Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8519507.1

Orthogroup ID

OG0010760

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4978

Gene Structure 4978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8519507.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

atcaaacgagaaatatcaacgatgaagttaattagacatcccaatgtaatccgtatgtatgaggtgatggctagcaagacaaaaatatacatcgttttggagtttgtgactggtggagaactatttgacaaaattgcaagtaaaggaagattgaaagaagatgaagcaaggaagtattttcagcagcttataaatgcagtggattactgccatagcagaggtgttttccatagagacctgaagcccgagaatttgctgctggatgctaatggagtgcttaaagtttcagattttgggctcagtgcgctgcctcagcaagttcgagaagatggattacttcacacaacatgtgggacaccaaattatgttgcccctgaggtcatcaacaacaaagggtatgatggagcaaaggctgatctatggtcttgtggtgtgattctttatgtcttgatggctggctatctgccttttgaagattccaatctcatgtcattatataaaaagatattcaaggctgagttctcatgtcctccatggttctcctcaagtgcaaagaagctaattaagagaatcttggaccctaaccccttgacacgaattacaattgctgaggtgattgagaatgagtggttcaagaaagggtataaagcacctaattttgaacaagttgatgttagtctcgatgatgtggatgcgatattcaatgattcaggggatacccagaaccttgtagttgagaggcgagaggaaagacatgtgcctgttaccatgaatgcctttgagcttatctctacatctcagggcctgaatctcaatagtctttttgagaaacagatggaacttgttaaacgagaaacaagattcacatccaaacgtcctgctaatgagattatttctaaaattgaggaagctgcagcaccattgggttttggtgtgaagaaaaataattttaagttgaagcttcaaggtgaaaaaactggacgtaaaggtcatctatctgttgcaacagagatttttgaggtggccccttcactctacatggttgaagtccgcaagtcagggggagatactctggaatttcacaatttctacaagaacctttccacggggctgaaggatattgtctggaagtcgggagatgagtcaaggagggaagcagaacttggttctggttctggtactggtgctggggctggtgctggtgcaggtgcaggtgcaggtgcaggtgcggtgccatctacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0007154 GO:0007165 GO:0007584 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009536 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0010107 GO:0010118 GO:0015672 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0030001 GO:0031667 GO:0034220 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0071704 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

414

Amino Acids

45.9

Weight (kDa)

8.18

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30270 AT1G30270 AT1G30270
fragaria_vesca	FvH4_3g05110 FvH4_3g05110 FvH4_3g05110
malus_domestica	MD05G1280400.v1.1 MD10G1258700.v1.1
prunus_persica	Prupe.4G085000_v2.0.a1 Prupe.4G085000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014761
rosa_laevigata	RLG00000032138
rosa_multiflora	Rmu_co8519507.1_g000001 Rmu_sc0017371.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061780 Rroxscaffold_3G00222800
rosa_rugosa	Rorug05G0020500
rosa_samantha	Rh5AG116100 Rh5BG112900
rosa_wichuraiana	Rw5G010020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	191
AarI	CACCTGC	4 cut(s)	1196, 1202, 1208, 1214
AasI	GACNNNNNNGTC	1 cut(s)	987
Acc36I	ACCTGC	4 cut(s)	1196, 1202, 1208, 1214
AccB1I	GGYRCC	1 cut(s)	1231
AciI	CCGC	2 cut(s)	1051, 1229
AcsI	RAATTY	2 cut(s)	250, 1076
AcuI	CTGAAG	2 cut(s)	260, 1133
AfaI	GTAC	1 cut(s)	1180
AfiI	CCNNNNNNNGG	1 cut(s)	1105
AflIII	ACRYGT	2 cut(s)	347, 754
AgsI	TTSAA	9 cut(s)	154, 473, 511, 634, 662, 703, 958, 965, 1046
AjuI	GAANNNNNNNTTGG	2 cut(s)	1146, 1178
AluBI	AGCT	5 cut(s)	187, 559, 784, 911, 961
AluI	AGCT	5 cut(s)	187, 559, 784, 911, 961
Alw26I	GTCTC	2 cut(s)	228, 683
AlwNI	CAGNNNCTG	1 cut(s)	805
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	2 cut(s)	802, 1023
ApeKI	GCWGC	5 cut(s)	184, 256, 307, 911, 914
ApoI	RAATTY	2 cut(s)	250, 1076
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	3 cut(s)	577, 802, 1024
AsuHPI	GGTGA	3 cut(s)	76, 625, 980
AsuNHI	GCTAGC	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	577
AxyI	CCTNAGG	1 cut(s)	375
BanI	GGYRCC	1 cut(s)	1231
BanII	GRGCYC	1 cut(s)	300
BarI	GAAGNNNNNNTAC	2 cut(s)	318, 350
BbvCI	CCTCAGC	2 cut(s)	312, 609
BbvI	GCAGC	5 cut(s)	196, 243, 294, 898, 926
BccI	CCATC	6 cut(s)	61, 323, 395, 445, 829, 1243
BciVI	GTATCC	1 cut(s)	709
BcoDI	GTCTC	2 cut(s)	228, 683
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	912
BfuAI	ACCTGC	4 cut(s)	1196, 1202, 1208, 1214
BfuI	GTATCC	1 cut(s)	709
BisI	GCNGC	5 cut(s)	185, 257, 308, 912, 915
BlsI	GCNGC	5 cut(s)	186, 258, 309, 913, 916
Bme18I	GGWCC	1 cut(s)	577
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	3 cut(s)	577, 802, 1024
BmiI	GGNNCC	3 cut(s)	579, 1026, 1233
BmsI	GCATC	2 cut(s)	253, 682
BmtI	GCTAGC	1 cut(s)	75
BplI	GAGNNNNNCTC	2 cut(s)	773, 805
Bpu10I	CCTNAGC	2 cut(s)	312, 609
BpuEI	CTTGAG	1 cut(s)	529
BsaBI	GATNNNNATC	2 cut(s)	480, 865
BsaI	GGTCTC	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	533, 1104
Bsc4I	CCNNNNNNNGG	1 cut(s)	1105
Bse1I	ACTGG	3 cut(s)	115, 982, 1186
Bse21I	CCTNAGG	1 cut(s)	375
Bse8I	GATNNNNATC	2 cut(s)	480, 865
BseDI	CCNNGG	2 cut(s)	533, 1104
BseGI	GGATG	4 cut(s)	37, 268, 697, 866
BseJI	GATNNNNATC	2 cut(s)	480, 865
BseLI	CCNNNNNNNGG	1 cut(s)	1105
BseMII	CTCAG	6 cut(s)	313, 326, 366, 507, 600, 812
BseNI	ACTGG	3 cut(s)	115, 982, 1186
BseRI	GAGGAG	1 cut(s)	532
BseXI	GCAGC	5 cut(s)	196, 243, 294, 898, 926
BseYI	CCCAGC	1 cut(s)	1187
BsgI	GTGCAG	4 cut(s)	1224, 1230, 1236, 1242
BshFI	GGCC	2 cut(s)	804, 1025
BshNI	GGYRCC	1 cut(s)	1231
BsiHKCI	CYCGRG	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	1 cut(s)	1105
BsmAI	GTCTC	2 cut(s)	228, 683
BsmFI	GGGAC	1 cut(s)	367
BsmI	GAATGC	1 cut(s)	778
BsnI	GGCC	2 cut(s)	804, 1025
Bso31I	GGTCTC	1 cut(s)	228
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	1 cut(s)	415
Bsp19I	CCATGG	1 cut(s)	533
BspACI	CCGC	2 cut(s)	1051, 1229
BspANI	GGCC	2 cut(s)	804, 1025
BspCNI	CTCAG	6 cut(s)	312, 325, 367, 508, 601, 811
BspLI	GGNNCC	3 cut(s)	579, 1026, 1233
BspMAI	CTGCAG	1 cut(s)	916
BspMI	ACCTGC	4 cut(s)	1196, 1202, 1208, 1214
BspOI	GCTAGC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	1231
BspTNI	GGTCTC	1 cut(s)	228
BsrI	ACTGG	3 cut(s)	115, 982, 1186
BssECI	CCNNGG	2 cut(s)	533, 1104
BssMI	GATC	1 cut(s)	415
BssT1I	CCWWGG	1 cut(s)	533
BstC8I	GCNNGC	2 cut(s)	73, 457
BstDEI	CTNAG	6 cut(s)	299, 312, 375, 516, 609, 798
BstDSI	CCRYGG	2 cut(s)	533, 1104
BstF5I	GGATG	4 cut(s)	37, 268, 697, 866
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	1 cut(s)	418
BstMAI	GTCTC	2 cut(s)	228, 683
BstMBI	GATC	1 cut(s)	415
BstMWI	GCNNNNNNNGC	2 cut(s)	304, 313
BstNSI	RCATGY	2 cut(s)	351, 758
BstSFI	CTRYAG	1 cut(s)	912
BstV1I	GCAGC	5 cut(s)	196, 243, 294, 898, 926
Bsu36I	CCTNAGG	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	709
BsuRI	GGCC	2 cut(s)	804, 1025
BtgI	CCRYGG	2 cut(s)	533, 1104
BtsCI	GGATG	4 cut(s)	37, 268, 697, 866
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	204, 307
BveI	ACCTGC	4 cut(s)	1196, 1202, 1208, 1214
Cac8I	GCNNGC	2 cut(s)	73, 457
CaiI	CAGNNNCTG	1 cut(s)	805
CfoI	GCGC	1 cut(s)	307
Cfr13I	GGNCC	3 cut(s)	577, 802, 1024
Csp6I	GTAC	1 cut(s)	1179
CviAII	CATG	8 cut(s)	348, 487, 525, 534, 755, 769, 1039, 1242
CviQI	GTAC	1 cut(s)	1179
DdeI	CTNAG	6 cut(s)	299, 312, 375, 516, 609, 798
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
DrdI	GACNNNNNNGTC	1 cut(s)	987
DseDI	GACNNNNNNGTC	1 cut(s)	987
Eco130I	CCWWGG	1 cut(s)	533
Eco24I	GRGCYC	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	577
Eco57I	CTGAAG	2 cut(s)	260, 1133
Eco81I	CCTNAGG	1 cut(s)	375
Eco88I	CYCGRG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	802
EcoT14I	CCWWGG	1 cut(s)	533
EcoT38I	GRGCYC	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	533
FaeI	CATG	8 cut(s)	351, 490, 528, 537, 758, 772, 1042, 1245
FalI	AAGNNNNNCTT	4 cut(s)	557, 589, 1146, 1178
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	8 cut(s)	347, 486, 524, 533, 754, 768, 1038, 1241
Fnu4HI	GCNGC	5 cut(s)	185, 257, 308, 912, 915
FokI	GGATG	4 cut(s)	24, 275, 704, 853
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	5 cut(s)	185, 257, 308, 912, 915
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	5 cut(s)	185, 257, 308, 912, 915
GsaI	CCCAGC	1 cut(s)	1191
HaeIII	GGCC	2 cut(s)	804, 1025
HhaI	GCGC	1 cut(s)	307
Hin1II	CATG	8 cut(s)	351, 490, 528, 537, 758, 772, 1042, 1245
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HindIII	AAGCTT	1 cut(s)	959
HinfI	GANTC	7 cut(s)	436, 476, 570, 707, 808, 861, 1142
HphI	GGTGA	3 cut(s)	76, 625, 980
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	7 cut(s)	323, 448, 634, 680, 1073, 1126, 1134
HpyAV	CCTTC	2 cut(s)	1038, 1108
HpyCH4IV	ACGT	2 cut(s)	874, 982
HpyCH4V	TGCA	9 cut(s)	137, 197, 551, 914, 1004, 1205, 1211, 1217, 1223
HpyF10VI	GCNNNNNNNGC	2 cut(s)	304, 313
HpyF3I	CTNAG	6 cut(s)	299, 312, 375, 516, 609, 798
HpySE526I	ACGT	2 cut(s)	874, 982
Hsp92II	CATG	8 cut(s)	351, 490, 528, 537, 758, 772, 1042, 1245
HspAI	GCGC	1 cut(s)	305
Kzo9I	GATC	1 cut(s)	415
LmnI	GCTCC	1 cut(s)	404
Lsp1109I	GCAGC	5 cut(s)	196, 243, 294, 898, 926
LweI	GCATC	2 cut(s)	253, 682
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	2 cut(s)	874, 982
MaeIII	GTNAC	2 cut(s)	106, 763
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	5 cut(s)	159, 170, 338, 485, 949
MfeI	CAATTG	1 cut(s)	603
MhlI	GDGCHC	1 cut(s)	300
MlyI	GAGTC	1 cut(s)	1151
MseI	TTAA	5 cut(s)	29, 279, 564, 846, 951
MslI	CAYNNNNRTG	2 cut(s)	42, 1240
MunI	CAATTG	1 cut(s)	603
Mva1269I	GAATGC	1 cut(s)	778
MwoI	GCNNNNNNNGC	2 cut(s)	304, 313
NcoI	CCATGG	1 cut(s)	533
NdeII	GATC	1 cut(s)	415
NheI	GCTAGC	1 cut(s)	71
NlaIII	CATG	8 cut(s)	351, 490, 528, 537, 758, 772, 1042, 1245
NlaIV	GGNNCC	3 cut(s)	579, 1026, 1233
NmuCI	GTSAC	1 cut(s)	106
NspI	RCATGY	2 cut(s)	351, 758
PaqCI	CACCTGC	4 cut(s)	1196, 1202, 1208, 1214
PciI	ACATGT	2 cut(s)	347, 754
PctI	GAATGC	1 cut(s)	778
PfeI	GAWTC	6 cut(s)	436, 476, 570, 707, 808, 861
PkrI	GCNGC	5 cut(s)	186, 258, 309, 913, 916
PleI	GAGTC	1 cut(s)	1150
PpsI	GAGTC	1 cut(s)	1150
PscI	ACATGT	2 cut(s)	347, 754
PsiI	TTATAA	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	1187
PspN4I	GGNNCC	3 cut(s)	579, 1026, 1233
PspPI	GGNCC	3 cut(s)	577, 802, 1024
PstI	CTGCAG	1 cut(s)	916
PstNI	CAGNNNCTG	1 cut(s)	805
RsaI	GTAC	1 cut(s)	1180
RsaNI	GTAC	1 cut(s)	1179
RseI	CAYNNNNRTG	2 cut(s)	42, 1240
SaqAI	TTAA	5 cut(s)	29, 279, 564, 846, 951
SatI	GCNGC	5 cut(s)	185, 257, 308, 912, 915
Sau3AI	GATC	1 cut(s)	415
Sau96I	GGNCC	3 cut(s)	577, 802, 1024
SchI	GAGTC	1 cut(s)	1151
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	2 cut(s)	253, 682
SfcI	CTRYAG	1 cut(s)	912
SinI	GGWCC	1 cut(s)	577
SmiMI	CAYNNNNRTG	2 cut(s)	42, 1240
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
SsiI	CCGC	2 cut(s)	1051, 1229
SspMI	CTAG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	533
TaiI	ACGT	2 cut(s)	877, 985
TaqI	TCGA	2 cut(s)	322, 681
TfiI	GAWTC	6 cut(s)	436, 476, 570, 707, 808, 861
Tru1I	TTAA	5 cut(s)	29, 279, 564, 846, 951
Tru9I	TTAA	5 cut(s)	29, 279, 564, 846, 951
TscAI	CASTG	2 cut(s)	204, 307
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	5 cut(s)	184, 256, 307, 911, 914
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	3 cut(s)	38, 177, 785
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	2 cut(s)	204, 307
VpaK11BI	GGWCC	1 cut(s)	577
XapI	RAATTY	2 cut(s)	250, 1076
XceI	RCATGY	2 cut(s)	351, 758
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.