CTTGAG 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 226
Bse3DI GCAATG 2 cut(s) 172, 282
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 72
BseMI GCAATG 2 cut(s) 172, 282
BseMII CTCAG 1 cut(s) 333
BseSI GKGCMC 1 cut(s) 16
BseXI GCAGC 2 cut(s) 259, 331
BshFI GGCC 1 cut(s) 331
BsiHKAI GWGCWC 2 cut(s) 16, 71
BsiSI CCGG 1 cut(s) 227
BsmAI GTCTC 2 cut(s) 285, 370
BsnI GGCC 1 cut(s) 331
Bsp1286I GDGCHC 2 cut(s) 16, 71
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 52, 127, 169
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 1 cut(s) 334
BsrDI GCAATG 2 cut(s) 172, 282
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 3 cut(s) 52, 127, 169
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 186
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 2 cut(s) 342, 377
BstKTI GATC 3 cut(s) 55, 130, 172
BstMAI GTCTC 2 cut(s) 285, 370
BstMBI GATC 3 cut(s) 52, 127, 169
BstMWI GCNNNNNNNGC 2 cut(s) 33, 328
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstSLI GKGCMC 1 cut(s) 16
BstV1I GCAGC 2 cut(s) 259, 331
BsuRI GGCC 1 cut(s) 331
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 2 cut(s) 123, 151
Csp6I GTAC 2 cut(s) 4, 182
CviJI RGCY 3 cut(s) 36, 308, 331
CviKI_1 RGCY 3 cut(s) 36, 308, 331
CviQI GTAC 2 cut(s) 4, 182
DdeI CTNAG 2 cut(s) 342, 377
DpnI GATC 3 cut(s) 54, 129, 171
DpnII GATC 3 cut(s) 52, 127, 169
Eco57I CTGAAG 1 cut(s) 276
EcoRI GAATTC 2 cut(s) 106, 346
EcoRII CCWGG 1 cut(s) 72
FaiI YATR 2 cut(s) 119, 219
FbaI TGATCA 2 cut(s) 52, 169
Fnu4HI GCNGC 2 cut(s) 273, 320
Fsp4HI GCNGC 2 cut(s) 273, 320
FspBI CTAG 1 cut(s) 131
GluI GCNGC 2 cut(s) 273, 320
HaeIII GGCC 1 cut(s) 331
HapII CCGG 1 cut(s) 227
HinfI GANTC 1 cut(s) 338
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 2 cut(s) 14, 224
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 2 cut(s) 158, 371
Hpy8I GTNNAC 2 cut(s) 14, 224
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4V TGCA 2 cut(s) 14, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 328
HpyF3I CTNAG 2 cut(s) 342, 377
Ksp22I TGATCA 2 cut(s) 52, 169
Kzo9I GATC 3 cut(s) 52, 127, 169
LpnPI CCDG 5 cut(s) 59, 86, 186, 240, 313
Lsp1109I GCAGC 2 cut(s) 259, 331
LweI GCATC 2 cut(s) 142, 259
MaeI CTAG 1 cut(s) 131
MalI GATC 3 cut(s) 54, 129, 171
MboI GATC 3 cut(s) 52, 127, 169
MboII GAAGA 1 cut(s) 242
MhlI GDGCHC 2 cut(s) 16, 71
MluCI AATT 4 cut(s) 48, 94, 106, 346
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 1 cut(s) 134
MseI TTAA 1 cut(s) 388
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 33, 328
NdeII GATC 3 cut(s) 52, 127, 169
PkrI GCNGC 2 cut(s) 274, 321
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
RsaI GTAC 2 cut(s) 5, 183
RsaNI GTAC 2 cut(s) 4, 182
SaqAI TTAA 1 cut(s) 388
SatI GCNGC 2 cut(s) 273, 320
Sau3AI GATC 3 cut(s) 52, 127, 169
ScaI AGTACT 1 cut(s) 183
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 2 cut(s) 16, 71
SetI ASST 2 cut(s) 38, 241
SfaNI GCATC 2 cut(s) 142, 259
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 4 cut(s) 48, 94, 106, 346
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 186
TasI AATT 4 cut(s) 48, 94, 106, 346
TatI WGTACW 2 cut(s) 3, 181
Tru1I TTAA 1 cut(s) 388
Tru9I TTAA 1 cut(s) 388
TscAI CASTG 2 cut(s) 130, 151
TseI GCWGC 2 cut(s) 272, 319
TspDTI ATGAA 1 cut(s) 106
TspRI CASTG 2 cut(s) 130, 151
VneI GTGCAC 1 cut(s) 12
XapI RAATTY 2 cut(s) 106, 346
XspI CTAG 1 cut(s) 131
ZrmI AGTACT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.