DnaJ molecular chaperone homology domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G30280 AT1G30280 AT1G30280 |
| fragaria_vesca | FvH4_3g05060 FvH4_3g05060 FvH4_3g05060 FvH4_3g05060 |
| malus_domestica | MD05G1279900.v1.1 MD10G1258400.v1.1 |
| prunus_persica | Prupe.4G085400_v2.0.a1 Prupe.4G085400_v2.0.a1 |
| pyrus_communis | pycom05g26010 pycom10g21470 pycom10g21480 |
| rosa_chinensis | RchiOBHm_Chr5g0014901 |
| rosa_laevigata | RLG00000032149 |
| rosa_multiflora | Rmu_sc0013610.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00061670 |
| rosa_rugosa | Rorug05G0021100.1 Rorug05G0021200 |
| rosa_samantha | Rh5AG117000 Rh5BG113400 Rh5BG114000 Rh5CG125500 Rh5DG113400 |
| rosa_wichuraiana | Rw5G010070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 914 |
| Acc16I | TGCGCA | 1 cut(s) | 23 |
| Acc36I | ACCTGC | 1 cut(s) | 914 |
| AccB1I | GGYRCC | 1 cut(s) | 51 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 604 |
| AccBSI | CCGCTC | 2 cut(s) | 57, 252 |
| AccII | CGCG | 5 cut(s) | 49, 79, 157, 172, 174 |
| AccIII | TCCGGA | 1 cut(s) | 121 |
| AclWI | GGATC | 4 cut(s) | 113, 325, 810, 1044 |
| AcoI | YGGCCR | 4 cut(s) | 184, 253, 334, 428 |
| AcsI | RAATTY | 3 cut(s) | 176, 538, 788 |
| AcuI | CTGAAG | 1 cut(s) | 1182 |
| AcyI | GRCGYC | 1 cut(s) | 52 |
| AfaI | GTAC | 2 cut(s) | 492, 913 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 48, 223, 230, 437, 604 |
| AflIII | ACRYGT | 2 cut(s) | 77, 914 |
| AgsI | TTSAA | 5 cut(s) | 471, 935, 968, 1196, 1269 |
| AjiI | CACGTC | 2 cut(s) | 70, 448 |
| AjnI | CCWGG | 1 cut(s) | 1455 |
| Alw21I | GWGCWC | 5 cut(s) | 69, 407, 417, 738, 875 |
| Alw26I | GTCTC | 4 cut(s) | 76, 689, 763, 1382 |
| AlwI | GGATC | 4 cut(s) | 113, 325, 810, 1044 |
| Aor13HI | TCCGGA | 1 cut(s) | 121 |
| AoxI | GGCC | 9 cut(s) | 184, 218, 253, 334, 362, 428, 951, 1049, 1440 |
| ApeKI | GCWGC | 3 cut(s) | 95, 520, 1261 |
| ApoI | RAATTY | 3 cut(s) | 176, 538, 788 |
| AseI | ATTAAT | 1 cut(s) | 32 |
| AspLEI | GCGC | 4 cut(s) | 18, 24, 54, 174 |
| AspS9I | GGNCC | 3 cut(s) | 149, 219, 951 |
| AsuC2I | CCSGG | 2 cut(s) | 224, 282 |
| AsuII | TTCGAA | 1 cut(s) | 542 |
| AvaII | GGWCC | 1 cut(s) | 149 |
| BanI | GGYRCC | 1 cut(s) | 51 |
| BanII | GRGCYC | 5 cut(s) | 407, 417, 738, 875, 1471 |
| BbsI | GAAGAC | 2 cut(s) | 861, 1221 |
| Bbv12I | GWGCWC | 5 cut(s) | 69, 407, 417, 738, 875 |
| BbvCI | CCTCAGC | 1 cut(s) | 751 |
| BbvI | GCAGC | 3 cut(s) | 82, 507, 1248 |
| BccI | CCATC | 4 cut(s) | 495, 754, 1296, 1457 |
| BceAI | ACGGC | 2 cut(s) | 255, 346 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 502, 536, 557, 591 |
| BciT130I | CCWGG | 1 cut(s) | 1457 |
| BcnI | CCSGG | 2 cut(s) | 224, 282 |
| BcoDI | GTCTC | 4 cut(s) | 76, 689, 763, 1382 |
| BfaI | CTAG | 1 cut(s) | 731 |
| BfmI | CTRYAG | 1 cut(s) | 301 |
| BfoI | RGCGCY | 1 cut(s) | 55 |
| BfuAI | ACCTGC | 1 cut(s) | 914 |
| BlpI | GCTNAGC | 2 cut(s) | 401, 416 |
| Bme1390I | CCNGG | 3 cut(s) | 224, 282, 1457 |
| Bme18I | GGWCC | 1 cut(s) | 149 |
| BmgBI | CACGTC | 2 cut(s) | 70, 448 |
| BmgT120I | GGNCC | 3 cut(s) | 149, 219, 951 |
| BmiI | GGNNCC | 3 cut(s) | 53, 150, 221 |
| BmrFI | CCNGG | 3 cut(s) | 224, 282, 1457 |
| BmsI | GCATC | 2 cut(s) | 569, 1450 |
| BpiI | GAAGAC | 2 cut(s) | 861, 1221 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 56, 88 |
| BpmI | CTGGAG | 2 cut(s) | 1101, 1439 |
| Bpu10I | CCTNAGC | 1 cut(s) | 751 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 401, 416 |
| Bpu14I | TTCGAA | 1 cut(s) | 542 |
| BpuMI | CCSGG | 2 cut(s) | 224, 282 |
| BsaBI | GATNNNNATC | 1 cut(s) | 887 |
| BsaHI | GRCGYC | 1 cut(s) | 52 |
| BsaJI | CCNNGG | 3 cut(s) | 47, 222, 281 |
| BsaWI | WCCGGW | 1 cut(s) | 121 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 432, 462, 1099, 1129 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 48, 223, 230, 437, 604 |
| Bse118I | RCCGGY | 1 cut(s) | 265 |
| Bse3DI | GCAATG | 1 cut(s) | 568 |
| Bse8I | GATNNNNATC | 1 cut(s) | 887 |
| BseAI | TCCGGA | 1 cut(s) | 121 |
| BseBI | CCWGG | 1 cut(s) | 1457 |
| BseDI | CCNNGG | 3 cut(s) | 47, 222, 281 |
| BseGI | GGATG | 9 cut(s) | 10, 106, 730, 746, 1069, 1216, 1307, 1449, 1465 |
| BseJI | GATNNNNATC | 1 cut(s) | 887 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 48, 223, 230, 437, 604 |
| BseMI | GCAATG | 1 cut(s) | 568 |
| BseMII | CTCAG | 7 cut(s) | 392, 430, 490, 765, 888, 975, 1086 |
| BseRI | GAGGAG | 4 cut(s) | 221, 301, 425, 1419 |
| BseX3I | CGGCCG | 3 cut(s) | 184, 253, 428 |
| BseXI | GCAGC | 3 cut(s) | 82, 507, 1248 |
| Bsh1236I | CGCG | 5 cut(s) | 49, 79, 157, 172, 174 |
| Bsh1285I | CGRYCG | 4 cut(s) | 187, 256, 359, 431 |
| BshFI | GGCC | 9 cut(s) | 186, 220, 255, 336, 364, 430, 953, 1051, 1442 |
| BshNI | GGYRCC | 1 cut(s) | 51 |
| BsiEI | CGRYCG | 4 cut(s) | 187, 256, 359, 431 |
| BsiHKAI | GWGCWC | 5 cut(s) | 69, 407, 417, 738, 875 |
| BsiSI | CCGG | 8 cut(s) | 122, 183, 217, 224, 256, 266, 281, 427 |
| BslFI | GGGAC | 2 cut(s) | 162, 652 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 48, 223, 230, 437, 604 |
| BsmAI | GTCTC | 4 cut(s) | 76, 689, 763, 1382 |
| BsmBI | CGTCTC | 1 cut(s) | 76 |
| BsmFI | GGGAC | 2 cut(s) | 162, 652 |
| BsnI | GGCC | 9 cut(s) | 186, 220, 255, 336, 364, 430, 953, 1051, 1442 |
| Bsp119I | TTCGAA | 1 cut(s) | 542 |
| Bsp1286I | GDGCHC | 6 cut(s) | 69, 407, 417, 738, 875, 1471 |
| Bsp13I | TCCGGA | 1 cut(s) | 121 |
| Bsp143I | GATC | 9 cut(s) | 118, 317, 356, 432, 727, 802, 888, 1036, 1075 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 401, 416 |
| BspANI | GGCC | 9 cut(s) | 186, 220, 255, 336, 364, 430, 953, 1051, 1442 |
| BspCNI | CTCAG | 7 cut(s) | 393, 429, 489, 764, 889, 976, 1085 |
| BspEI | TCCGGA | 1 cut(s) | 121 |
| BspFNI | CGCG | 5 cut(s) | 49, 79, 157, 172, 174 |
| BspHI | TCATGA | 1 cut(s) | 1099 |
| BspLI | GGNNCC | 3 cut(s) | 53, 150, 221 |
| BspMI | ACCTGC | 1 cut(s) | 914 |
| BspPI | GGATC | 4 cut(s) | 113, 325, 810, 1044 |
| BspT104I | TTCGAA | 1 cut(s) | 542 |
| BspT107I | GGYRCC | 1 cut(s) | 51 |
| BsrBI | CCGCTC | 2 cut(s) | 57, 252 |
| BsrDI | GCAATG | 1 cut(s) | 568 |
| BsrFI | RCCGGY | 1 cut(s) | 265 |
| BssAI | RCCGGY | 1 cut(s) | 265 |
| BssECI | CCNNGG | 3 cut(s) | 47, 222, 281 |
| BssMI | GATC | 9 cut(s) | 118, 317, 356, 432, 727, 802, 888, 1036, 1075 |
| BssNI | GRCGYC | 1 cut(s) | 52 |
| Bst2UI | CCWGG | 1 cut(s) | 1457 |
| Bst4CI | ACNGT | 1 cut(s) | 977 |
| Bst6I | CTCTTC | 1 cut(s) | 766 |
| BstACI | GRCGYC | 1 cut(s) | 52 |
| BstBI | TTCGAA | 1 cut(s) | 542 |
| BstC8I | GCNNGC | 6 cut(s) | 20, 263, 267, 338, 837, 1237 |
| BstDEI | CTNAG | 7 cut(s) | 401, 416, 476, 751, 897, 984, 1072 |
| BstDSI | CCRYGG | 1 cut(s) | 47 |
| BstF5I | GGATG | 9 cut(s) | 10, 106, 730, 746, 1069, 1216, 1307, 1449, 1465 |
| BstFNI | CGCG | 5 cut(s) | 49, 79, 157, 172, 174 |
| BstH2I | RGCGCY | 1 cut(s) | 55 |
| BstHHI | GCGC | 4 cut(s) | 18, 24, 54, 174 |
| BstKTI | GATC | 9 cut(s) | 121, 320, 359, 435, 730, 805, 891, 1039, 1078 |
| BstMAI | GTCTC | 4 cut(s) | 76, 689, 763, 1382 |
| BstMBI | GATC | 9 cut(s) | 118, 317, 356, 432, 727, 802, 888, 1036, 1075 |
| BstMCI | CGRYCG | 4 cut(s) | 187, 256, 359, 431 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 258, 361, 1439 |
| BstNI | CCWGG | 1 cut(s) | 1457 |
| BstNSI | RCATGY | 3 cut(s) | 22, 583, 918 |
| BstSCI | CCNGG | 3 cut(s) | 222, 280, 1455 |
| BstSFI | CTRYAG | 1 cut(s) | 301 |
| BstUI | CGCG | 5 cut(s) | 49, 79, 157, 172, 174 |
| BstV1I | GCAGC | 3 cut(s) | 82, 507, 1248 |
| BstV2I | GAAGAC | 2 cut(s) | 861, 1221 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 501 |
| BstZI | CGGCCG | 3 cut(s) | 184, 253, 428 |
| BsuRI | GGCC | 9 cut(s) | 186, 220, 255, 336, 364, 430, 953, 1051, 1442 |
| BtgI | CCRYGG | 1 cut(s) | 47 |
| BtgZI | GCGATG | 1 cut(s) | 881 |
| BtrI | CACGTC | 2 cut(s) | 70, 448 |
| BtsCI | GGATG | 9 cut(s) | 10, 106, 730, 746, 1069, 1216, 1307, 1449, 1465 |
| BtsIMutI | CAGTG | 1 cut(s) | 588 |
| BveI | ACCTGC | 1 cut(s) | 914 |
| Cac8I | GCNNGC | 6 cut(s) | 20, 263, 267, 338, 837, 1237 |
| CciI | TCATGA | 1 cut(s) | 1099 |
| CfoI | GCGC | 4 cut(s) | 18, 24, 54, 174 |
| Cfr10I | RCCGGY | 1 cut(s) | 265 |
| Cfr13I | GGNCC | 3 cut(s) | 149, 219, 951 |
| Cfr42I | CCGCGG | 1 cut(s) | 50 |
| CseI | GACGC | 3 cut(s) | 121, 151, 697 |
| Csp6I | GTAC | 2 cut(s) | 491, 912 |
| CviQI | GTAC | 2 cut(s) | 491, 912 |
| DdeI | CTNAG | 7 cut(s) | 401, 416, 476, 751, 897, 984, 1072 |
| DinI | GGCGCC | 1 cut(s) | 53 |
| DpnI | GATC | 9 cut(s) | 120, 319, 358, 434, 729, 804, 890, 1038, 1077 |
| DpnII | GATC | 9 cut(s) | 118, 317, 356, 432, 727, 802, 888, 1036, 1075 |
| EaeI | YGGCCR | 4 cut(s) | 184, 253, 334, 428 |
| EagI | CGGCCG | 3 cut(s) | 184, 253, 428 |
| Eam1104I | CTCTTC | 1 cut(s) | 766 |
| EarI | CTCTTC | 1 cut(s) | 766 |
| EciI | GGCGGA | 1 cut(s) | 257 |
| Ecl136II | GAGCTC | 4 cut(s) | 405, 415, 736, 873 |
| EclXI | CGGCCG | 3 cut(s) | 184, 253, 428 |
| Eco147I | AGGCCT | 2 cut(s) | 1051, 1442 |
| Eco24I | GRGCYC | 5 cut(s) | 407, 417, 738, 875, 1471 |
| Eco32I | GATATC | 1 cut(s) | 310 |
| Eco47I | GGWCC | 1 cut(s) | 149 |
| Eco52I | CGGCCG | 3 cut(s) | 184, 253, 428 |
| Eco53kI | GAGCTC | 4 cut(s) | 405, 415, 736, 873 |
| Eco57I | CTGAAG | 1 cut(s) | 1182 |
| EcoICRI | GAGCTC | 4 cut(s) | 405, 415, 736, 873 |
| EcoRI | GAATTC | 1 cut(s) | 176 |
| EcoRII | CCWGG | 1 cut(s) | 1455 |
| EcoRV | GATATC | 1 cut(s) | 310 |
| EcoT22I | ATGCAT | 1 cut(s) | 1465 |
| EcoT38I | GRGCYC | 5 cut(s) | 407, 417, 738, 875, 1471 |
| EgeI | GGCGCC | 1 cut(s) | 53 |
| EheI | GGCGCC | 1 cut(s) | 53 |
| Esp3I | CGTCTC | 1 cut(s) | 76 |
| FaqI | GGGAC | 2 cut(s) | 162, 652 |
| FauI | CCCGC | 2 cut(s) | 54, 177 |
| FokI | GGATG | 9 cut(s) | 17, 113, 733, 737, 1076, 1223, 1314, 1436, 1472 |
| FriOI | GRGCYC | 5 cut(s) | 407, 417, 738, 875, 1471 |
| FspAI | RTGCGCAY | 1 cut(s) | 23 |
| FspBI | CTAG | 1 cut(s) | 731 |
| FspI | TGCGCA | 1 cut(s) | 23 |
| GlaI | GCGC | 4 cut(s) | 17, 23, 53, 173 |
| GsuI | CTGGAG | 2 cut(s) | 1101, 1439 |
| HaeII | RGCGCY | 1 cut(s) | 55 |
| HaeIII | GGCC | 9 cut(s) | 186, 220, 255, 336, 364, 430, 953, 1051, 1442 |
| HapII | CCGG | 8 cut(s) | 122, 183, 217, 224, 256, 266, 281, 427 |
| HgaI | GACGC | 3 cut(s) | 121, 151, 697 |
| HhaI | GCGC | 4 cut(s) | 18, 24, 54, 174 |
| Hin1I | GRCGYC | 1 cut(s) | 52 |
| Hin6I | GCGC | 4 cut(s) | 16, 22, 52, 172 |
| HinP1I | GCGC | 4 cut(s) | 16, 22, 52, 172 |
| HinfI | GANTC | 6 cut(s) | 8, 277, 796, 1108, 1192, 1244 |
| HpaII | CCGG | 8 cut(s) | 122, 183, 217, 224, 256, 266, 281, 427 |
| Hpy166II | GTNNAC | 1 cut(s) | 1340 |
| Hpy188I | TCNGA | 8 cut(s) | 322, 409, 440, 479, 898, 985, 1075, 1183 |
| Hpy8I | GTNNAC | 1 cut(s) | 1340 |
| Hpy99I | CGWCG | 4 cut(s) | 329, 332, 394, 397 |
| HpyAV | CCTTC | 6 cut(s) | 208, 367, 472, 986, 1037, 1453 |
| HpyCH4III | ACNGT | 1 cut(s) | 977 |
| HpyCH4IV | ACGT | 3 cut(s) | 69, 138, 447 |
| HpyCH4V | TGCA | 6 cut(s) | 568, 573, 614, 1310, 1396, 1463 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 258, 361, 1439 |
| HpyF3I | CTNAG | 7 cut(s) | 401, 416, 476, 751, 897, 984, 1072 |
| HpySE526I | ACGT | 3 cut(s) | 69, 138, 447 |
| Hsp92I | GRCGYC | 1 cut(s) | 52 |
| HspAI | GCGC | 4 cut(s) | 16, 22, 52, 172 |
| KasI | GGCGCC | 1 cut(s) | 51 |
| Kpn2I | TCCGGA | 1 cut(s) | 121 |
| KroI | GCCGGC | 1 cut(s) | 265 |
| KroNI | GCCGGC | 1 cut(s) | 267 |
| KspI | CCGCGG | 1 cut(s) | 50 |
| Kzo9I | GATC | 9 cut(s) | 118, 317, 356, 432, 727, 802, 888, 1036, 1075 |
| LmnI | GCTCC | 6 cut(s) | 258, 288, 412, 996, 1201, 1406 |
| Lsp1109I | GCAGC | 3 cut(s) | 82, 507, 1248 |
| LweI | GCATC | 2 cut(s) | 569, 1450 |
| MaeI | CTAG | 1 cut(s) | 731 |
| MaeII | ACGT | 3 cut(s) | 69, 138, 447 |
| MalI | GATC | 9 cut(s) | 120, 319, 358, 434, 729, 804, 890, 1038, 1077 |
| MbiI | CCGCTC | 2 cut(s) | 57, 252 |
| MboI | GATC | 9 cut(s) | 118, 317, 356, 432, 727, 802, 888, 1036, 1075 |
| MfeI | CAATTG | 1 cut(s) | 942 |
| MhlI | GDGCHC | 6 cut(s) | 69, 407, 417, 738, 875, 1471 |
| MluCI | AATT | 9 cut(s) | 176, 538, 694, 739, 788, 892, 942, 979, 1311 |
| MluI | ACGCGT | 1 cut(s) | 77 |
| Mly113I | GGCGCC | 1 cut(s) | 52 |
| MlyI | GAGTC | 2 cut(s) | 17, 1102 |
| MmeI | TCCRAC | 3 cut(s) | 408, 1009, 1272 |
| Mph1103I | ATGCAT | 1 cut(s) | 1465 |
| MroI | TCCGGA | 1 cut(s) | 121 |
| MroNI | GCCGGC | 1 cut(s) | 265 |
| MseI | TTAA | 2 cut(s) | 32, 236 |
| MslI | CAYNNNNRTG | 2 cut(s) | 23, 499 |
| MspA1I | CMGCKG | 4 cut(s) | 49, 95, 340, 1235 |
| MspI | CCGG | 8 cut(s) | 122, 183, 217, 224, 256, 266, 281, 427 |
| MspR9I | CCNGG | 3 cut(s) | 224, 282, 1457 |
| MunI | CAATTG | 1 cut(s) | 942 |
| MvaI | CCWGG | 1 cut(s) | 1457 |
| MvnI | CGCG | 5 cut(s) | 49, 79, 157, 172, 174 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 258, 361, 1439 |
| NaeI | GCCGGC | 1 cut(s) | 267 |
| NarI | GGCGCC | 1 cut(s) | 52 |
| NciI | CCSGG | 2 cut(s) | 224, 282 |
| NdeII | GATC | 9 cut(s) | 118, 317, 356, 432, 727, 802, 888, 1036, 1075 |
| NgoMIV | GCCGGC | 1 cut(s) | 265 |
| NlaIV | GGNNCC | 3 cut(s) | 53, 150, 221 |
| NmeAIII | GCCGAG | 1 cut(s) | 88 |
| NsbI | TGCGCA | 1 cut(s) | 23 |
| NsiI | ATGCAT | 1 cut(s) | 1465 |
| NspI | RCATGY | 3 cut(s) | 22, 583, 918 |
| NspV | TTCGAA | 1 cut(s) | 542 |
| PaeI | GCATGC | 1 cut(s) | 22 |
| PagI | TCATGA | 1 cut(s) | 1099 |
| PaqCI | CACCTGC | 1 cut(s) | 914 |
| PceI | AGGCCT | 2 cut(s) | 1051, 1442 |
| PciI | ACATGT | 1 cut(s) | 914 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 123, 444 |
| PdiI | GCCGGC | 1 cut(s) | 267 |
| PfeI | GAWTC | 4 cut(s) | 277, 796, 1192, 1244 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 604 |
| PfoI | TCCNGGA | 1 cut(s) | 1455 |
| Ple19I | CGATCG | 1 cut(s) | 359 |
| PleI | GAGTC | 2 cut(s) | 16, 1102 |
| PluTI | GGCGCC | 1 cut(s) | 55 |
| PpsI | GAGTC | 2 cut(s) | 16, 1102 |
| PscI | ACATGT | 1 cut(s) | 914 |
| PshBI | ATTAAT | 1 cut(s) | 32 |
| Psp124BI | GAGCTC | 4 cut(s) | 407, 417, 738, 875 |
| Psp6I | CCWGG | 1 cut(s) | 1455 |
| PspGI | CCWGG | 1 cut(s) | 1455 |
| PspN4I | GGNNCC | 3 cut(s) | 53, 150, 221 |
| PspPI | GGNCC | 3 cut(s) | 149, 219, 951 |
| PvuI | CGATCG | 1 cut(s) | 359 |
| PvuII | CAGCTG | 1 cut(s) | 1235 |
| RsaI | GTAC | 2 cut(s) | 492, 913 |
| RsaNI | GTAC | 2 cut(s) | 491, 912 |
| RseI | CAYNNNNRTG | 2 cut(s) | 23, 499 |
| SacI | GAGCTC | 4 cut(s) | 407, 417, 738, 875 |
| SacII | CCGCGG | 1 cut(s) | 50 |
| SaqAI | TTAA | 2 cut(s) | 32, 236 |
| Sau3AI | GATC | 9 cut(s) | 118, 317, 356, 432, 727, 802, 888, 1036, 1075 |
| Sau96I | GGNCC | 3 cut(s) | 149, 219, 951 |
| SchI | GAGTC | 2 cut(s) | 17, 1102 |
| ScrFI | CCNGG | 3 cut(s) | 224, 282, 1457 |
| SduI | GDGCHC | 6 cut(s) | 69, 407, 417, 738, 875, 1471 |
| SfaNI | GCATC | 2 cut(s) | 569, 1450 |
| SfcI | CTRYAG | 1 cut(s) | 301 |
| SfoI | GGCGCC | 1 cut(s) | 53 |
| Sfr303I | CCGCGG | 1 cut(s) | 50 |
| SfuI | TTCGAA | 1 cut(s) | 542 |
| SgrBI | CCGCGG | 1 cut(s) | 50 |
| SinI | GGWCC | 1 cut(s) | 149 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 23, 499 |
| SphI | GCATGC | 1 cut(s) | 22 |
| Sse9I | AATT | 9 cut(s) | 176, 538, 694, 739, 788, 892, 942, 979, 1311 |
| SseBI | AGGCCT | 2 cut(s) | 1051, 1442 |
| SspDI | GGCGCC | 1 cut(s) | 51 |
| SspMI | CTAG | 1 cut(s) | 731 |
| SstI | GAGCTC | 4 cut(s) | 407, 417, 738, 875 |
| StuI | AGGCCT | 2 cut(s) | 1051, 1442 |
| StyD4I | CCNGG | 3 cut(s) | 222, 280, 1455 |
| TaaI | ACNGT | 1 cut(s) | 977 |
| TaiI | ACGT | 3 cut(s) | 72, 141, 450 |
| TaqI | TCGA | 8 cut(s) | 117, 347, 359, 371, 512, 542, 687, 703 |
| TasI | AATT | 9 cut(s) | 176, 538, 694, 739, 788, 892, 942, 979, 1311 |
| TauI | GCSGC | 7 cut(s) | 52, 57, 95, 157, 189, 255, 336 |
| TfiI | GAWTC | 4 cut(s) | 277, 796, 1192, 1244 |
| Tru1I | TTAA | 2 cut(s) | 32, 236 |
| Tru9I | TTAA | 2 cut(s) | 32, 236 |
| TscAI | CASTG | 1 cut(s) | 595 |
| TseI | GCWGC | 3 cut(s) | 95, 520, 1261 |
| TspRI | CASTG | 1 cut(s) | 595 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 604 |
| VpaK11BI | GGWCC | 1 cut(s) | 149 |
| VspI | ATTAAT | 1 cut(s) | 32 |
| XapI | RAATTY | 3 cut(s) | 176, 538, 788 |
| XbaI | TCTAGA | 1 cut(s) | 730 |
| XceI | RCATGY | 3 cut(s) | 22, 583, 918 |
| XspI | CTAG | 1 cut(s) | 731 |
| Zsp2I | ATGCAT | 1 cut(s) | 1465 |