Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003689

Physical Location & Seq

Genomic Coordinates Reverse (-)

1346014 .. 1347746

Gene Structure 1733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0020500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTTGATTCCCAATTGGGCCACGCCAATCTCACTACCACTAGTCCATTTCCTTCCCCAGGAAAAGAGAGACATGGCGGATCTGTTCATCAAACAATCAAAGCAGTACGCTATGGCTCGGCCAGGTTACCCAGAAAAGCTGTTTCAGTTCATTGCTTCCAAGGCTGCCGCCCTCGACCTTGCATGGGACGTCGGCACCGGTAGCGGCCAGGCTGCCCGATCCCTATCTGAGATCTTCAAGAATGTGGTGGCCACAGACACAAGCCAAAAGCAACTTGATTGCGCTCCAAAACTCCCCAATGTTCGCTATGAGCACACTCCTCCAGTCCTGACCATACCCGAAATTGAACAAAAATTGGCCCCAAAATCAAGTGTTGATTTAGTGACCGTTGCACAAGCCCTCCATTGGTTTGACCTCCCAAGTTTCTACGAACAAATGAAATGGGTGCTGAAGAAACCCAATGGGGTCATTGCTGCATGGTGCTACACTGTGCCTAGAGTTAACAACAATGTAGACACCGTCTTCGATCGATTCTATTCCATTGATGTCGAACCCTACTGGGATCGGGCGCGTAAATTAGTGGACAAGAAGTACAGCACTATTGATTTTCCGTTTGAGCCGGTTAGCGGAGAAGGCAATACAGGACCATTCGAGTTTGCTTCGGAGAGATTGATGGGTTTGGATGATTTTTTCACGTACATACGGTCGTGGTCAGCTTATCAGACGGCTAAGGAAAAGGGTGTTGACCTTCTGAGTGATGAGGTGATGGAGGCATTTAAGCAAGCTTGGAATGCTGATGGCGGAGATGGACAGAAGGCTGTGAACTATCCTATCAATTTAAGAATCGGAAGAGTGGGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0007154 GO:0007165 GO:0007584 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009536 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0010107 GO:0010118 GO:0015672 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0030001 GO:0031667 GO:0034220 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0071704 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

287

Amino Acids

32.47

Weight (kDa)

5.74

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_11	PF08241	63 - 157	3.2e-10	Methyltransferase domain
Methyltransf_12	PF08242	63 - 156	4.4e-08	Methyltransferase domain
Methyltransf_25	PF13649	63 - 152	2.6e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05120
rosa_chinensis	RchiOBHm_Chr1g0324611 RchiOBHm_Chr5g0014651 RchiOBHm_Chr5g0014741
rosa_laevigata	RLG00000030187 RLG00000032136 RLG00000032137
rosa_multiflora	Rmu_sc0003893.1_g000002 Rmu_sc0003893.1_g000003 Rmu_sc0003893.1_g000007 Rmu_sc0013610.1_g000012
rosa_roxburghii	Rroxscaffold_159G00432980 Rroxscaffold_159G00432990 Rroxscaffold_1G00061790 Rroxscaffold_4G00325310 Rroxscaffold_4G00325330
rosa_rugosa	Rorug01G0047100.1 Rorug01G0047300 Rorug05G0020400 Rorug05G0020500
rosa_samantha	Rh1AG062700 Rh1AG062900 Rh1BG053100 Rh1CG064800 Rh1DG068900 Rh1DG069800 Rh5AG115900 Rh5BG112300 Rh5BG112800 Rh5CG124400 Rh7BG358300
rosa_wichuraiana	Rw1G005330 Rw5G009990 Rw5G010000 Rw5G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	192
AccB1I	GGYRCC	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	513
AccII	CGCG	1 cut(s)	571
AciI	CCGC	5 cut(s)	77, 168, 204, 627, 801
AclWI	GGATC	3 cut(s)	87, 213, 570
AcoI	YGGCCR	3 cut(s)	119, 205, 249
AcuI	CTGAAG	1 cut(s)	470
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	3 cut(s)	107, 593, 698
AfiI	CCNNNNNNNGG	4 cut(s)	58, 184, 405, 626
AgeI	ACCGGT	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	238, 347
AhlI	ACTAGT	1 cut(s)	40
AjnI	CCWGG	3 cut(s)	57, 121, 207
AluBI	AGCT	3 cut(s)	139, 716, 785
AluI	AGCT	3 cut(s)	139, 716, 785
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	3 cut(s)	87, 213, 570
AoxI	GGCC	5 cut(s)	18, 119, 205, 249, 357
ApeKI	GCWGC	3 cut(s)	164, 212, 473
ArsI	GACNNNNNNTTYG	2 cut(s)	506, 538
AsiGI	ACCGGT	1 cut(s)	197
AspLEI	GCGC	2 cut(s)	284, 571
AspS9I	GGNCC	3 cut(s)	18, 358, 644
AsuHPI	GGTGA	1 cut(s)	775
AvaII	GGWCC	1 cut(s)	644
BalI	TGGCCA	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	514
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	3 cut(s)	151, 199, 460
BccI	CCATC	4 cut(s)	667, 760, 791, 800
BceAI	ACGGC	1 cut(s)	741
BciT130I	CCWGG	3 cut(s)	59, 123, 209
BcoDI	GTCTC	1 cut(s)	63
BcuI	ACTAGT	1 cut(s)	40
BfaI	CTAG	2 cut(s)	41, 495
BglII	AGATCT	1 cut(s)	231
BisI	GCNGC	5 cut(s)	165, 168, 205, 213, 474
BlsI	GCNGC	5 cut(s)	166, 169, 206, 214, 475
Bme1390I	CCNGG	3 cut(s)	59, 123, 209
Bme18I	GGWCC	1 cut(s)	644
BmgT120I	GGNCC	3 cut(s)	18, 358, 644
BmiI	GGNNCC	2 cut(s)	196, 360
BmrFI	CCNGG	3 cut(s)	59, 123, 209
BmrI	ACTGGG	1 cut(s)	568
BmuI	ACTGGG	1 cut(s)	568
BpiI	GAAGAC	1 cut(s)	514
BpmI	CTGGAG	1 cut(s)	306
Bpu10I	CCTNAGC	1 cut(s)	729
Bsa29I	ATCGAT	1 cut(s)	529
BsaAI	YACGTR	1 cut(s)	696
BsaBI	GATNNNNATC	1 cut(s)	223
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	57, 159
BsaWI	WCCGGW	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 184, 405, 626
Bse118I	RCCGGY	2 cut(s)	197, 619
Bse1I	ACTGG	2 cut(s)	323, 563
Bse3DI	GCAATG	2 cut(s)	150, 468
Bse8I	GATNNNNATC	1 cut(s)	223
BseBI	CCWGG	3 cut(s)	59, 123, 209
BseCI	ATCGAT	1 cut(s)	529
BseDI	CCNNGG	2 cut(s)	57, 159
BseGI	GGATG	1 cut(s)	688
BseJI	GATNNNNATC	1 cut(s)	223
BseLI	CCNNNNNNNGG	4 cut(s)	58, 184, 405, 626
BseMI	GCAATG	2 cut(s)	150, 468
BseMII	CTCAG	2 cut(s)	219, 743
BseNI	ACTGG	2 cut(s)	323, 563
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	3 cut(s)	151, 199, 460
Bsh1236I	CGCG	1 cut(s)	571
Bsh1285I	CGRYCG	2 cut(s)	529, 707
BshFI	GGCC	5 cut(s)	20, 121, 207, 251, 359
BshNI	GGYRCC	1 cut(s)	194
BshTI	ACCGGT	1 cut(s)	197
BshVI	ATCGAT	1 cut(s)	529
BsiEI	CGRYCG	2 cut(s)	529, 707
BsiHKAI	GWGCWC	1 cut(s)	315
BsiSI	CCGG	2 cut(s)	198, 620
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	4 cut(s)	58, 184, 405, 626
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	796
BsnI	GGCC	5 cut(s)	20, 121, 207, 251, 359
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	5 cut(s)	79, 218, 231, 526, 562
BspACI	CCGC	5 cut(s)	77, 168, 204, 627, 801
BspANI	GGCC	5 cut(s)	20, 121, 207, 251, 359
BspCNI	CTCAG	2 cut(s)	220, 744
BspDI	ATCGAT	1 cut(s)	529
BspFNI	CGCG	1 cut(s)	571
BspLI	GGNNCC	2 cut(s)	196, 360
BspPI	GGATC	3 cut(s)	87, 213, 570
BspT107I	GGYRCC	1 cut(s)	194
BsrDI	GCAATG	2 cut(s)	150, 468
BsrFI	RCCGGY	2 cut(s)	197, 619
BsrI	ACTGG	2 cut(s)	323, 563
BssAI	RCCGGY	2 cut(s)	197, 619
BssECI	CCNNGG	2 cut(s)	57, 159
BssMI	GATC	5 cut(s)	79, 218, 231, 526, 562
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	3 cut(s)	59, 123, 209
Bst4CI	ACNGT	4 cut(s)	388, 490, 520, 705
Bst6I	CTCTTC	1 cut(s)	844
BstACI	GRCGYC	1 cut(s)	189
BstBAI	YACGTR	1 cut(s)	696
BstC8I	GCNNGC	1 cut(s)	783
BstDEI	CTNAG	3 cut(s)	228, 729, 752
BstEII	GGTNACC	1 cut(s)	125
BstENI	CCTNNNNNAGG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	688
BstFNI	CGCG	1 cut(s)	571
BstHHI	GCGC	2 cut(s)	284, 571
BstKTI	GATC	5 cut(s)	82, 221, 234, 529, 565
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	5 cut(s)	79, 218, 231, 526, 562
BstMCI	CGRYCG	2 cut(s)	529, 707
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 201, 633, 791
BstNI	CCWGG	3 cut(s)	59, 123, 209
BstPI	GGTNACC	1 cut(s)	125
BstSCI	CCNGG	3 cut(s)	57, 121, 207
BstUI	CGCG	1 cut(s)	571
BstV1I	GCAGC	3 cut(s)	151, 199, 460
BstV2I	GAAGAC	1 cut(s)	514
BstX2I	RGATCY	2 cut(s)	79, 231
BstYI	RGATCY	2 cut(s)	79, 231
Bsu15I	ATCGAT	1 cut(s)	529
BsuRI	GGCC	5 cut(s)	20, 121, 207, 251, 359
BsuTUI	ATCGAT	1 cut(s)	529
BtsCI	GGATG	1 cut(s)	688
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	783
CfoI	GCGC	2 cut(s)	284, 571
Cfr10I	RCCGGY	2 cut(s)	197, 619
Cfr13I	GGNCC	3 cut(s)	18, 358, 644
ClaI	ATCGAT	1 cut(s)	529
Csp6I	GTAC	3 cut(s)	106, 592, 697
CspAI	ACCGGT	1 cut(s)	197
CviAII	CATG	3 cut(s)	73, 183, 477
CviQI	GTAC	3 cut(s)	106, 592, 697
DdeI	CTNAG	3 cut(s)	228, 729, 752
DpnI	GATC	5 cut(s)	81, 220, 233, 528, 564
DpnII	GATC	5 cut(s)	79, 218, 231, 526, 562
EaeI	YGGCCR	3 cut(s)	119, 205, 249
Eam1104I	CTCTTC	1 cut(s)	844
EarI	CTCTTC	1 cut(s)	844
EciI	GGCGGA	2 cut(s)	92, 816
Eco130I	CCWWGG	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	644
Eco57I	CTGAAG	1 cut(s)	470
Eco91I	GGTNACC	1 cut(s)	125
EcoNI	CCTNNNNNAGG	1 cut(s)	56
EcoO65I	GGTNACC	1 cut(s)	125
EcoRII	CCWGG	3 cut(s)	57, 121, 207
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	3 cut(s)	76, 186, 480
FaiI	YATR	7 cut(s)	74, 113, 184, 309, 335, 478, 701
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	3 cut(s)	72, 182, 476
FblI	GTMKAC	1 cut(s)	513
Fnu4HI	GCNGC	5 cut(s)	165, 168, 205, 213, 474
FokI	GGATG	1 cut(s)	695
Fsp4HI	GCNGC	5 cut(s)	165, 168, 205, 213, 474
FspBI	CTAG	2 cut(s)	41, 495
GlaI	GCGC	2 cut(s)	283, 570
GluI	GCNGC	5 cut(s)	165, 168, 205, 213, 474
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	5 cut(s)	20, 121, 207, 251, 359
HapII	CCGG	2 cut(s)	198, 620
HhaI	GCGC	2 cut(s)	284, 571
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	3 cut(s)	76, 186, 480
Hin6I	GCGC	2 cut(s)	282, 569
HinP1I	GCGC	2 cut(s)	282, 569
HincII	GTYRAC	2 cut(s)	502, 745
HindII	GTYRAC	2 cut(s)	502, 745
HindIII	AAGCTT	1 cut(s)	783
HinfI	GANTC	3 cut(s)	7, 531, 843
HpaI	GTTAAC	1 cut(s)	502
HpaII	CCGG	2 cut(s)	198, 620
HphI	GGTGA	1 cut(s)	775
Hpy166II	GTNNAC	5 cut(s)	502, 514, 583, 745, 823
Hpy188I	TCNGA	5 cut(s)	229, 664, 723, 753, 848
Hpy188III	TCNNGA	2 cut(s)	238, 328
Hpy8I	GTNNAC	5 cut(s)	502, 514, 583, 745, 823
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	4 cut(s)	62, 626, 758, 808
HpyCH4III	ACNGT	4 cut(s)	388, 490, 520, 705
HpyCH4IV	ACGT	2 cut(s)	189, 695
HpyCH4V	TGCA	3 cut(s)	182, 392, 476
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 201, 633, 791
HpyF3I	CTNAG	3 cut(s)	228, 729, 752
HpySE526I	ACGT	2 cut(s)	189, 695
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	3 cut(s)	76, 186, 480
HspAI	GCGC	2 cut(s)	282, 569
KspAI	GTTAAC	1 cut(s)	502
Kzo9I	GATC	5 cut(s)	79, 218, 231, 526, 562
LmnI	GCTCC	1 cut(s)	289
Lsp1109I	GCAGC	3 cut(s)	151, 199, 460
MaeI	CTAG	2 cut(s)	41, 495
MaeII	ACGT	2 cut(s)	189, 695
MaeIII	GTNAC	2 cut(s)	125, 382
MalI	GATC	5 cut(s)	81, 220, 233, 528, 564
MboI	GATC	5 cut(s)	79, 218, 231, 526, 562
MboII	GAAGA	4 cut(s)	226, 463, 514, 861
MfeI	CAATTG	1 cut(s)	13
MflI	RGATCY	2 cut(s)	79, 231
MhlI	GDGCHC	1 cut(s)	315
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	6 cut(s)	13, 342, 353, 575, 835, 859
MluNI	TGGCCA	1 cut(s)	251
MnlI	CCTC	6 cut(s)	182, 330, 410, 425, 754, 763
Mox20I	TGGCCA	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	3 cut(s)	501, 777, 839
Msp20I	TGGCCA	1 cut(s)	251
MspI	CCGG	2 cut(s)	198, 620
MspR9I	CCNGG	3 cut(s)	59, 123, 209
MunI	CAATTG	1 cut(s)	13
Mva1269I	GAATGC	1 cut(s)	796
MvaI	CCWGG	3 cut(s)	59, 123, 209
MvnI	CGCG	1 cut(s)	571
MwoI	GCNNNNNNNGC	4 cut(s)	161, 201, 633, 791
NdeII	GATC	5 cut(s)	79, 218, 231, 526, 562
NlaIII	CATG	3 cut(s)	76, 186, 480
NlaIV	GGNNCC	2 cut(s)	196, 360
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	382
PctI	GAATGC	1 cut(s)	796
PfeI	GAWTC	3 cut(s)	7, 531, 843
PflFI	GACNNNGTC	1 cut(s)	518
PinAI	ACCGGT	1 cut(s)	197
PkrI	GCNGC	5 cut(s)	166, 169, 206, 214, 475
Ple19I	CGATCG	1 cut(s)	529
Ppu21I	YACGTR	1 cut(s)	696
Psp6I	CCWGG	3 cut(s)	57, 121, 207
PspEI	GGTNACC	1 cut(s)	125
PspGI	CCWGG	3 cut(s)	57, 121, 207
PspN4I	GGNNCC	2 cut(s)	196, 360
PspPI	GGNCC	3 cut(s)	18, 358, 644
PsuI	RGATCY	2 cut(s)	79, 231
PsyI	GACNNNGTC	1 cut(s)	518
PvuI	CGATCG	1 cut(s)	529
RsaI	GTAC	3 cut(s)	107, 593, 698
RsaNI	GTAC	3 cut(s)	106, 592, 697
SaqAI	TTAA	3 cut(s)	501, 777, 839
SatI	GCNGC	5 cut(s)	165, 168, 205, 213, 474
Sau3AI	GATC	5 cut(s)	79, 218, 231, 526, 562
Sau96I	GGNCC	3 cut(s)	18, 358, 644
ScrFI	CCNGG	3 cut(s)	59, 123, 209
SduI	GDGCHC	1 cut(s)	315
SinI	GGWCC	1 cut(s)	644
SpeI	ACTAGT	1 cut(s)	40
Sse9I	AATT	6 cut(s)	13, 342, 353, 575, 835, 859
SsiI	CCGC	5 cut(s)	77, 168, 204, 627, 801
SspMI	CTAG	2 cut(s)	41, 495
StyD4I	CCNGG	3 cut(s)	57, 121, 207
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	4 cut(s)	388, 490, 520, 705
TaiI	ACGT	2 cut(s)	192, 698
TaqI	TCGA	5 cut(s)	174, 525, 529, 549, 651
TasI	AATT	6 cut(s)	13, 342, 353, 575, 835, 859
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	2 cut(s)	170, 207
TfiI	GAWTC	3 cut(s)	7, 531, 843
Tru1I	TTAA	3 cut(s)	501, 777, 839
Tru9I	TTAA	3 cut(s)	501, 777, 839
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	3 cut(s)	164, 212, 473
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	3 cut(s)	76, 139, 452
TspGWI	ACGGA	1 cut(s)	600
TspRI	CASTG	1 cut(s)	493
Tth111I	GACNNNGTC	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	644
XagI	CCTNNNNNAGG	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	513
XspI	CTAG	2 cut(s)	41, 495
ZraI	GACGTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.