Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003689

Physical Location & Seq

Genomic Coordinates Reverse (-)

1340850 .. 1343105

Gene Structure 2256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0020400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGATTCAGCTACTGTTCATAGTGATCATCTCAGAGATGGCTCTGATTCTGGCGTGTTTGTTCAAGACCCCATTGAGGAAGCTTGTGATAATGGGCCTGGATCAGATCAAGCGAGGACGTGGGCCTGTGGTGGTGAAGACGGTGGCGGGAACGGTGTTTGTGGTGTTGTTGACCAGCCTCTACGGTGTGATGACGATCAAGAAGAGTGGGATGACTGGAACCGATGCGGTAGGGATTCTTAGTCCCACGGATCAGATCCTCATGTTCAAGCACCTCCTTGAAGTCACTTTAATGGGGTTCTTCTTATTCCTTGTCCTTATGATAGACAGAATACACCACTACATTAGAGAGCTTCGTGTACGAAGAAAGACCATGGAGGCCATAAAGAAACAGAGCCGAGGATCTGAGGATGGGAAAGCTGGTGGTTTGGACGAGATCAAGGCCTTGGAGAATGAGATGAATACATCGCGCTCAAGACTCAAACAACTAGAATCTGACATTGAGACAAAGACGAAAGAAGCTCATGCTGCAGAAGCCAATGTTGTTACTCTAAGGAAACAATCTGAAGGCTTCCTTCTCGAGTATGATCGTTTAGTTGAAGAAAACCAAAATTTAAAGAACCAATTGCAGTCGTTGGCACATTCAGGTAGCAAGAAAGATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

24.83

Weight (kDa)

9.49

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05120
rosa_chinensis	RchiOBHm_Chr1g0324611 RchiOBHm_Chr5g0014651 RchiOBHm_Chr5g0014741
rosa_laevigata	RLG00000030187 RLG00000032136 RLG00000032137
rosa_multiflora	Rmu_sc0003893.1_g000002 Rmu_sc0003893.1_g000003 Rmu_sc0003893.1_g000007 Rmu_sc0013610.1_g000012
rosa_roxburghii	Rroxscaffold_159G00432980 Rroxscaffold_159G00432990 Rroxscaffold_1G00061790 Rroxscaffold_4G00325310 Rroxscaffold_4G00325330
rosa_rugosa	Rorug01G0047100.1 Rorug01G0047300 Rorug05G0020400 Rorug05G0020500
rosa_samantha	Rh1AG062700 Rh1AG062900 Rh1BG053100 Rh1CG064800 Rh1DG068900 Rh1DG069800 Rh5AG115900 Rh5BG112300 Rh5BG112800 Rh5CG124400 Rh7BG358300
rosa_wichuraiana	Rw1G005330 Rw5G009990 Rw5G010000 Rw5G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	469
AciI	CCGC	2 cut(s)	146, 227
AclWI	GGATC	4 cut(s)	108, 250, 258, 409
AcsI	RAATTY	1 cut(s)	610
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	4 cut(s)	64, 268, 281, 599
AjiI	CACGTC	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	5 cut(s)	10, 82, 352, 419, 521
AluI	AGCT	5 cut(s)	10, 82, 352, 419, 521
Alw26I	GTCTC	1 cut(s)	497
AlwI	GGATC	4 cut(s)	108, 250, 258, 409
AlwNI	CAGNNNCTG	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	578
AoxI	GGCC	4 cut(s)	94, 122, 378, 441
ApeKI	GCWGC	1 cut(s)	527
ApoI	RAATTY	1 cut(s)	610
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	2 cut(s)	94, 122
AsuHPI	GGTGA	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	578
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	2 cut(s)	31, 404
BciT130I	CCWGG	1 cut(s)	98
BclI	TGATCA	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	497
BfaI	CTAG	1 cut(s)	488
BfmI	CTRYAG	1 cut(s)	528
BisI	GCNGC	1 cut(s)	528
BlsI	GCNGC	1 cut(s)	529
Bme1390I	CCNGG	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	578
BmgBI	CACGTC	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	94, 122
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	457
BsaBI	GATNNNNATC	1 cut(s)	194
BsaJI	CCNNGG	4 cut(s)	246, 372, 397, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	220
Bse8I	GATNNNNATC	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	4 cut(s)	246, 372, 397, 444
BseGI	GGATG	2 cut(s)	216, 415
BseJI	GATNNNNATC	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	2 cut(s)	45, 396
BseNI	ACTGG	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	514
Bsh1236I	CGCG	1 cut(s)	469
BshFI	GGCC	4 cut(s)	96, 124, 380, 443
BsiHKCI	CYCGRG	1 cut(s)	578
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	4 cut(s)	96, 124, 380, 443
BsoBI	CYCGRG	1 cut(s)	578
Bsp143I	GATC	9 cut(s)	24, 100, 105, 195, 250, 255, 401, 435, 586
Bsp19I	CCATGG	1 cut(s)	372
BspACI	CCGC	2 cut(s)	146, 227
BspANI	GGCC	4 cut(s)	96, 124, 380, 443
BspCNI	CTCAG	2 cut(s)	44, 397
BspFNI	CGCG	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	220
BspMAI	CTGCAG	1 cut(s)	532
BspPI	GGATC	4 cut(s)	108, 250, 258, 409
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	4 cut(s)	246, 372, 397, 444
BssMI	GATC	9 cut(s)	24, 100, 105, 195, 250, 255, 401, 435, 586
BssT1I	CCWWGG	2 cut(s)	372, 444
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	4 cut(s)	15, 142, 154, 185
Bst6I	CTCTTC	1 cut(s)	197
BstDEI	CTNAG	4 cut(s)	31, 239, 405, 551
BstDSI	CCRYGG	2 cut(s)	246, 372
BstF5I	GGATG	2 cut(s)	216, 415
BstFNI	CGCG	1 cut(s)	469
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	9 cut(s)	27, 103, 108, 198, 253, 258, 404, 438, 589
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	9 cut(s)	24, 100, 105, 195, 250, 255, 401, 435, 586
BstMWI	GCNNNNNNNGC	2 cut(s)	527, 533
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	96
BstSFI	CTRYAG	1 cut(s)	528
BstUI	CGCG	1 cut(s)	469
BstV1I	GCAGC	1 cut(s)	514
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	2 cut(s)	255, 401
BstYI	RGATCY	2 cut(s)	255, 401
BsuRI	GGCC	4 cut(s)	96, 124, 380, 443
BtgI	CCRYGG	2 cut(s)	246, 372
BtgZI	GCGATG	1 cut(s)	450
BtrI	CACGTC	1 cut(s)	119
BtsCI	GGATG	2 cut(s)	216, 415
CaiI	CAGNNNCTG	1 cut(s)	13
CfoI	GCGC	1 cut(s)	471
Cfr13I	GGNCC	2 cut(s)	94, 122
Csp6I	GTAC	1 cut(s)	359
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	3 cut(s)	262, 373, 524
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	4 cut(s)	31, 239, 405, 551
DpnI	GATC	9 cut(s)	26, 102, 107, 197, 252, 257, 403, 437, 588
DpnII	GATC	9 cut(s)	24, 100, 105, 195, 250, 255, 401, 435, 586
DraI	TTTAAA	1 cut(s)	615
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Eco130I	CCWWGG	2 cut(s)	372, 444
Eco147I	AGGCCT	1 cut(s)	443
Eco57I	CTGAAG	1 cut(s)	585
Eco88I	CYCGRG	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	2 cut(s)	372, 444
ErhI	CCWWGG	2 cut(s)	372, 444
FaeI	CATG	3 cut(s)	265, 376, 527
FaiI	YATR	8 cut(s)	20, 263, 320, 374, 383, 525, 585, 664
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	3 cut(s)	261, 372, 523
FauI	CCCGC	1 cut(s)	139
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	528
FokI	GGATG	2 cut(s)	223, 422
Fsp4HI	GCNGC	1 cut(s)	528
FspBI	CTAG	1 cut(s)	488
GlaI	GCGC	1 cut(s)	470
GluI	GCNGC	1 cut(s)	528
HaeIII	GGCC	4 cut(s)	96, 124, 380, 443
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	3 cut(s)	265, 376, 527
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	6 cut(s)	4, 46, 235, 477, 491, 659
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	2 cut(s)	171, 359
Hpy188I	TCNGA	7 cut(s)	34, 45, 105, 255, 406, 496, 565
Hpy188III	TCNNGA	4 cut(s)	64, 199, 474, 578
Hpy8I	GTNNAC	2 cut(s)	171, 359
HpyAV	CCTTC	2 cut(s)	560, 584
HpyCH4III	ACNGT	4 cut(s)	15, 142, 154, 185
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	2 cut(s)	530, 628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	527, 533
HpyF3I	CTNAG	4 cut(s)	31, 239, 405, 551
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	3 cut(s)	265, 376, 527
HspAI	GCGC	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	9 cut(s)	24, 100, 105, 195, 250, 255, 401, 435, 586
LpnPI	CCDG	8 cut(s)	35, 83, 110, 138, 187, 201, 405, 630
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	2 cut(s)	283, 544
MalI	GATC	9 cut(s)	26, 102, 107, 197, 252, 257, 403, 437, 588
MboI	GATC	9 cut(s)	24, 100, 105, 195, 250, 255, 401, 435, 586
MboII	GAAGA	5 cut(s)	148, 214, 292, 375, 611
MfeI	CAATTG	1 cut(s)	623
MflI	RGATCY	2 cut(s)	255, 401
MluCI	AATT	2 cut(s)	610, 623
MlyI	GAGTC	1 cut(s)	471
MnlI	CCTC	8 cut(s)	69, 107, 188, 269, 284, 370, 392, 400
MseI	TTAA	2 cut(s)	290, 614
MslI	CAYNNNNRTG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	98
MunI	CAATTG	1 cut(s)	623
MvaI	CCWGG	1 cut(s)	98
MvnI	CGCG	1 cut(s)	469
MwoI	GCNNNNNNNGC	2 cut(s)	527, 533
NcoI	CCATGG	1 cut(s)	372
NdeII	GATC	9 cut(s)	24, 100, 105, 195, 250, 255, 401, 435, 586
NlaIII	CATG	3 cut(s)	265, 376, 527
NlaIV	GGNNCC	1 cut(s)	220
NmeAIII	GCCGAG	1 cut(s)	422
NmuCI	GTSAC	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	578
PceI	AGGCCT	1 cut(s)	443
PfeI	GAWTC	5 cut(s)	4, 46, 235, 491, 659
PkrI	GCNGC	1 cut(s)	529
PleI	GAGTC	1 cut(s)	471
PpsI	GAGTC	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	2 cut(s)	94, 122
PstI	CTGCAG	1 cut(s)	532
PstNI	CAGNNNCTG	1 cut(s)	13
PsuI	RGATCY	2 cut(s)	255, 401
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	290, 614
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	9 cut(s)	24, 100, 105, 195, 250, 255, 401, 435, 586
Sau96I	GGNCC	2 cut(s)	94, 122
SchI	GAGTC	1 cut(s)	471
ScrFI	CCNGG	1 cut(s)	98
SetI	ASST	8 cut(s)	12, 84, 121, 276, 354, 421, 523, 649
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	528
Sfr274I	CTCGAG	1 cut(s)	578
SlaI	CTCGAG	1 cut(s)	578
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	2 cut(s)	472, 578
SmoI	CTYRAG	2 cut(s)	472, 578
Sse9I	AATT	2 cut(s)	610, 623
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	2 cut(s)	146, 227
SspMI	CTAG	1 cut(s)	488
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	1 cut(s)	96
StyI	CCWWGG	2 cut(s)	372, 444
TaaI	ACNGT	4 cut(s)	15, 142, 154, 185
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	1 cut(s)	579
TasI	AATT	2 cut(s)	610, 623
TfiI	GAWTC	5 cut(s)	4, 46, 235, 491, 659
Tru1I	TTAA	2 cut(s)	290, 614
Tru9I	TTAA	2 cut(s)	290, 614
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	1 cut(s)	527
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	3 cut(s)	7, 473, 651
TspGWI	ACGGA	1 cut(s)	263
XapI	RAATTY	1 cut(s)	610
XhoI	CTCGAG	1 cut(s)	578
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.