Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003893.1

Orthogroup ID

OG0003689

Physical Location & Seq

Genomic Coordinates Forward (+)

22529 .. 24548

Gene Structure 2020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003893.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atgggaaatgtgcagacatatattctgtgggaaactcaacaagcattggacaatgagaaggagaaaattaaatccaaatttgaagctctaggtacatggatggtaagaaatggtatccctgaagaagtgaagaccgaagcagtgaaaatcataacagaaaaggaggtagtggagaaaaactacgatgctgatgtggacttgctttttgttttcaatgctcttactggggatgaaaacatgcgtatcaggagtgttttgaagaggcatttgtgcctaaatgccctacagaaagtatccatccttgatcatgttcttcaagcagtagtgattaatgccctcgagccagtagtctacaaggagaatagctgcgtggttcaagcaggaaattcaattgatagaatgctcatcatcacagaaggcgtaattttctatacagacaacaccagatctaatgttgcacctgaagcaggcacctcatccacaatgaaaatccgtaaaccacgttttgagaaaggtgaagtttatggagaagaggttctgactataggcgagaacgacccttttcctacatcagcccgagatgtcaagtgcgaaagaaaagtagaagccttcgctctcgcatgcagaggttttcctaacttcaaatacgtatccgacatgatgcggcggcgtaagtccccagatggatcgaatgatccggagctagtatacaaggcatatggggagctgacaactacaagatcagagaagttaaagcaaaaacagatgaagatacttgagtggctgtcaagaaacgtccgggatgaagatctgaagacattggtcatggaacacatgaaggctagtaacgtactggaaaagaactttgatgctgaggtggatgtcaagtatctgttctctgttggtctttcctgggatatcgaatatcgtataaagaagcagatatgcatcaattctctgagtaaggtatgtaagatccatctatctttgttactataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

332

Amino Acids

38.03

Weight (kDa)

6.92

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05120
rosa_chinensis	RchiOBHm_Chr1g0324611 RchiOBHm_Chr5g0014651 RchiOBHm_Chr5g0014741
rosa_laevigata	RLG00000030187 RLG00000032136 RLG00000032137
rosa_multiflora	Rmu_sc0003893.1_g000002 Rmu_sc0003893.1_g000003 Rmu_sc0003893.1_g000007 Rmu_sc0013610.1_g000012
rosa_roxburghii	Rroxscaffold_159G00432980 Rroxscaffold_159G00432990 Rroxscaffold_1G00061790 Rroxscaffold_4G00325310 Rroxscaffold_4G00325330
rosa_rugosa	Rorug01G0047100.1 Rorug01G0047300 Rorug05G0020400 Rorug05G0020500
rosa_samantha	Rh1AG062700 Rh1AG062900 Rh1BG053100 Rh1CG064800 Rh1DG068900 Rh1DG069800 Rh5AG115900 Rh5BG112300 Rh5BG112800 Rh5CG124400 Rh7BG358300
rosa_wichuraiana	Rw1G005330 Rw5G009990 Rw5G010000 Rw5G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AccI	GTMKAC	2 cut(s)	351, 708
AccIII	TCCGGA	1 cut(s)	697
AciI	CCGC	2 cut(s)	664, 667
AclWI	GGATC	3 cut(s)	689, 694, 970
AcsI	RAATTY	2 cut(s)	77, 385
AcuI	CTGAAG	3 cut(s)	141, 483, 833
AfaI	GTAC	2 cut(s)	94, 852
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	7 cut(s)	83, 214, 259, 317, 377, 390, 643
AjnI	CCWGG	1 cut(s)	911
AloI	GAACNNNNNNTCC	2 cut(s)	519, 551
AluBI	AGCT	4 cut(s)	86, 366, 703, 727
AluI	AGCT	4 cut(s)	86, 366, 703, 727
AlwI	GGATC	3 cut(s)	689, 694, 970
Ama87I	CYCGRG	2 cut(s)	338, 576
Aor13HI	TCCGGA	1 cut(s)	697
ApeKI	GCWGC	1 cut(s)	366
ApoI	RAATTY	2 cut(s)	77, 385
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AseI	ATTAAT	1 cut(s)	330
Asp700I	GAANNNNTTC	1 cut(s)	534
AsuC2I	CCSGG	1 cut(s)	800
AsuHPI	GGTGA	1 cut(s)	527
AvaI	CYCGRG	2 cut(s)	338, 576
BaeI	ACNNNNGTAYC	4 cut(s)	226, 259, 764, 797
BanI	GGYRCC	1 cut(s)	470
BbsI	GAAGAC	2 cut(s)	137, 821
BbvCI	CCTCAGC	1 cut(s)	873
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	4 cut(s)	94, 305, 677, 987
BciT130I	CCWGG	1 cut(s)	913
BciVI	GTATCC	3 cut(s)	125, 304, 661
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	800
BfaI	CTAG	3 cut(s)	89, 704, 843
BfmI	CTRYAG	2 cut(s)	284, 543
BfuI	GTATCC	3 cut(s)	125, 304, 661
BglII	AGATCT	2 cut(s)	446, 808
BisI	GCNGC	3 cut(s)	367, 665, 668
BlsI	GCNGC	3 cut(s)	368, 666, 669
Bme1390I	CCNGG	2 cut(s)	800, 913
BmeT110I	CYCGRG	2 cut(s)	338, 576
BmiI	GGNNCC	1 cut(s)	472
BmrFI	CCNGG	2 cut(s)	800, 913
BmrI	ACTGGG	1 cut(s)	234
BmsI	GCATC	4 cut(s)	175, 651, 859, 957
BmuI	ACTGGG	1 cut(s)	234
BoxI	GACNNNNGTC	1 cut(s)	821
BpiI	GAAGAC	2 cut(s)	137, 821
Bpu10I	CCTNAGC	1 cut(s)	873
BpuEI	CTTGAG	1 cut(s)	797
BpuMI	CCSGG	1 cut(s)	800
BsaAI	YACGTR	1 cut(s)	649
BsaBI	GATNNNNATC	2 cut(s)	807, 947
BsaJI	CCNNGG	1 cut(s)	912
BsaWI	WCCGGW	1 cut(s)	697
BsaXI	ACNNNNNCTCC	2 cut(s)	519, 549
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse1I	ACTGG	3 cut(s)	229, 344, 858
Bse8I	GATNNNNATC	2 cut(s)	807, 947
BseAI	TCCGGA	1 cut(s)	697
BseBI	CCWGG	1 cut(s)	913
BseDI	CCNNGG	1 cut(s)	912
BseGI	GGATG	6 cut(s)	105, 235, 297, 476, 808, 886
BseJI	GATNNNNATC	2 cut(s)	807, 947
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMII	CTCAG	2 cut(s)	864, 950
BseNI	ACTGG	3 cut(s)	229, 344, 858
BseXI	GCAGC	1 cut(s)	353
BsgI	GTGCAG	1 cut(s)	32
BshNI	GGYRCC	1 cut(s)	470
BsiHKCI	CYCGRG	2 cut(s)	338, 576
BsiSI	CCGG	2 cut(s)	698, 799
BslFI	GGGAC	1 cut(s)	661
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	661
BsmI	GAATGC	1 cut(s)	405
BsoBI	CYCGRG	2 cut(s)	338, 576
Bsp13I	TCCGGA	1 cut(s)	697
Bsp143I	GATC	7 cut(s)	304, 446, 686, 694, 740, 808, 975
BspACI	CCGC	2 cut(s)	664, 667
BspCNI	CTCAG	2 cut(s)	865, 951
BspEI	TCCGGA	1 cut(s)	697
BspLI	GGNNCC	1 cut(s)	472
BspPI	GGATC	3 cut(s)	689, 694, 970
BspT107I	GGYRCC	1 cut(s)	470
BsrI	ACTGG	3 cut(s)	229, 344, 858
BssECI	CCNNGG	1 cut(s)	912
BssMI	GATC	7 cut(s)	304, 446, 686, 694, 740, 808, 975
BssNAI	GTATAC	1 cut(s)	709
Bst1107I	GTATAC	1 cut(s)	709
Bst2UI	CCWGG	1 cut(s)	913
Bst6I	CTCTTC	2 cut(s)	254, 525
BstBAI	YACGTR	1 cut(s)	649
BstC8I	GCNNGC	2 cut(s)	469, 622
BstDEI	CTNAG	2 cut(s)	873, 959
BstENI	CCTNNNNNAGG	1 cut(s)	465
BstF5I	GGATG	6 cut(s)	105, 235, 297, 476, 808, 886
BstKTI	GATC	7 cut(s)	307, 449, 689, 697, 743, 811, 978
BstMBI	GATC	7 cut(s)	304, 446, 686, 694, 740, 808, 975
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	1 cut(s)	913
BstNSI	RCATGY	2 cut(s)	241, 624
BstPAI	GACNNNNGTC	1 cut(s)	821
BstSCI	CCNGG	2 cut(s)	798, 911
BstSFI	CTRYAG	2 cut(s)	284, 543
BstSNI	TACGTA	1 cut(s)	649
BstV1I	GCAGC	1 cut(s)	353
BstV2I	GAAGAC	2 cut(s)	137, 821
BstX2I	RGATCY	3 cut(s)	446, 808, 975
BstYI	RGATCY	3 cut(s)	446, 808, 975
BstZ17I	GTATAC	1 cut(s)	709
BsuI	GTATCC	3 cut(s)	125, 304, 661
BtsCI	GGATG	6 cut(s)	105, 235, 297, 476, 808, 886
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	469, 622
Csp6I	GTAC	2 cut(s)	93, 851
CviAII	CATG	7 cut(s)	96, 238, 308, 621, 658, 826, 835
CviJI	RGCY	9 cut(s)	86, 343, 366, 575, 608, 703, 727, 784, 842
CviKI_1	RGCY	9 cut(s)	86, 343, 366, 575, 608, 703, 727, 784, 842
CviQI	GTAC	2 cut(s)	93, 851
DdeI	CTNAG	2 cut(s)	873, 959
DpnI	GATC	7 cut(s)	306, 448, 688, 696, 742, 810, 977
DpnII	GATC	7 cut(s)	304, 446, 686, 694, 740, 808, 975
Eam1104I	CTCTTC	2 cut(s)	254, 525
EarI	CTCTTC	2 cut(s)	254, 525
Eco105I	TACGTA	1 cut(s)	649
Eco32I	GATATC	1 cut(s)	919
Eco57I	CTGAAG	3 cut(s)	141, 483, 833
Eco88I	CYCGRG	2 cut(s)	338, 576
EcoNI	CCTNNNNNAGG	1 cut(s)	465
EcoRII	CCWGG	1 cut(s)	911
EcoRV	GATATC	1 cut(s)	919
EcoT22I	ATGCAT	1 cut(s)	950
FaeI	CATG	7 cut(s)	99, 241, 311, 624, 661, 829, 838
FaqI	GGGAC	1 cut(s)	661
FatI	CATG	7 cut(s)	95, 237, 307, 620, 657, 825, 834
FauNDI	CATATG	1 cut(s)	718
FbaI	TGATCA	1 cut(s)	304
FblI	GTMKAC	2 cut(s)	351, 708
Fnu4HI	GCNGC	3 cut(s)	367, 665, 668
FokI	GGATG	6 cut(s)	112, 242, 284, 463, 815, 893
Fsp4HI	GCNGC	3 cut(s)	367, 665, 668
FspBI	CTAG	3 cut(s)	89, 704, 843
GluI	GCNGC	3 cut(s)	367, 665, 668
HapII	CCGG	2 cut(s)	698, 799
Hin1II	CATG	7 cut(s)	99, 241, 311, 624, 661, 829, 838
HpaII	CCGG	2 cut(s)	698, 799
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	4 cut(s)	196, 352, 497, 709
Hpy188I	TCNGA	5 cut(s)	540, 655, 745, 813, 960
Hpy188III	TCNNGA	3 cut(s)	247, 698, 789
Hpy8I	GTNNAC	4 cut(s)	196, 352, 497, 709
HpyAV	CCTTC	4 cut(s)	52, 410, 619, 832
HpyCH4IV	ACGT	4 cut(s)	502, 648, 795, 849
HpyCH4V	TGCA	4 cut(s)	13, 458, 624, 948
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	2 cut(s)	873, 959
HpySE526I	ACGT	4 cut(s)	502, 648, 795, 849
Hsp92II	CATG	7 cut(s)	99, 241, 311, 624, 661, 829, 838
Kpn2I	TCCGGA	1 cut(s)	697
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	7 cut(s)	304, 446, 686, 694, 740, 808, 975
LmnI	GCTCC	2 cut(s)	700, 724
Lsp1109I	GCAGC	1 cut(s)	353
LweI	GCATC	4 cut(s)	175, 651, 859, 957
MaeI	CTAG	3 cut(s)	89, 704, 843
MaeII	ACGT	4 cut(s)	502, 648, 795, 849
MaeIII	GTNAC	2 cut(s)	845, 990
MalI	GATC	7 cut(s)	306, 448, 688, 696, 742, 810, 977
MboI	GATC	7 cut(s)	304, 446, 686, 694, 740, 808, 975
MboII	GAAGA	8 cut(s)	134, 142, 271, 305, 542, 781, 818, 826
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	3 cut(s)	446, 808, 975
MluCI	AATT	6 cut(s)	66, 77, 385, 390, 423, 952
MmeI	TCCRAC	1 cut(s)	678
MnlI	CCTC	7 cut(s)	157, 255, 347, 484, 526, 620, 868
Mph1103I	ATGCAT	1 cut(s)	950
MroI	TCCGGA	1 cut(s)	697
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	3 cut(s)	69, 330, 752
MspI	CCGG	2 cut(s)	698, 799
MspR9I	CCNGG	2 cut(s)	800, 913
MunI	CAATTG	1 cut(s)	390
Mva1269I	GAATGC	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	913
MwoI	GCNNNNNNNGC	1 cut(s)	464
NciI	CCSGG	1 cut(s)	800
NdeI	CATATG	1 cut(s)	718
NdeII	GATC	7 cut(s)	304, 446, 686, 694, 740, 808, 975
NlaIII	CATG	7 cut(s)	99, 241, 311, 624, 661, 829, 838
NlaIV	GGNNCC	1 cut(s)	472
NsiI	ATGCAT	1 cut(s)	950
NspI	RCATGY	2 cut(s)	241, 624
PaeI	GCATGC	1 cut(s)	624
PaeR7I	CTCGAG	1 cut(s)	338
PctI	GAATGC	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	534
PfoI	TCCNGGA	1 cut(s)	798
PkrI	GCNGC	3 cut(s)	368, 666, 669
Ppu21I	YACGTR	1 cut(s)	649
PshAI	GACNNNNGTC	1 cut(s)	821
PshBI	ATTAAT	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	911
PspGI	CCWGG	1 cut(s)	911
PspN4I	GGNNCC	1 cut(s)	472
PspXI	VCTCGAGB	1 cut(s)	338
PsuI	RGATCY	3 cut(s)	446, 808, 975
RsaI	GTAC	2 cut(s)	94, 852
RsaNI	GTAC	2 cut(s)	93, 851
SaqAI	TTAA	3 cut(s)	69, 330, 752
SatI	GCNGC	3 cut(s)	367, 665, 668
Sau3AI	GATC	7 cut(s)	304, 446, 686, 694, 740, 808, 975
ScrFI	CCNGG	2 cut(s)	800, 913
SfaNI	GCATC	4 cut(s)	175, 651, 859, 957
SfcI	CTRYAG	2 cut(s)	284, 543
Sfr274I	CTCGAG	1 cut(s)	338
SlaI	CTCGAG	1 cut(s)	338
SmlI	CTYRAG	2 cut(s)	338, 776
SmoI	CTYRAG	2 cut(s)	338, 776
SnaBI	TACGTA	1 cut(s)	649
SphI	GCATGC	1 cut(s)	624
Sse9I	AATT	6 cut(s)	66, 77, 385, 390, 423, 952
SsiI	CCGC	2 cut(s)	664, 667
SspMI	CTAG	3 cut(s)	89, 704, 843
StyD4I	CCNGG	2 cut(s)	798, 911
TaiI	ACGT	4 cut(s)	505, 651, 798, 852
TaqI	TCGA	3 cut(s)	339, 689, 921
TaqII	GACCGA	1 cut(s)	149
TasI	AATT	6 cut(s)	66, 77, 385, 390, 423, 952
TauI	GCSGC	2 cut(s)	667, 670
Tru1I	TTAA	3 cut(s)	69, 330, 752
Tru9I	TTAA	3 cut(s)	69, 330, 752
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	1 cut(s)	366
TspDTI	ATGAA	5 cut(s)	246, 500, 782, 819, 851
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	1 cut(s)	147
VspI	ATTAAT	1 cut(s)	330
XagI	CCTNNNNNAGG	1 cut(s)	465
XapI	RAATTY	2 cut(s)	77, 385
XceI	RCATGY	2 cut(s)	241, 624
XhoI	CTCGAG	1 cut(s)	338
XmiI	GTMKAC	2 cut(s)	351, 708
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	3 cut(s)	89, 704, 843
Zsp2I	ATGCAT	1 cut(s)	950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.