Rh5AG117000

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0006648
Physical Location & Seq
Reverse (-)
10856458 .. 10861923
5466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG117000.1

Sequence Viewer

Length: 1191 bp
ATGGATGATTCGTGGCGCATGCGCATGGGAATGCCGAGCGTGCCCGGCCGGCGCTCTGGCGCAGACCGAACCTTCACGCGCTCGGTATTCCCAGCATGTTCGGGGGTCGCCACAACTCTTCAAGCGGACGACTTCGCCGACGTGTTTGGGGGACCGCCACGGAGCGTCCTCCCGCGACAATCTTCCGGCTGCTCCACTTCTTTCTGCGAGGAGATTTTCCAGCCGGAGTTCGTCTCTACATCGGATAAGAGGTGCCGGAACTTGCCGGAGTTCAGGATTCCGGCGAGGAGCGAGGGGTTCTATAGTGATATCTTTGGATCGGACGATGAGTTCCAGCGGAGGTCGAGAGAGCGGTCGAGGCCGAACTCCAAGGCCAAGTCGAATTCTTCTTCCGTGCTGAGCTCGGAGGAGCTGAGTCCTCTGCAGCCGGTCATCGGCGATGACGTGGCGTTGTCGTCCTTCGCTTCGAAGCTCAGGCCCATAAATGTAAGATGGGACTCATCGACCATGAAGCCCGCCATGGAACATTCAAAGAAACAAGGAATACCGGCAGGTGTTCATTGCAGTCATCCTTCATTCATCGAAAAACAAAATAACGAAAATGCATACGATGAACATACTAGAGCCTCCTACTTTGGATTCACACGAAAGGTTTTGTCCCCGGAAACCATTAGTATCGAACCCAGTTCATTTCGAAGTGTCAAGCTATCCACGGAGGATCTTGAACCACTCAACTCCCCTTCATCGGAAGTCTCTTCGATTTGTCAAGAACATGAGGCCAAAACGGGGATTCTTCATGATCATGTTTTGCCAGGAAAAGAAGTGGGGGTGCTAGAACAAGAAGAACTAGATGATGATGATGATGATGATGAAGTGATGAGCTCTTATGTGATTGAGATCAATTCTGACCATAGAGAGGGTACATGTGAAGAAGTTAACCTTGAAGAAGCAATTGCTTGGGCTAAACAGAAGTTTCAAACGCATGGTGCTTCTGAAAAAGAATCAAGCATGACAGCTCATGATCACAATGAGCAGTCCATTGAAATGGATGAAGGAAGGCCTAATGTGGATGAATGCTCGGATCAACAGAGAGATGAACACGAAATGACTAGAACTCCCCAGGTATTAGTTTACAAGGGATTCAACAATACAACATTATTTGCAGTTACTGTACGTATCAATTCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

396

Amino Acids

44.37

Weight (kDa)

4.9

Isoelectric Point (pI)

67.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 542
Acc16I TGCGCA 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 542
AccB1I GGYRCC 1 cut(s) 252
AccBSI CCGCTC 1 cut(s) 352
AccII CGCG 2 cut(s) 79, 175
AciI CCGC 6 cut(s) 125, 155, 173, 337, 352, 516
AclWI GGATC 3 cut(s) 325, 726, 1089
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 382
AfaI GTAC 2 cut(s) 922, 1173
AfiI CCNNNNNNNGG 4 cut(s) 434, 745, 786, 916
AflIII ACRYGT 2 cut(s) 141, 923
AgsI TTSAA 7 cut(s) 122, 531, 725, 944, 977, 1043, 1144
AjiI CACGTC 2 cut(s) 142, 445
AjnI CCWGG 2 cut(s) 811, 1119
AloI GAACNNNNNNTCC 2 cut(s) 314, 346
AluBI AGCT 6 cut(s) 402, 412, 472, 706, 882, 1016
AluI AGCT 6 cut(s) 402, 412, 472, 706, 882, 1016
Alw21I GWGCWC 2 cut(s) 404, 884
Alw26I GTCTC 2 cut(s) 238, 757
AlwI GGATC 3 cut(s) 325, 726, 1089
AlwNI CAGNNNCTG 1 cut(s) 1169
AoxI GGCC 6 cut(s) 46, 359, 372, 476, 777, 1058
ApeKI GCWGC 2 cut(s) 189, 424
ApoI RAATTY 1 cut(s) 382
AspLEI GCGC 5 cut(s) 18, 24, 54, 62, 81
AspS9I GGNCC 2 cut(s) 152, 477
AsuC2I CCSGG 2 cut(s) 45, 662
AsuII TTCGAA 2 cut(s) 467, 694
AvaII GGWCC 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 252
BanII GRGCYC 2 cut(s) 404, 884
Bbv12I GWGCWC 2 cut(s) 404, 884
BbvI GCAGC 2 cut(s) 176, 436
BccI CCATC 1 cut(s) 486
BciT130I CCWGG 2 cut(s) 813, 1121
BclI TGATCA 2 cut(s) 799, 1021
BcnI CCSGG 2 cut(s) 45, 662
BcoDI GTCTC 2 cut(s) 238, 757
BfaI CTAG 4 cut(s) 621, 833, 848, 1110
BfmI CTRYAG 2 cut(s) 301, 422
BfoI RGCGCY 1 cut(s) 55
BfuAI ACCTGC 1 cut(s) 542
BglI GCCNNNNNGGC 1 cut(s) 49
BisI GCNGC 2 cut(s) 190, 425
BlpI GCTNAGC 1 cut(s) 398
BlsI GCNGC 2 cut(s) 191, 426
Bme1390I CCNGG 4 cut(s) 45, 662, 813, 1121
Bme18I GGWCC 1 cut(s) 152
BmgBI CACGTC 2 cut(s) 142, 445
BmgT120I GGNCC 2 cut(s) 152, 477
BmiI GGNNCC 2 cut(s) 153, 254
BmrFI CCNGG 4 cut(s) 45, 662, 813, 1121
BmrI ACTGGG 1 cut(s) 678
BmuI ACTGGG 1 cut(s) 678
BplI GAGNNNNNCTC 2 cut(s) 218, 250
Bpu10I CCTNAGC 1 cut(s) 473
Bpu1102I GCTNAGC 1 cut(s) 398
Bpu14I TTCGAA 2 cut(s) 467, 694
BpuMI CCSGG 2 cut(s) 45, 662
BsaAI YACGTR 1 cut(s) 1175
BsaBI GATNNNNATC 1 cut(s) 896
BsaJI CCNNGG 6 cut(s) 158, 369, 519, 660, 711, 1119
BsaXI ACNNNNNCTCC 2 cut(s) 1099, 1129
Bsc4I CCNNNNNNNGG 4 cut(s) 434, 745, 786, 916
Bse118I RCCGGY 3 cut(s) 48, 427, 547
Bse1I ACTGG 1 cut(s) 684
Bse3DI GCAATG 1 cut(s) 559
Bse8I GATNNNNATC 1 cut(s) 896
BseBI CCWGG 2 cut(s) 813, 1121
BseDI CCNNGG 6 cut(s) 158, 369, 519, 660, 711, 1119
BseGI GGATG 4 cut(s) 10, 568, 1054, 1075
BseJI GATNNNNATC 1 cut(s) 896
BseLI CCNNNNNNNGG 4 cut(s) 434, 745, 786, 916
BseMI GCAATG 1 cut(s) 559
BseMII CTCAG 3 cut(s) 389, 404, 487
BseNI ACTGG 1 cut(s) 684
BseRI GAGGAG 3 cut(s) 224, 301, 422
BseSI GKGCMC 1 cut(s) 45
BseX3I CGGCCG 1 cut(s) 46
BseXI GCAGC 2 cut(s) 176, 436
BseYI CCCAGC 1 cut(s) 91
Bsh1236I CGCG 2 cut(s) 79, 175
Bsh1285I CGRYCG 2 cut(s) 49, 356
BshFI GGCC 6 cut(s) 48, 361, 374, 478, 779, 1060
BshNI GGYRCC 1 cut(s) 252
BsiEI CGRYCG 2 cut(s) 49, 356
BsiHKAI GWGCWC 2 cut(s) 404, 884
BslFI GGGAC 3 cut(s) 165, 509, 643
BslI CCNNNNNNNGG 4 cut(s) 434, 745, 786, 916
BsmAI GTCTC 2 cut(s) 238, 757
BsmBI CGTCTC 1 cut(s) 238
BsmFI GGGAC 3 cut(s) 165, 509, 643
BsmI GAATGC 2 cut(s) 36, 1079
BsnI GGCC 6 cut(s) 48, 361, 374, 478, 779, 1060
Bsp119I TTCGAA 2 cut(s) 467, 694
Bsp1286I GDGCHC 3 cut(s) 45, 404, 884
Bsp143I GATC 6 cut(s) 317, 718, 799, 897, 1021, 1081
Bsp1720I GCTNAGC 1 cut(s) 398
Bsp19I CCATGG 1 cut(s) 519
BspACI CCGC 6 cut(s) 125, 155, 173, 337, 352, 516
BspANI GGCC 6 cut(s) 48, 361, 374, 478, 779, 1060
BspCNI CTCAG 3 cut(s) 390, 405, 486
BspFNI CGCG 2 cut(s) 79, 175
BspHI TCATGA 2 cut(s) 796, 1018
BspLI GGNNCC 2 cut(s) 153, 254
BspMAI CTGCAG 1 cut(s) 426
BspMI ACCTGC 1 cut(s) 542
BspPI GGATC 3 cut(s) 325, 726, 1089
BspT104I TTCGAA 2 cut(s) 467, 694
BspT107I GGYRCC 1 cut(s) 252
BsrBI CCGCTC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 559
BsrFI RCCGGY 3 cut(s) 48, 427, 547
BsrI ACTGG 1 cut(s) 684
BssAI RCCGGY 3 cut(s) 48, 427, 547
BssECI CCNNGG 6 cut(s) 158, 369, 519, 660, 711, 1119
BssMI GATC 6 cut(s) 317, 718, 799, 897, 1021, 1081
BssT1I CCWWGG 2 cut(s) 369, 519
Bst2UI CCWGG 2 cut(s) 813, 1121
Bst4CI ACNGT 1 cut(s) 1171
Bst6I CTCTTC 2 cut(s) 123, 760
BstBAI YACGTR 1 cut(s) 1175
BstBI TTCGAA 2 cut(s) 467, 694
BstC8I GCNNGC 4 cut(s) 20, 41, 50, 516
BstDEI CTNAG 3 cut(s) 398, 413, 473
BstDSI CCRYGG 3 cut(s) 158, 519, 711
BstF5I GGATG 4 cut(s) 10, 568, 1054, 1075
BstFNI CGCG 2 cut(s) 79, 175
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 5 cut(s) 18, 24, 54, 62, 81
BstKTI GATC 6 cut(s) 320, 721, 802, 900, 1024, 1084
BstMAI GTCTC 2 cut(s) 238, 757
BstMBI GATC 6 cut(s) 317, 718, 799, 897, 1021, 1081
BstMCI CGRYCG 2 cut(s) 49, 356
BstMWI GCNNNNNNNGC 4 cut(s) 40, 45, 49, 358
BstNI CCWGG 2 cut(s) 813, 1121
BstNSI RCATGY 3 cut(s) 22, 99, 927
BstSCI CCNGG 4 cut(s) 43, 660, 811, 1119
BstSFI CTRYAG 2 cut(s) 301, 422
BstSLI GKGCMC 1 cut(s) 45
BstSNI TACGTA 1 cut(s) 1175
BstUI CGCG 2 cut(s) 79, 175
BstV1I GCAGC 2 cut(s) 176, 436
BstX2I RGATCY 1 cut(s) 718
BstXI CCANNNNNNTGG 1 cut(s) 1045
BstYI RGATCY 1 cut(s) 718
BstZI CGGCCG 1 cut(s) 46
BsuRI GGCC 6 cut(s) 48, 361, 374, 478, 779, 1060
BtgI CCRYGG 3 cut(s) 158, 519, 711
BtgZI GCGATG 1 cut(s) 453
BtrI CACGTC 2 cut(s) 142, 445
BtsCI GGATG 4 cut(s) 10, 568, 1054, 1075
BveI ACCTGC 1 cut(s) 542
Cac8I GCNNGC 4 cut(s) 20, 41, 50, 516
CaiI CAGNNNCTG 1 cut(s) 1169
CciI TCATGA 2 cut(s) 796, 1018
CfoI GCGC 5 cut(s) 18, 24, 54, 62, 81
Cfr10I RCCGGY 3 cut(s) 48, 427, 547
Cfr13I GGNCC 2 cut(s) 152, 477
CseI GACGC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 921, 1172
CviQI GTAC 2 cut(s) 921, 1172
DdeI CTNAG 3 cut(s) 398, 413, 473
DpnI GATC 6 cut(s) 319, 720, 801, 899, 1023, 1083
DpnII GATC 6 cut(s) 317, 718, 799, 897, 1021, 1081
EaeI YGGCCR 1 cut(s) 46
EagI CGGCCG 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 123, 760
EarI CTCTTC 2 cut(s) 123, 760
Ecl136II GAGCTC 2 cut(s) 402, 882
EclXI CGGCCG 1 cut(s) 46
Eco105I TACGTA 1 cut(s) 1175
Eco130I CCWWGG 2 cut(s) 369, 519
Eco147I AGGCCT 1 cut(s) 1060
Eco24I GRGCYC 2 cut(s) 404, 884
Eco32I GATATC 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 152
Eco52I CGGCCG 1 cut(s) 46
Eco53kI GAGCTC 2 cut(s) 402, 882
EcoICRI GAGCTC 2 cut(s) 402, 882
EcoRI GAATTC 1 cut(s) 382
EcoRII CCWGG 2 cut(s) 811, 1119
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 2 cut(s) 369, 519
EcoT22I ATGCAT 1 cut(s) 607
EcoT38I GRGCYC 2 cut(s) 404, 884
ErhI CCWWGG 2 cut(s) 369, 519
Esp3I CGTCTC 1 cut(s) 238
FalI AAGNNNNNCTT 2 cut(s) 924, 956
FaqI GGGAC 3 cut(s) 165, 509, 643
FauI CCCGC 2 cut(s) 180, 523
FbaI TGATCA 2 cut(s) 799, 1021
Fnu4HI GCNGC 2 cut(s) 190, 425
FokI GGATG 4 cut(s) 17, 555, 1061, 1082
FriOI GRGCYC 2 cut(s) 404, 884
Fsp4HI GCNGC 2 cut(s) 190, 425
FspAI RTGCGCAY 1 cut(s) 23
FspBI CTAG 4 cut(s) 621, 833, 848, 1110
FspI TGCGCA 1 cut(s) 23
GlaI GCGC 5 cut(s) 17, 23, 53, 61, 80
GluI GCNGC 2 cut(s) 190, 425
GsaI CCCAGC 1 cut(s) 95
HaeII RGCGCY 1 cut(s) 55
HaeIII GGCC 6 cut(s) 48, 361, 374, 478, 779, 1060
HgaI GACGC 1 cut(s) 154
HhaI GCGC 5 cut(s) 18, 24, 54, 62, 81
Hin6I GCGC 5 cut(s) 16, 22, 52, 60, 79
HinP1I GCGC 5 cut(s) 16, 22, 52, 60, 79
HincII GTYRAC 1 cut(s) 937
HindII GTYRAC 1 cut(s) 937
HinfI GANTC 8 cut(s) 8, 277, 415, 497, 639, 790, 1001, 1140
HpaI GTTAAC 1 cut(s) 937
Hpy166II GTNNAC 2 cut(s) 937, 1132
Hpy188I TCNGA 7 cut(s) 244, 322, 406, 748, 907, 994, 1081
Hpy188III TCNNGA 6 cut(s) 274, 345, 722, 767, 797, 1019
Hpy8I GTNNAC 2 cut(s) 937, 1132
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 6 cut(s) 82, 469, 582, 750, 1046, 1050
HpyCH4III ACNGT 1 cut(s) 1171
HpyCH4IV ACGT 3 cut(s) 141, 444, 1174
HpyCH4V TGCA 4 cut(s) 424, 564, 605, 1163
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 45, 49, 358
HpyF3I CTNAG 3 cut(s) 398, 413, 473
HpySE526I ACGT 3 cut(s) 141, 444, 1174
HspAI GCGC 5 cut(s) 16, 22, 52, 60, 79
KroI GCCGGC 1 cut(s) 48
KroNI GCCGGC 1 cut(s) 50
Ksp22I TGATCA 2 cut(s) 799, 1021
KspAI GTTAAC 1 cut(s) 937
Kzo9I GATC 6 cut(s) 317, 718, 799, 897, 1021, 1081
LmnI GCTCC 4 cut(s) 162, 197, 288, 409
Lsp1109I GCAGC 2 cut(s) 176, 436
MaeI CTAG 4 cut(s) 621, 833, 848, 1110
MaeII ACGT 3 cut(s) 141, 444, 1174
MaeIII GTNAC 1 cut(s) 1165
MalI GATC 6 cut(s) 319, 720, 801, 899, 1023, 1083
MbiI CCGCTC 1 cut(s) 352
MboI GATC 6 cut(s) 317, 718, 799, 897, 1021, 1081
MboII GAAGA 9 cut(s) 110, 174, 378, 381, 747, 785, 854, 941, 956
MfeI CAATTG 1 cut(s) 951
MflI RGATCY 1 cut(s) 718
MhlI GDGCHC 3 cut(s) 45, 404, 884
MluCI AATT 4 cut(s) 382, 901, 951, 1180
MlyI GAGTC 2 cut(s) 424, 491
Mph1103I ATGCAT 1 cut(s) 607
MroNI GCCGGC 1 cut(s) 48
MseI TTAA 1 cut(s) 936
MslI CAYNNNNRTG 4 cut(s) 23, 29, 801, 1043
MspA1I CMGCKG 1 cut(s) 337
MspR9I CCNGG 4 cut(s) 45, 662, 813, 1121
MunI CAATTG 1 cut(s) 951
Mva1269I GAATGC 2 cut(s) 36, 1079
MvaI CCWGG 2 cut(s) 813, 1121
MvnI CGCG 2 cut(s) 79, 175
MwoI GCNNNNNNNGC 4 cut(s) 40, 45, 49, 358
NaeI GCCGGC 1 cut(s) 50
NciI CCSGG 2 cut(s) 45, 662
NcoI CCATGG 1 cut(s) 519
NdeII GATC 6 cut(s) 317, 718, 799, 897, 1021, 1081
NgoMIV GCCGGC 1 cut(s) 48
NlaIV GGNNCC 2 cut(s) 153, 254
NmeAIII GCCGAG 1 cut(s) 60
NsbI TGCGCA 1 cut(s) 23
NsiI ATGCAT 1 cut(s) 607
NspI RCATGY 3 cut(s) 22, 99, 927
NspV TTCGAA 2 cut(s) 467, 694
PaeI GCATGC 1 cut(s) 22
PagI TCATGA 2 cut(s) 796, 1018
PaqCI CACCTGC 1 cut(s) 542
PceI AGGCCT 1 cut(s) 1060
PciI ACATGT 1 cut(s) 923
PcsI WCGNNNNNNNCGW 2 cut(s) 135, 441
PctI GAATGC 2 cut(s) 36, 1079
PdiI GCCGGC 1 cut(s) 50
PfeI GAWTC 6 cut(s) 8, 277, 639, 790, 1001, 1140
PkrI GCNGC 2 cut(s) 191, 426
PleI GAGTC 2 cut(s) 423, 491
PpsI GAGTC 2 cut(s) 423, 491
Ppu21I YACGTR 1 cut(s) 1175
PscI ACATGT 1 cut(s) 923
Psp124BI GAGCTC 2 cut(s) 404, 884
Psp6I CCWGG 2 cut(s) 811, 1119
PspFI CCCAGC 1 cut(s) 91
PspGI CCWGG 2 cut(s) 811, 1119
PspN4I GGNNCC 2 cut(s) 153, 254
PspPI GGNCC 2 cut(s) 152, 477
PstI CTGCAG 1 cut(s) 426
PstNI CAGNNNCTG 1 cut(s) 1169
PsuI RGATCY 1 cut(s) 718
RsaI GTAC 2 cut(s) 922, 1173
RsaNI GTAC 2 cut(s) 921, 1172
RseI CAYNNNNRTG 4 cut(s) 23, 29, 801, 1043
SacI GAGCTC 2 cut(s) 404, 884
SaqAI TTAA 1 cut(s) 936
SatI GCNGC 2 cut(s) 190, 425
Sau3AI GATC 6 cut(s) 317, 718, 799, 897, 1021, 1081
Sau96I GGNCC 2 cut(s) 152, 477
SchI GAGTC 2 cut(s) 424, 491
ScrFI CCNGG 4 cut(s) 45, 662, 813, 1121
SduI GDGCHC 3 cut(s) 45, 404, 884
SfcI CTRYAG 2 cut(s) 301, 422
SfuI TTCGAA 2 cut(s) 467, 694
SinI GGWCC 1 cut(s) 152
SmiMI CAYNNNNRTG 4 cut(s) 23, 29, 801, 1043
SnaBI TACGTA 1 cut(s) 1175
SphI GCATGC 1 cut(s) 22
Sse9I AATT 4 cut(s) 382, 901, 951, 1180
SseBI AGGCCT 1 cut(s) 1060
SsiI CCGC 6 cut(s) 125, 155, 173, 337, 352, 516
SspMI CTAG 4 cut(s) 621, 833, 848, 1110
SstI GAGCTC 2 cut(s) 404, 884
StuI AGGCCT 1 cut(s) 1060
StyD4I CCNGG 4 cut(s) 43, 660, 811, 1119
StyI CCWWGG 2 cut(s) 369, 519
TaaI ACNGT 1 cut(s) 1171
TaiI ACGT 3 cut(s) 144, 447, 1177
TaqI TCGA 9 cut(s) 344, 356, 380, 467, 503, 582, 678, 694, 758
TaqII GACCGA 1 cut(s) 81
TasI AATT 4 cut(s) 382, 901, 951, 1180
TfiI GAWTC 6 cut(s) 8, 277, 639, 790, 1001, 1140
Tru1I TTAA 1 cut(s) 936
Tru9I TTAA 1 cut(s) 936
TseI GCWGC 2 cut(s) 189, 424
TspGWI ACGGA 3 cut(s) 175, 382, 728
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 1 cut(s) 382
XceI RCATGY 3 cut(s) 22, 99, 927
XspI CTAG 4 cut(s) 621, 833, 848, 1110
Zsp2I ATGCAT 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.