FvH4_3g05110

CBL-interacting serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
2958157 .. 2964416
6260 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05110.t2

Sequence Viewer

Length: 1404 bp
ATGGCGGCGAGGGCGGCGGGCGTTGGGAGTCGGACTCGGGTCGGGAGGTACGATCTGGGTCGGACCCTAGGGGAGGGCAATTTCGCCAAGGTCAAATTTGCGAGGAACGTCGAGACTGGTGAGAATTTCGCTATTAAGATTCTGGATAAAGAGAAGGTGCTCAAGCACAAGATGATCGGCCAGATCAAACGAGAAATATCAACGATGAAGTTAATTAGACATCCCAATGTAATCCGTATGTATGAGGTGATGGCTAGCAAGACAAAAATATACATCGTTTTGGAGTTTGTGACTGGTGGGGAACTATTTGACAAAATTGCAAGTAAAGGAAGATTGAAAGAAGACGAAGCAAGGAAGTATTTTCAGCAGCTTATAAATGCAGTGGATTACTGTCATAGCAGAGGTGTTTTCCATAGAGACCTGAAGCCAGAGAATTTGCTGCTGGATGTCAATGGAGTGCTTAAAGTTTCAGATTTTGGGCTCAGTGCGCTGCCTCAGCAAGTTCGAGAAGATGGCTTACTTCACACAACATGTGGGACACCAAATTATGTTGCCCCTGAGGTCATCAACAACAAAGGGTATGATGGAGCGAAGGCAGATCTATGGTCTTGTGGCGTTATTCTTTATGTCTTGATGGCTGGCTATTTGCCTTTTGAAGATTCCAATCTCATGGCATTATATAAAAAGATATTCAAGGCTGAGTTCTCGTGTCCTCCATGGTTCTCCTCAAGTGCAAAGAAGCTAATTAAGAGAATCTTGGACCCTAACCCCTTGACACGAATTACATTTGCTGAGGTCATCGAGAATGAGTGGTTCAAGAAAGGGTATAAACCACCTAGTTTTGAACAAGTTGATGTTAGTCTCGATGATGTGGATGCAATATTCAATGATCCTGGGGATTCTCAGAACTTTGTAGTTGAGAAGCGAGAGGAACGACACGTGCCCGTTACCATGAATGCCTTTGAGCTTATCTCTACATCTCAGGGCCTGAATCTTAATAGTCTTTTTGAGAAACAGATGGAACTTGTTAAACGAGAAACAAGATTCACATCCAAACGTCCTGCTAATGAGATTATTTCTAAAATTGAGGAAGCTGCAGCACCTTTGGGTTTTGGTGTGAAGAAAAATAATTTTAAGTTGAAGCTTCAAGGTGAAAAAACTGGTCGTAAAGGTCATCTATCTGTTGCAACAGAGATTTTTGAGGTGGCCCCTTCACTCTACATGGTTGAAGTCCGCAAGTCAGGGGGAGACACCCTGGAATTTCACAATTTCTATAAGAACCTTTCAACGGGGCTGAAGGATATTGTCTGGAAGTCAGGAGATGATGCAAGGAAGGAGGCAGAATTTGGTTCCGCTTCTAGTTCTGGTACTGCCGCTGGTGCTGGTGCTGTGTCATCTACATGA

Protein Analysis

468

Amino Acids

52.16

Weight (kDa)

9.06

Isoelectric Point (pI)

30.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 3 - 189 1e-55 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 4 - 185 1.2e-25 Protein tyrosine and serine/threonine kinase
Kinase-like PF14531 25 - 142 3.4e-06 Kinase-like
NAF PF03822 232 - 292 7e-23 NAF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AciI CCGC 6 cut(s) 5, 14, 17, 1234, 1353, 1374
AclWI GGATC 1 cut(s) 884
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 5 cut(s) 95, 124, 433, 1259, 1343
AcuI CTGAAG 2 cut(s) 443, 1316
AcvI CACGTG 1 cut(s) 940
AfaI GTAC 2 cut(s) 50, 1369
AfiI CCNNNNNNNGG 2 cut(s) 73, 1288
AflIII ACRYGT 2 cut(s) 530, 937
AjnI CCWGG 2 cut(s) 892, 1254
AluBI AGCT 5 cut(s) 370, 742, 967, 1094, 1144
AluI AGCT 5 cut(s) 370, 742, 967, 1094, 1144
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 4 cut(s) 107, 411, 866, 1242
AlwI GGATC 1 cut(s) 884
AlwNI CAGNNNCTG 1 cut(s) 988
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 3 cut(s) 178, 985, 1206
ApeKI GCWGC 5 cut(s) 367, 439, 490, 1094, 1097
ApoI RAATTY 5 cut(s) 95, 124, 433, 1259, 1343
AspA2I CCTAGG 1 cut(s) 67
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 4 cut(s) 63, 760, 985, 1207
AsuHPI GGTGA 3 cut(s) 131, 259, 1163
AsuNHI GCTAGC 1 cut(s) 254
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 2 cut(s) 63, 760
AvrII CCTAGG 1 cut(s) 67
AxyI CCTNAGG 1 cut(s) 558
BaeGI GKGCMC 1 cut(s) 945
BanII GRGCYC 1 cut(s) 483
BarI GAAGNNNNNNTAC 2 cut(s) 501, 533
BauI CACGAG 1 cut(s) 706
BbrPI CACGTG 1 cut(s) 940
BbsI GAAGAC 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 162
BbvCI CCTCAGC 2 cut(s) 495, 792
BbvI GCAGC 5 cut(s) 379, 426, 477, 1081, 1109
BccI CCATC 5 cut(s) 244, 506, 578, 628, 1012
BciT130I CCWGG 2 cut(s) 894, 1256
BcoDI GTCTC 4 cut(s) 107, 411, 866, 1242
BfaI CTAG 4 cut(s) 68, 255, 837, 1359
BfmI CTRYAG 1 cut(s) 1095
BglII AGATCT 1 cut(s) 598
BisI GCNGC 8 cut(s) 6, 15, 368, 440, 491, 1095, 1098, 1374
BlnI CCTAGG 1 cut(s) 67
BlsI GCNGC 8 cut(s) 7, 16, 369, 441, 492, 1096, 1099, 1375
Bme1390I CCNGG 2 cut(s) 894, 1256
Bme18I GGWCC 2 cut(s) 63, 760
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 4 cut(s) 63, 760, 985, 1207
BmiI GGNNCC 4 cut(s) 65, 762, 1209, 1351
BmrFI CCNGG 2 cut(s) 894, 1256
BmsI GCATC 2 cut(s) 865, 1315
BmtI GCTAGC 1 cut(s) 258
BoxI GACNNNNGTC 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 348
BplI GAGNNNNNCTC 4 cut(s) 19, 51, 956, 988
Bpu10I CCTNAGC 2 cut(s) 495, 792
BpuEI CTTGAG 2 cut(s) 146, 712
BsaAI YACGTR 1 cut(s) 940
BsaBI GATNNNNATC 2 cut(s) 663, 1048
BsaI GGTCTC 1 cut(s) 411
BsaJI CCNNGG 5 cut(s) 67, 87, 716, 893, 1254
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 1288
Bse1I ACTGG 3 cut(s) 121, 298, 1165
Bse21I CCTNAGG 1 cut(s) 558
Bse8I GATNNNNATC 2 cut(s) 663, 1048
BseBI CCWGG 2 cut(s) 894, 1256
BseDI CCNNGG 5 cut(s) 67, 87, 716, 893, 1254
BseGI GGATG 4 cut(s) 220, 451, 880, 1049
BseJI GATNNNNATC 2 cut(s) 663, 1048
BseLI CCNNNNNNNGG 2 cut(s) 73, 1288
BseMII CTCAG 7 cut(s) 496, 509, 549, 690, 783, 917, 995
BseNI ACTGG 3 cut(s) 121, 298, 1165
BseRI GAGGAG 1 cut(s) 715
BseSI GKGCMC 1 cut(s) 945
BseXI GCAGC 5 cut(s) 379, 426, 477, 1081, 1109
BshFI GGCC 3 cut(s) 180, 987, 1208
BsiHKAI GWGCWC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 36
BslFI GGGAC 1 cut(s) 550
BslI CCNNNNNNNGG 2 cut(s) 73, 1288
BsmAI GTCTC 4 cut(s) 107, 411, 866, 1242
BsmFI GGGAC 1 cut(s) 550
BsmI GAATGC 1 cut(s) 961
BsnI GGCC 3 cut(s) 180, 987, 1208
Bso31I GGTCTC 1 cut(s) 411
BsoBI CYCGRG 1 cut(s) 36
Bsp1286I GDGCHC 3 cut(s) 162, 483, 945
Bsp143I GATC 5 cut(s) 52, 174, 183, 598, 889
Bsp19I CCATGG 1 cut(s) 716
BspACI CCGC 6 cut(s) 5, 14, 17, 1234, 1353, 1374
BspANI GGCC 3 cut(s) 180, 987, 1208
BspCNI CTCAG 7 cut(s) 495, 508, 550, 691, 784, 916, 994
BspLI GGNNCC 4 cut(s) 65, 762, 1209, 1351
BspMAI CTGCAG 1 cut(s) 1099
BspOI GCTAGC 1 cut(s) 258
BspPI GGATC 1 cut(s) 884
BspTNI GGTCTC 1 cut(s) 411
BsrI ACTGG 3 cut(s) 121, 298, 1165
BssECI CCNNGG 5 cut(s) 67, 87, 716, 893, 1254
BssMI GATC 5 cut(s) 52, 174, 183, 598, 889
BssSI CACGAG 1 cut(s) 706
BssT1I CCWWGG 3 cut(s) 67, 87, 716
Bst2BI CACGAG 1 cut(s) 706
Bst2UI CCWGG 2 cut(s) 894, 1256
Bst4CI ACNGT 1 cut(s) 392
BstBAI YACGTR 1 cut(s) 940
BstC8I GCNNGC 3 cut(s) 19, 256, 640
BstDEI CTNAG 7 cut(s) 482, 495, 558, 699, 792, 903, 981
BstDSI CCRYGG 1 cut(s) 716
BstENI CCTNNNNNAGG 1 cut(s) 71
BstF5I GGATG 4 cut(s) 220, 451, 880, 1049
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 5 cut(s) 55, 177, 186, 601, 892
BstMAI GTCTC 4 cut(s) 107, 411, 866, 1242
BstMBI GATC 5 cut(s) 52, 174, 183, 598, 889
BstMWI GCNNNNNNNGC 5 cut(s) 11, 14, 487, 496, 1379
BstNI CCWGG 2 cut(s) 894, 1256
BstNSI RCATGY 1 cut(s) 534
BstPAI GACNNNNGTC 1 cut(s) 38
BstSCI CCNGG 2 cut(s) 892, 1254
BstSFI CTRYAG 1 cut(s) 1095
BstSLI GKGCMC 1 cut(s) 945
BstV1I GCAGC 5 cut(s) 379, 426, 477, 1081, 1109
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 598
BstXI CCANNNNNNTGG 1 cut(s) 670
BstYI RGATCY 1 cut(s) 598
Bsu36I CCTNAGG 1 cut(s) 558
BsuRI GGCC 3 cut(s) 180, 987, 1208
BtgI CCRYGG 1 cut(s) 716
BtsCI GGATG 4 cut(s) 220, 451, 880, 1049
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 2 cut(s) 387, 490
Cac8I GCNNGC 3 cut(s) 19, 256, 640
CaiI CAGNNNCTG 1 cut(s) 988
CfoI GCGC 1 cut(s) 490
Cfr13I GGNCC 4 cut(s) 63, 760, 985, 1207
Csp6I GTAC 2 cut(s) 49, 1368
CviAII CATG 6 cut(s) 531, 670, 717, 952, 1222, 1401
CviQI GTAC 2 cut(s) 49, 1368
DdeI CTNAG 7 cut(s) 482, 495, 558, 699, 792, 903, 981
DpnI GATC 5 cut(s) 54, 176, 185, 600, 891
DpnII GATC 5 cut(s) 52, 174, 183, 598, 889
EaeI YGGCCR 1 cut(s) 178
Eco130I CCWWGG 3 cut(s) 67, 87, 716
Eco24I GRGCYC 1 cut(s) 483
Eco31I GGTCTC 1 cut(s) 411
Eco47I GGWCC 2 cut(s) 63, 760
Eco57I CTGAAG 2 cut(s) 443, 1316
Eco72I CACGTG 1 cut(s) 940
Eco81I CCTNAGG 1 cut(s) 558
Eco88I CYCGRG 1 cut(s) 36
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 985
EcoRII CCWGG 2 cut(s) 892, 1254
EcoT14I CCWWGG 3 cut(s) 67, 87, 716
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 3 cut(s) 67, 87, 716
FaeI CATG 6 cut(s) 534, 673, 720, 955, 1225, 1404
FalI AAGNNNNNCTT 2 cut(s) 740, 772
FaqI GGGAC 1 cut(s) 550
FatI CATG 6 cut(s) 530, 669, 716, 951, 1221, 1400
FauI CCCGC 1 cut(s) 10
Fnu4HI GCNGC 8 cut(s) 6, 15, 368, 440, 491, 1095, 1098, 1374
FokI GGATG 4 cut(s) 207, 458, 887, 1036
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 8 cut(s) 6, 15, 368, 440, 491, 1095, 1098, 1374
FspBI CTAG 4 cut(s) 68, 255, 837, 1359
GlaI GCGC 1 cut(s) 489
GluI GCNGC 8 cut(s) 6, 15, 368, 440, 491, 1095, 1098, 1374
HaeIII GGCC 3 cut(s) 180, 987, 1208
HhaI GCGC 1 cut(s) 490
Hin1II CATG 6 cut(s) 534, 673, 720, 955, 1225, 1404
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HindIII AAGCTT 1 cut(s) 1142
HinfI GANTC 8 cut(s) 28, 34, 139, 659, 753, 899, 991, 1044
HphI GGTGA 3 cut(s) 131, 259, 1163
Hpy188I TCNGA 4 cut(s) 33, 63, 472, 906
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 5 cut(s) 148, 586, 1221, 1291, 1327
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4IV ACGT 3 cut(s) 108, 939, 1057
HpyCH4V TGCA 7 cut(s) 320, 380, 734, 878, 1097, 1187, 1328
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 14, 487, 496, 1379
HpyF3I CTNAG 7 cut(s) 482, 495, 558, 699, 792, 903, 981
HpySE526I ACGT 3 cut(s) 108, 939, 1057
Hsp92II CATG 6 cut(s) 534, 673, 720, 955, 1225, 1404
HspAI GCGC 1 cut(s) 488
Kzo9I GATC 5 cut(s) 52, 174, 183, 598, 889
LmnI GCTCC 1 cut(s) 587
Lsp1109I GCAGC 5 cut(s) 379, 426, 477, 1081, 1109
LweI GCATC 2 cut(s) 865, 1315
MaeI CTAG 4 cut(s) 68, 255, 837, 1359
MaeII ACGT 3 cut(s) 108, 939, 1057
MaeIII GTNAC 2 cut(s) 289, 946
MalI GATC 5 cut(s) 54, 176, 185, 600, 891
MboI GATC 5 cut(s) 52, 174, 183, 598, 889
MboII GAAGA 5 cut(s) 342, 353, 521, 668, 1132
MflI RGATCY 1 cut(s) 598
MhlI GDGCHC 3 cut(s) 162, 483, 945
MlyI GAGTC 2 cut(s) 28, 37
MmeI TCCRAC 2 cut(s) 11, 41
MseI TTAA 7 cut(s) 135, 212, 462, 747, 996, 1029, 1134
MslI CAYNNNNRTG 2 cut(s) 225, 1399
MspA1I CMGCKG 1 cut(s) 1376
MspR9I CCNGG 2 cut(s) 894, 1256
Mva1269I GAATGC 1 cut(s) 961
MvaI CCWGG 2 cut(s) 894, 1256
MwoI GCNNNNNNNGC 5 cut(s) 11, 14, 487, 496, 1379
NcoI CCATGG 1 cut(s) 716
NdeII GATC 5 cut(s) 52, 174, 183, 598, 889
NheI GCTAGC 1 cut(s) 254
NlaIII CATG 6 cut(s) 534, 673, 720, 955, 1225, 1404
NlaIV GGNNCC 4 cut(s) 65, 762, 1209, 1351
NmuCI GTSAC 1 cut(s) 289
NspI RCATGY 1 cut(s) 534
PciI ACATGT 1 cut(s) 530
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PctI GAATGC 1 cut(s) 961
PfeI GAWTC 6 cut(s) 139, 659, 753, 899, 991, 1044
PkrI GCNGC 8 cut(s) 7, 16, 369, 441, 492, 1096, 1099, 1375
PleI GAGTC 2 cut(s) 28, 36
PmaCI CACGTG 1 cut(s) 940
PmlI CACGTG 1 cut(s) 940
PpsI GAGTC 2 cut(s) 28, 36
Ppu21I YACGTR 1 cut(s) 940
PscI ACATGT 1 cut(s) 530
PshAI GACNNNNGTC 1 cut(s) 38
PsiI TTATAA 1 cut(s) 374
Psp6I CCWGG 2 cut(s) 892, 1254
PspCI CACGTG 1 cut(s) 940
PspGI CCWGG 2 cut(s) 892, 1254
PspN4I GGNNCC 4 cut(s) 65, 762, 1209, 1351
PspPI GGNCC 4 cut(s) 63, 760, 985, 1207
PstI CTGCAG 1 cut(s) 1099
PstNI CAGNNNCTG 1 cut(s) 988
PsuI RGATCY 1 cut(s) 598
RsaI GTAC 2 cut(s) 50, 1369
RsaNI GTAC 2 cut(s) 49, 1368
RseI CAYNNNNRTG 2 cut(s) 225, 1399
SaqAI TTAA 7 cut(s) 135, 212, 462, 747, 996, 1029, 1134
SatI GCNGC 8 cut(s) 6, 15, 368, 440, 491, 1095, 1098, 1374
Sau3AI GATC 5 cut(s) 52, 174, 183, 598, 889
Sau96I GGNCC 4 cut(s) 63, 760, 985, 1207
SchI GAGTC 2 cut(s) 28, 37
ScrFI CCNGG 2 cut(s) 894, 1256
SduI GDGCHC 3 cut(s) 162, 483, 945
SfaNI GCATC 2 cut(s) 865, 1315
SfcI CTRYAG 1 cut(s) 1095
SinI GGWCC 2 cut(s) 63, 760
SmiMI CAYNNNNRTG 2 cut(s) 225, 1399
SmlI CTYRAG 2 cut(s) 161, 727
SmoI CTYRAG 2 cut(s) 161, 727
SsiI CCGC 6 cut(s) 5, 14, 17, 1234, 1353, 1374
SspI AATATT 1 cut(s) 882
SspMI CTAG 4 cut(s) 68, 255, 837, 1359
StyD4I CCNGG 2 cut(s) 892, 1254
StyI CCWWGG 3 cut(s) 67, 87, 716
TaaI ACNGT 1 cut(s) 392
TaiI ACGT 3 cut(s) 111, 942, 1060
TaqI TCGA 4 cut(s) 111, 505, 801, 864
TauI GCSGC 3 cut(s) 8, 17, 1376
TfiI GAWTC 6 cut(s) 139, 659, 753, 899, 991, 1044
Tru1I TTAA 7 cut(s) 135, 212, 462, 747, 996, 1029, 1134
Tru9I TTAA 7 cut(s) 135, 212, 462, 747, 996, 1029, 1134
TscAI CASTG 2 cut(s) 387, 490
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 5 cut(s) 367, 439, 490, 1094, 1097
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 221, 968
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 2 cut(s) 387, 490
VpaK11BI GGWCC 2 cut(s) 63, 760
XagI CCTNNNNNAGG 1 cut(s) 71
XapI RAATTY 5 cut(s) 95, 124, 433, 1259, 1343
XceI RCATGY 1 cut(s) 534
XmaJI CCTAGG 1 cut(s) 67
XspI CTAG 4 cut(s) 68, 255, 837, 1359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.