Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003893.1

Orthogroup ID

OG0003689

Physical Location & Seq

Genomic Coordinates Forward (+)

14912 .. 16778

Gene Structure 1867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003893.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggacaagaagttaagggatgtagttcttgcattgcgatcacttacagatctcgctttcgcactccatactgatgctcagattcgtgatctgactgacgtgccctccgaccccttcgactttgagtatgaggatatcgtgtatcggggtttaaagtggatatctctagatatcataatcgaggtccttcctattcttcccatccaacaggtcatactagtagctatatttttcagaatgaatgattctggatatctaaatgaagcagcaactggcaacgtttttcttactttgcaattaattgcaaggggttgccaaatctaccacttctggaagccatttaaaagggttggaaaatgggccataagtgcattctttatcctcatgtacatcttggttggccatgtaagtttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

138

Amino Acids

15.9

Weight (kDa)

5.84

Isoelectric Point (pI)

30.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05120
rosa_chinensis	RchiOBHm_Chr1g0324611 RchiOBHm_Chr5g0014651 RchiOBHm_Chr5g0014741
rosa_laevigata	RLG00000030187 RLG00000032136 RLG00000032137
rosa_multiflora	Rmu_sc0003893.1_g000002 Rmu_sc0003893.1_g000003 Rmu_sc0003893.1_g000007 Rmu_sc0013610.1_g000012
rosa_roxburghii	Rroxscaffold_159G00432980 Rroxscaffold_159G00432990 Rroxscaffold_1G00061790 Rroxscaffold_4G00325310 Rroxscaffold_4G00325330
rosa_rugosa	Rorug01G0047100.1 Rorug01G0047300 Rorug05G0020400 Rorug05G0020500
rosa_samantha	Rh1AG062700 Rh1AG062900 Rh1BG053100 Rh1CG064800 Rh1DG068900 Rh1DG069800 Rh5AG115900 Rh5BG112300 Rh5BG112800 Rh5CG124400 Rh7BG358300
rosa_wichuraiana	Rw1G005330 Rw5G009990 Rw5G010000 Rw5G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	400
AfaI	GTAC	1 cut(s)	389
AhlI	ACTAGT	1 cut(s)	217
AjiI	CACGTC	1 cut(s)	100
AluBI	AGCT	1 cut(s)	224
AluI	AGCT	1 cut(s)	224
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	360, 400
ApeKI	GCWGC	1 cut(s)	266
AseI	ATTAAT	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	184, 360
AvaII	GGWCC	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	1 cut(s)	209
BcuI	ACTAGT	1 cut(s)	217
BfaI	CTAG	2 cut(s)	167, 218
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	184
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	184, 360
BmsI	GCATC	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	32
BseGI	GGATG	2 cut(s)	25, 201
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	277
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	278
BshFI	GGCC	2 cut(s)	362, 402
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	2 cut(s)	362, 402
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	387
Bsp143I	GATC	3 cut(s)	38, 49, 88
BspANI	GGCC	2 cut(s)	362, 402
BspCNI	CTCAG	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	32
BsrGI	TGTACA	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	277
BssMI	GATC	3 cut(s)	38, 49, 88
BstAUI	TGTACA	1 cut(s)	387
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	2 cut(s)	25, 201
BstKTI	GATC	3 cut(s)	41, 52, 91
BstMBI	GATC	3 cut(s)	38, 49, 88
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstSLI	GKGCMC	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	362, 402
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	25, 201
CaiI	CAGNNNCTG	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	184, 360
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	2 cut(s)	385, 404
CviJI	RGCY	4 cut(s)	224, 337, 362, 402
CviKI_1	RGCY	4 cut(s)	224, 337, 362, 402
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	3 cut(s)	40, 51, 90
DpnII	GATC	3 cut(s)	38, 49, 88
DraI	TTTAAA	2 cut(s)	153, 343
EaeI	YGGCCR	1 cut(s)	400
Eco32I	GATATC	4 cut(s)	136, 162, 172, 254
Eco47I	GGWCC	1 cut(s)	184
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRV	GATATC	4 cut(s)	136, 162, 172, 254
FaeI	CATG	2 cut(s)	388, 407
FaiI	YATR	9 cut(s)	69, 129, 176, 215, 227, 365, 386, 405, 415
FatI	CATG	2 cut(s)	384, 403
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	2 cut(s)	32, 188
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	2 cut(s)	167, 218
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	362, 402
Hin1II	CATG	2 cut(s)	388, 407
HinfI	GANTC	2 cut(s)	82, 245
Hpy188I	TCNGA	4 cut(s)	81, 93, 109, 236
Hpy188III	TCNNGA	4 cut(s)	86, 167, 249, 331
HpyAV	CCTTC	2 cut(s)	124, 197
HpyCH4IV	ACGT	2 cut(s)	99, 279
HpyCH4V	TGCA	4 cut(s)	32, 295, 305, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	2 cut(s)	99, 279
Hsp92II	CATG	2 cut(s)	388, 407
Kzo9I	GATC	3 cut(s)	38, 49, 88
LpnPI	CCDG	4 cut(s)	194, 234, 258, 316
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	2 cut(s)	167, 218
MaeII	ACGT	2 cut(s)	99, 279
MalI	GATC	3 cut(s)	40, 51, 90
MboI	GATC	3 cut(s)	38, 49, 88
MboII	GAAGA	1 cut(s)	188
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	2 cut(s)	296, 300
MluNI	TGGCCA	1 cut(s)	402
MmeI	TCCRAC	3 cut(s)	132, 229, 331
MnlI	CCTC	4 cut(s)	115, 124, 175, 392
Mox20I	TGGCCA	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	4 cut(s)	14, 152, 299, 342
MslI	CAYNNNNRTG	1 cut(s)	72
Msp20I	TGGCCA	1 cut(s)	402
Mva1269I	GAATGC	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	368
NdeII	GATC	3 cut(s)	38, 49, 88
NlaIII	CATG	2 cut(s)	388, 407
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PctI	GAATGC	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	82, 245
PkrI	GCNGC	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	184
PshBI	ATTAAT	1 cut(s)	299
Psp1406I	AACGTT	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	184
PspPI	GGNCC	2 cut(s)	184, 360
PspPPI	RGGWCCY	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	4 cut(s)	14, 152, 299, 342
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	3 cut(s)	38, 49, 88
Sau96I	GGNCC	2 cut(s)	184, 360
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	5 cut(s)	102, 186, 213, 226, 282
SfaNI	GCATC	1 cut(s)	64
SinI	GGWCC	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	72
SpeI	ACTAGT	1 cut(s)	217
Sse9I	AATT	2 cut(s)	296, 300
SspMI	CTAG	2 cut(s)	167, 218
TaiI	ACGT	2 cut(s)	102, 282
TaqI	TCGA	2 cut(s)	117, 180
TasI	AATT	2 cut(s)	296, 300
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	2 cut(s)	82, 245
Tru1I	TTAA	4 cut(s)	14, 152, 299, 342
Tru9I	TTAA	4 cut(s)	14, 152, 299, 342
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	2 cut(s)	254, 276
VpaK11BI	GGWCC	1 cut(s)	184
VspI	ATTAAT	1 cut(s)	299
XbaI	TCTAGA	1 cut(s)	166
XspI	CTAG	2 cut(s)	167, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.