Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003689

Physical Location & Seq

Genomic Coordinates Forward (+)

10990205 .. 10993384

Gene Structure 3180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G010000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGTCTATGGACTCTGGTAAAAGCGTCATCTTAAGCTTTCCATCACAAACAAGTTCCAGCTTAAACAGTACGTCTGGGCAACGTTCACGTATTCCAACTGCAATTAGGAAATCATGGTCCACACTGACAACTTCAGTTAAGAAAGCTTGGTTAGCAGTTACATTTCCACTTAGAGAAATATGGTCACCATTGGCATGTCATGTTGGAGGGATAGTTGGCGTGAGAACGATTGAGGATTTCAGAGAACTTTTTCAAGATTTGATGCCATGTTTGAGAGGAGTAGTTCTCCATCTGATACTATGTTTGACATTGACCATTCTTCTGCCCATCAGTTTACTGTGGAATCTGATATTGAAGGGGAGATTTACACTAACATGGGAAAGGGTACTTGCAATATCATGCATTGCAATGTCAGTAGATCCCTTGTTCTTTTACATTCCAGTTGTTGATGAGAATAGCAAGTGTCTTGGAATGGACAGAACATTAAGCAATACAGTTCTTGTGTTGCGATCACTTACAGATCTCACTTTTACACTCCATATTATTGCTCTAATTCATGATCGGATCGACATCCCCTCAAACTCTGACTCTGACCCGGGAAAGCATATTTATGAACGCATACTTAGGAGGATGAAGTGGTTGTCTAAAGATATCATAATTGACGTTATTGCTATACTTCCCATCCCACAGGTCACAATAATAATAGTCCTTTTCAGAATGAGAGCGTCGGGGTATCTATATGAAATAGCCATTGGCAACATCTGTCTTCCTTTACAATTTTTTGCAAGGGGTTACCAAATCTATCACTTCCATAAGCAATTTCAGATGCTTGGGAAATGGGCTAGAAGTGTATTCTATTTTCTCATGTACATCATGGCTGGTCATGTTTTCGGAGCATATTGGTACTTTTTGTCCATTCAAAGAGAGATATCGTGTTGGCATCAGGCATGTAGAAATACTAAAGGGTGTAGAGCCACTAATTATTGCGAGGACACCAGTTCTTCAGCAGATATTACACTCCTAAATGATTTTTGTCCTATAAATCCATCCAATGCAACACTATTTGATTTTGGAATATTTCTTGATGCCCTTCAATCTGGTAATACAGGATCGATAAGTTTCACAACAAAGTTTTTTTATACTTTCTGGTGGGGCATTAGAAACCTGAGTAATTTTGGAAGTGACTTGGAAACAAGTAACTATGTGTGGGAAAACTGCTTTACAATTTTTATTTCCCTTGTTGGCTTGCTTCTGTTTCTATATCTCATGGGAAATGTGCAGGTATGTGGTGACATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

432

Amino Acids

49.24

Weight (kDa)

8.51

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05120
rosa_chinensis	RchiOBHm_Chr1g0324611 RchiOBHm_Chr5g0014651 RchiOBHm_Chr5g0014741
rosa_laevigata	RLG00000030187 RLG00000032136 RLG00000032137
rosa_multiflora	Rmu_sc0003893.1_g000002 Rmu_sc0003893.1_g000003 Rmu_sc0003893.1_g000007 Rmu_sc0013610.1_g000012
rosa_roxburghii	Rroxscaffold_159G00432980 Rroxscaffold_159G00432990 Rroxscaffold_1G00061790 Rroxscaffold_4G00325310 Rroxscaffold_4G00325330
rosa_rugosa	Rorug01G0047100.1 Rorug01G0047300 Rorug05G0020400 Rorug05G0020500
rosa_samantha	Rh1AG062700 Rh1AG062900 Rh1BG053100 Rh1CG064800 Rh1DG068900 Rh1DG069800 Rh5AG115900 Rh5BG112300 Rh5BG112800 Rh5CG124400 Rh7BG358300
rosa_wichuraiana	Rw1G005330 Rw5G009990 Rw5G010000 Rw5G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1270
AclI	AACGTT	1 cut(s)	82
AclWI	GGATC	3 cut(s)	413, 572, 1117
AcuI	CTGAAG	2 cut(s)	117, 987
AfaI	GTAC	4 cut(s)	70, 387, 869, 905
AflII	CTTAAG	1 cut(s)	31
AgsI	TTSAA	4 cut(s)	254, 355, 920, 1094
AjuI	GAANNNNNNNTTGG	2 cut(s)	735, 767
AluBI	AGCT	3 cut(s)	36, 60, 146
AluI	AGCT	3 cut(s)	36, 60, 146
AlwI	GGATC	3 cut(s)	413, 572, 1117
Ama87I	CYCGRG	1 cut(s)	595
Asp700I	GAANNNNTTC	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	2 cut(s)	596, 597
AsuHPI	GGTGA	1 cut(s)	177
AvaI	CYCGRG	1 cut(s)	595
AvaII	GGWCC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	758
BccI	CCATC	5 cut(s)	49, 297, 335, 689, 1054
BcnI	CCSGG	2 cut(s)	596, 597
BfaI	CTAG	1 cut(s)	843
BfrI	CTTAAG	1 cut(s)	31
BfuAI	ACCTGC	1 cut(s)	1270
BglII	AGATCT	1 cut(s)	520
Bme1390I	CCNGG	2 cut(s)	596, 597
Bme18I	GGWCC	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	595
BmgT120I	GGNCC	1 cut(s)	117
BmrFI	CCNGG	2 cut(s)	596, 597
BmsI	GCATC	4 cut(s)	252, 816, 949, 1075
BpiI	GAAGAC	1 cut(s)	758
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
BpuMI	CCSGG	2 cut(s)	596, 597
Bsa29I	ATCGAT	1 cut(s)	1112
BsaAI	YACGTR	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	569
BsaJI	CCNNGG	1 cut(s)	595
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bse1I	ACTGG	2 cut(s)	440, 996
Bse3DI	GCAATG	2 cut(s)	402, 414
Bse8I	GATNNNNATC	1 cut(s)	569
BseCI	ATCGAT	1 cut(s)	1112
BseDI	CCNNGG	1 cut(s)	595
BseGI	GGATG	4 cut(s)	570, 636, 681, 1046
BseJI	GATNNNNATC	1 cut(s)	569
BseMI	GCAATG	2 cut(s)	402, 414
BseMII	CTCAG	1 cut(s)	1157
BseNI	ACTGG	2 cut(s)	440, 996
BseRI	GAGGAG	1 cut(s)	291
BsgI	GTGCAG	1 cut(s)	1298
BshVI	ATCGAT	1 cut(s)	1112
BsiHKCI	CYCGRG	1 cut(s)	595
BsiSI	CCGG	1 cut(s)	596
BsoBI	CYCGRG	1 cut(s)	595
Bsp1407I	TGTACA	1 cut(s)	867
Bsp143I	GATC	6 cut(s)	418, 509, 520, 559, 564, 1109
BspCNI	CTCAG	1 cut(s)	1158
BspDI	ATCGAT	1 cut(s)	1112
BspHI	TCATGA	1 cut(s)	556
BspMI	ACCTGC	1 cut(s)	1270
BspPI	GGATC	3 cut(s)	413, 572, 1117
BspTI	CTTAAG	1 cut(s)	31
BsrDI	GCAATG	2 cut(s)	402, 414
BsrGI	TGTACA	1 cut(s)	867
BsrI	ACTGG	2 cut(s)	440, 996
BssECI	CCNNGG	1 cut(s)	595
BssMI	GATC	6 cut(s)	418, 509, 520, 559, 564, 1109
Bst4CI	ACNGT	3 cut(s)	68, 339, 496
BstAFI	CTTAAG	1 cut(s)	31
BstAUI	TGTACA	1 cut(s)	867
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	1247
BstDEI	CTNAG	3 cut(s)	170, 623, 1166
BstEII	GGTNACC	2 cut(s)	183, 791
BstF5I	GGATG	4 cut(s)	570, 636, 681, 1046
BstKTI	GATC	6 cut(s)	421, 512, 523, 562, 567, 1112
BstMBI	GATC	6 cut(s)	418, 509, 520, 559, 564, 1109
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNSI	RCATGY	2 cut(s)	198, 951
BstPI	GGTNACC	2 cut(s)	183, 791
BstSCI	CCNGG	2 cut(s)	594, 595
BstV2I	GAAGAC	1 cut(s)	758
BstX2I	RGATCY	2 cut(s)	418, 520
BstYI	RGATCY	2 cut(s)	418, 520
Bsu15I	ATCGAT	1 cut(s)	1112
BsuTUI	ATCGAT	1 cut(s)	1112
BtsCI	GGATG	4 cut(s)	570, 636, 681, 1046
BtsIMutI	CAGTG	1 cut(s)	122
BveI	ACCTGC	1 cut(s)	1270
Cac8I	GCNNGC	1 cut(s)	1247
CciI	TCATGA	1 cut(s)	556
Cfr13I	GGNCC	1 cut(s)	117
Cfr9I	CCCGGG	1 cut(s)	595
ClaI	ATCGAT	1 cut(s)	1112
CseI	GACGC	2 cut(s)	13, 714
Csp6I	GTAC	4 cut(s)	69, 386, 868, 904
CviJI	RGCY	8 cut(s)	36, 60, 146, 749, 842, 878, 974, 1245
CviKI_1	RGCY	8 cut(s)	36, 60, 146, 749, 842, 878, 974, 1245
CviQI	GTAC	4 cut(s)	69, 386, 868, 904
DdeI	CTNAG	3 cut(s)	170, 623, 1166
DpnI	GATC	6 cut(s)	420, 511, 522, 561, 566, 1111
DpnII	GATC	6 cut(s)	418, 509, 520, 559, 564, 1109
Eco32I	GATATC	2 cut(s)	652, 930
Eco47I	GGWCC	1 cut(s)	117
Eco57I	CTGAAG	2 cut(s)	117, 987
Eco88I	CYCGRG	1 cut(s)	595
Eco91I	GGTNACC	2 cut(s)	183, 791
EcoO65I	GGTNACC	2 cut(s)	183, 791
EcoRV	GATATC	2 cut(s)	652, 930
EcoT22I	ATGCAT	1 cut(s)	404
FokI	GGATG	4 cut(s)	557, 643, 668, 1033
FspBI	CTAG	1 cut(s)	843
HapII	CCGG	1 cut(s)	596
HgaI	GACGC	2 cut(s)	13, 714
HindIII	AAGCTT	2 cut(s)	34, 144
HinfI	GANTC	3 cut(s)	11, 343, 587
HpaII	CCGG	1 cut(s)	596
HphI	GGTGA	1 cut(s)	177
Hpy166II	GTNNAC	3 cut(s)	86, 120, 335
Hpy188I	TCNGA	9 cut(s)	242, 294, 348, 564, 586, 592, 716, 825, 893
Hpy188III	TCNNGA	3 cut(s)	254, 557, 1082
Hpy8I	GTNNAC	3 cut(s)	86, 120, 335
Hpy99I	CGWCG	1 cut(s)	730
HpyAV	CCTTC	2 cut(s)	349, 1100
HpyCH4III	ACNGT	3 cut(s)	68, 339, 496
HpyCH4IV	ACGT	4 cut(s)	71, 82, 88, 663
HpyCH4V	TGCA	7 cut(s)	101, 392, 402, 407, 785, 1055, 1279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	3 cut(s)	170, 623, 1166
HpySE526I	ACGT	4 cut(s)	71, 82, 88, 663
Kzo9I	GATC	6 cut(s)	418, 509, 520, 559, 564, 1109
LmnI	GCTCC	1 cut(s)	893
LweI	GCATC	4 cut(s)	252, 816, 949, 1075
MaeI	CTAG	1 cut(s)	843
MaeII	ACGT	4 cut(s)	71, 82, 88, 663
MaeIII	GTNAC	7 cut(s)	157, 183, 691, 791, 1181, 1196, 1289
MalI	GATC	6 cut(s)	420, 511, 522, 561, 566, 1111
MboI	GATC	6 cut(s)	418, 509, 520, 559, 564, 1109
MboII	GAAGA	3 cut(s)	311, 758, 993
MflI	RGATCY	2 cut(s)	418, 520
MluCI	AATT	8 cut(s)	102, 552, 657, 776, 818, 979, 1171, 1224
MlyI	GAGTC	2 cut(s)	5, 581
MmeI	TCCRAC	2 cut(s)	119, 184
MnlI	CCTC	6 cut(s)	200, 226, 269, 586, 621, 982
Mph1103I	ATGCAT	1 cut(s)	404
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	4 cut(s)	32, 62, 138, 485
MslI	CAYNNNNRTG	4 cut(s)	193, 373, 407, 609
MspCI	CTTAAG	1 cut(s)	31
MspI	CCGG	1 cut(s)	596
MspR9I	CCNGG	2 cut(s)	596, 597
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	2 cut(s)	596, 597
NdeII	GATC	6 cut(s)	418, 509, 520, 559, 564, 1109
NmuCI	GTSAC	4 cut(s)	183, 691, 1181, 1289
NsiI	ATGCAT	1 cut(s)	404
NspI	RCATGY	2 cut(s)	198, 951
PagI	TCATGA	1 cut(s)	556
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	343
PleI	GAGTC	2 cut(s)	5, 581
PpsI	GAGTC	2 cut(s)	5, 581
Ppu21I	YACGTR	1 cut(s)	89
Psp1406I	AACGTT	1 cut(s)	82
PspEI	GGTNACC	2 cut(s)	183, 791
PspPI	GGNCC	1 cut(s)	117
PsuI	RGATCY	2 cut(s)	418, 520
RsaI	GTAC	4 cut(s)	70, 387, 869, 905
RsaNI	GTAC	4 cut(s)	69, 386, 868, 904
RseI	CAYNNNNRTG	4 cut(s)	193, 373, 407, 609
SaqAI	TTAA	4 cut(s)	32, 62, 138, 485
Sau3AI	GATC	6 cut(s)	418, 509, 520, 559, 564, 1109
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	2 cut(s)	5, 581
ScrFI	CCNGG	2 cut(s)	596, 597
SfaNI	GCATC	4 cut(s)	252, 816, 949, 1075
SinI	GGWCC	1 cut(s)	117
SmaI	CCCGGG	1 cut(s)	597
SmiMI	CAYNNNNRTG	4 cut(s)	193, 373, 407, 609
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	8 cut(s)	102, 552, 657, 776, 818, 979, 1171, 1224
SspI	AATATT	1 cut(s)	1077
SspMI	CTAG	1 cut(s)	843
StyD4I	CCNGG	2 cut(s)	594, 595
TaaI	ACNGT	3 cut(s)	68, 339, 496
TaiI	ACGT	4 cut(s)	74, 85, 91, 666
TaqI	TCGA	2 cut(s)	567, 1112
TasI	AATT	8 cut(s)	102, 552, 657, 776, 818, 979, 1171, 1224
TatI	WGTACW	1 cut(s)	867
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	4 cut(s)	32, 62, 138, 485
Tru9I	TTAA	4 cut(s)	32, 62, 138, 485
TscAI	CASTG	1 cut(s)	129
TseFI	GTSAC	4 cut(s)	183, 691, 1181, 1289
Tsp45I	GTSAC	4 cut(s)	183, 691, 1181, 1289
TspDTI	ATGAA	4 cut(s)	545, 627, 647, 756
TspMI	CCCGGG	1 cut(s)	595
TspRI	CASTG	1 cut(s)	129
Vha464I	CTTAAG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	117
XceI	RCATGY	2 cut(s)	198, 951
XmaI	CCCGGG	1 cut(s)	595
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	1 cut(s)	843
Zsp2I	ATGCAT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.