Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003689

Physical Location & Seq

Genomic Coordinates Forward (+)

11313033 .. 11314551

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032137

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAAGATGGATTGCAAGGAGAAGGATATACTTGAGTGGCTGTCAAGAAATGGTGTTCACCGGGATCAGCAGACATCAGTTATGAAACACATAAAGGCTAATAGTGTACTGGAAGAAAACTTGGATGTTGAGGTGGATGTGAGGTATCTATTCTCTATTCGTCTTCCCTGGCATATCGAATATGAAATAAAGAAGGATCTCTGCATGAGTACTCTCCATAAAGTACCTGTACTTGATGGTGTTGATGAAGATGTGTTGTACCGCATCTGTATGTCTCTCGATCCAGTGGTCCTCCCGAAGAATAACTGTGTCGTTAAACCGGGTGGCCAAATTGATCGGATGCTCATCATTGTAGAAGGCGAAATTACTTTGACTGAGCAGACTTTCCATGTTTTAAGTAGATTAAGAAAGAGAGGCAACATTGAAAGAATACTGAAGAAAGGCGATTTCTTTGGGGAGGAACTTCTGACTTGGGCATTCCCTGACGTCTCTATTTCCAAATATAAACCTGATATCTCGAGAAAATATGTTGATTGTTGTGCAAAAGTAGAAGCCTTTGCTCTCACGAAGGAGGGTGTGGAAAGTGTAGTCGCCTACTACCGGGAGGGAACCAACATTTTTGAGGAGTTGGAGAATGATAAAGATGGTGTGGGTGATACTAATGGTACATCCACATCCCCAACTATTGAGCAGAGACTTGATCAGCTTATTCAGCTCCAGGTTGACATGCTTCAACAGCATCGTGATGAAATGGCTAATCAGGAACGGAGATTGGATCAGATAGCTGCATTCCTAGCCAGATTGGGATATCCAGACACACCTCCTCCTGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

31.91

Weight (kDa)

5.14

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05120
rosa_chinensis	RchiOBHm_Chr1g0324611 RchiOBHm_Chr5g0014651 RchiOBHm_Chr5g0014741
rosa_laevigata	RLG00000030187 RLG00000032136 RLG00000032137
rosa_multiflora	Rmu_sc0003893.1_g000002 Rmu_sc0003893.1_g000003 Rmu_sc0003893.1_g000007 Rmu_sc0013610.1_g000012
rosa_roxburghii	Rroxscaffold_159G00432980 Rroxscaffold_159G00432990 Rroxscaffold_1G00061790 Rroxscaffold_4G00325310 Rroxscaffold_4G00325330
rosa_rugosa	Rorug01G0047100.1 Rorug01G0047300 Rorug05G0020400 Rorug05G0020500
rosa_samantha	Rh1AG062700 Rh1AG062900 Rh1BG053100 Rh1CG064800 Rh1DG068900 Rh1DG069800 Rh5AG115900 Rh5BG112300 Rh5BG112800 Rh5CG124400 Rh7BG358300
rosa_wichuraiana	Rw1G005330 Rw5G009990 Rw5G010000 Rw5G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	489
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	4 cut(s)	72, 204, 275, 783
AcoI	YGGCCR	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	455
AcyI	GRCGYC	1 cut(s)	486
AfaI	GTAC	6 cut(s)	108, 211, 225, 231, 260, 667
AfiI	CCNNNNNNNGG	1 cut(s)	600
AgsI	TTSAA	2 cut(s)	425, 734
AjnI	CCWGG	2 cut(s)	167, 717
AluBI	AGCT	4 cut(s)	706, 715, 785, 833
AluI	AGCT	4 cut(s)	706, 715, 785, 833
Alw26I	GTCTC	3 cut(s)	279, 493, 688
AlwI	GGATC	4 cut(s)	72, 204, 275, 783
Ama87I	CYCGRG	1 cut(s)	517
AoxI	GGCC	1 cut(s)	325
ApeKI	GCWGC	2 cut(s)	785, 830
AspS9I	GGNCC	1 cut(s)	289
AsuC2I	CCSGG	3 cut(s)	62, 321, 602
AsuHPI	GGTGA	2 cut(s)	50, 665
AvaI	CYCGRG	1 cut(s)	517
AvaII	GGWCC	1 cut(s)	289
BalI	TGGCCA	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	772
BccI	CCATC	2 cut(s)	230, 638
BciT130I	CCWGG	2 cut(s)	169, 719
BclI	TGATCA	1 cut(s)	700
BcnI	CCSGG	3 cut(s)	62, 321, 602
BcoDI	GTCTC	3 cut(s)	279, 493, 688
BfaI	CTAG	1 cut(s)	794
BfmI	CTRYAG	1 cut(s)	828
BisI	GCNGC	2 cut(s)	786, 831
BlsI	GCNGC	2 cut(s)	787, 832
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	5 cut(s)	62, 169, 321, 602, 719
Bme18I	GGWCC	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	517
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	610
BmrFI	CCNGG	5 cut(s)	62, 169, 321, 602, 719
BmsI	GCATC	3 cut(s)	273, 330, 748
BpiI	GAAGAC	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	701
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	3 cut(s)	62, 321, 602
BsaBI	GATNNNNATC	1 cut(s)	344
BsaHI	GRCGYC	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	167
BsaXI	ACNNNNNCTCC	1 cut(s)	808
Bsc4I	CCNNNNNNNGG	1 cut(s)	600
Bse1I	ACTGG	2 cut(s)	114, 284
Bse8I	GATNNNNATC	1 cut(s)	344
BseBI	CCWGG	2 cut(s)	169, 719
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	5 cut(s)	130, 142, 345, 668, 674
BseJI	GATNNNNATC	1 cut(s)	344
BseLI	CCNNNNNNNGG	1 cut(s)	600
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	2 cut(s)	114, 284
BseRI	GAGGAG	2 cut(s)	638, 813
BseXI	GCAGC	1 cut(s)	772
BshFI	GGCC	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	517
BsiSI	CCGG	3 cut(s)	61, 320, 601
BslI	CCNNNNNNNGG	1 cut(s)	600
BsmAI	GTCTC	3 cut(s)	279, 493, 688
BsmBI	CGTCTC	1 cut(s)	493
BsmI	GAATGC	2 cut(s)	476, 788
BsnI	GGCC	1 cut(s)	327
BsoBI	CYCGRG	1 cut(s)	517
Bsp143I	GATC	6 cut(s)	64, 196, 280, 334, 700, 775
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	1 cut(s)	327
BspCNI	CTCAG	1 cut(s)	367
BspLI	GGNNCC	1 cut(s)	610
BspMAI	CTGCAG	1 cut(s)	832
BspPI	GGATC	4 cut(s)	72, 204, 275, 783
BsrI	ACTGG	2 cut(s)	114, 284
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	6 cut(s)	64, 196, 280, 334, 700, 775
BssNI	GRCGYC	1 cut(s)	486
Bst2UI	CCWGG	2 cut(s)	169, 719
Bst4CI	ACNGT	1 cut(s)	308
BstACI	GRCGYC	1 cut(s)	486
BstDEI	CTNAG	1 cut(s)	375
BstF5I	GGATG	5 cut(s)	130, 142, 345, 668, 674
BstKTI	GATC	6 cut(s)	67, 199, 283, 337, 703, 778
BstMAI	GTCTC	3 cut(s)	279, 493, 688
BstMBI	GATC	6 cut(s)	64, 196, 280, 334, 700, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	712, 736, 794
BstNI	CCWGG	2 cut(s)	169, 719
BstNSI	RCATGY	1 cut(s)	730
BstSCI	CCNGG	5 cut(s)	60, 167, 319, 600, 717
BstSFI	CTRYAG	1 cut(s)	828
BstV1I	GCAGC	1 cut(s)	772
BstV2I	GAAGAC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	327
BtsCI	GGATG	5 cut(s)	130, 142, 345, 668, 674
BtsIMutI	CAGTG	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	289
Csp6I	GTAC	6 cut(s)	107, 210, 224, 230, 259, 666
CviAII	CATG	3 cut(s)	205, 389, 727
CviQI	GTAC	6 cut(s)	107, 210, 224, 230, 259, 666
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	6 cut(s)	66, 198, 282, 336, 702, 777
DpnII	GATC	6 cut(s)	64, 196, 280, 334, 700, 775
EaeI	YGGCCR	1 cut(s)	325
Eco32I	GATATC	2 cut(s)	514, 809
Eco47I	GGWCC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	517
EcoRII	CCWGG	2 cut(s)	167, 717
EcoRV	GATATC	2 cut(s)	514, 809
Esp3I	CGTCTC	1 cut(s)	493
FaeI	CATG	3 cut(s)	208, 392, 730
FatI	CATG	3 cut(s)	204, 388, 726
FbaI	TGATCA	1 cut(s)	700
Fnu4HI	GCNGC	2 cut(s)	786, 831
FokI	GGATG	5 cut(s)	137, 149, 352, 655, 661
Fsp4HI	GCNGC	2 cut(s)	786, 831
FspBI	CTAG	1 cut(s)	794
GluI	GCNGC	2 cut(s)	786, 831
GsuI	CTGGAG	1 cut(s)	701
HaeIII	GGCC	1 cut(s)	327
HapII	CCGG	3 cut(s)	61, 320, 601
Hin1I	GRCGYC	1 cut(s)	486
Hin1II	CATG	3 cut(s)	208, 392, 730
HincII	GTYRAC	1 cut(s)	724
HindII	GTYRAC	1 cut(s)	724
HpaII	CCGG	3 cut(s)	61, 320, 601
HphI	GGTGA	2 cut(s)	50, 665
Hpy166II	GTNNAC	3 cut(s)	58, 107, 724
Hpy188I	TCNGA	3 cut(s)	339, 468, 780
Hpy188III	TCNNGA	9 cut(s)	45, 278, 295, 517, 519, 565, 743, 761, 812
Hpy8I	GTNNAC	3 cut(s)	58, 107, 724
HpyAV	CCTTC	4 cut(s)	16, 187, 350, 562
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	5 cut(s)	15, 204, 542, 788, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	712, 736, 794
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	1 cut(s)	486
Hsp92I	GRCGYC	1 cut(s)	486
Hsp92II	CATG	3 cut(s)	208, 392, 730
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	6 cut(s)	64, 196, 280, 334, 700, 775
LmnI	GCTCC	1 cut(s)	720
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	3 cut(s)	273, 330, 748
MaeI	CTAG	1 cut(s)	794
MaeII	ACGT	1 cut(s)	486
MalI	GATC	6 cut(s)	66, 198, 282, 336, 702, 777
MboI	GATC	6 cut(s)	64, 196, 280, 334, 700, 775
MboII	GAAGA	6 cut(s)	16, 125, 155, 260, 310, 448
MflI	RGATCY	1 cut(s)	196
MlsI	TGGCCA	1 cut(s)	327
MluCI	AATT	2 cut(s)	330, 363
MluNI	TGGCCA	1 cut(s)	327
MmeI	TCCRAC	1 cut(s)	609
Mox20I	TGGCCA	1 cut(s)	327
MscI	TGGCCA	1 cut(s)	327
MseI	TTAA	3 cut(s)	315, 395, 404
MslI	CAYNNNNRTG	2 cut(s)	269, 744
Msp20I	TGGCCA	1 cut(s)	327
MspI	CCGG	3 cut(s)	61, 320, 601
MspR9I	CCNGG	5 cut(s)	62, 169, 321, 602, 719
Mva1269I	GAATGC	2 cut(s)	476, 788
MvaI	CCWGG	2 cut(s)	169, 719
MwoI	GCNNNNNNNGC	3 cut(s)	712, 736, 794
NciI	CCSGG	3 cut(s)	62, 321, 602
NdeII	GATC	6 cut(s)	64, 196, 280, 334, 700, 775
NlaIII	CATG	3 cut(s)	208, 392, 730
NlaIV	GGNNCC	1 cut(s)	610
NspI	RCATGY	1 cut(s)	730
PaeR7I	CTCGAG	1 cut(s)	517
PctI	GAATGC	2 cut(s)	476, 788
PkrI	GCNGC	2 cut(s)	787, 832
Psp6I	CCWGG	2 cut(s)	167, 717
PspGI	CCWGG	2 cut(s)	167, 717
PspN4I	GGNNCC	1 cut(s)	610
PspPI	GGNCC	1 cut(s)	289
PstI	CTGCAG	1 cut(s)	832
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	6 cut(s)	108, 211, 225, 231, 260, 667
RsaNI	GTAC	6 cut(s)	107, 210, 224, 230, 259, 666
RseI	CAYNNNNRTG	2 cut(s)	269, 744
SaqAI	TTAA	3 cut(s)	315, 395, 404
SatI	GCNGC	2 cut(s)	786, 831
Sau3AI	GATC	6 cut(s)	64, 196, 280, 334, 700, 775
Sau96I	GGNCC	1 cut(s)	289
ScaI	AGTACT	1 cut(s)	211
ScrFI	CCNGG	5 cut(s)	62, 169, 321, 602, 719
SfaNI	GCATC	3 cut(s)	273, 330, 748
SfcI	CTRYAG	1 cut(s)	828
Sfr274I	CTCGAG	1 cut(s)	517
SinI	GGWCC	1 cut(s)	289
SlaI	CTCGAG	1 cut(s)	517
SmiMI	CAYNNNNRTG	2 cut(s)	269, 744
SmlI	CTYRAG	2 cut(s)	32, 517
SmoI	CTYRAG	2 cut(s)	32, 517
Sse9I	AATT	2 cut(s)	330, 363
SsiI	CCGC	1 cut(s)	262
SspMI	CTAG	1 cut(s)	794
StyD4I	CCNGG	5 cut(s)	60, 167, 319, 600, 717
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	3 cut(s)	177, 279, 518
TasI	AATT	2 cut(s)	330, 363
TatI	WGTACW	3 cut(s)	106, 209, 229
Tru1I	TTAA	3 cut(s)	315, 395, 404
Tru9I	TTAA	3 cut(s)	315, 395, 404
TscAI	CASTG	1 cut(s)	291
TseI	GCWGC	2 cut(s)	785, 830
TspDTI	ATGAA	5 cut(s)	17, 98, 198, 261, 762
TspGWI	ACGGA	1 cut(s)	781
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	289
XceI	RCATGY	1 cut(s)	730
XhoI	CTCGAG	1 cut(s)	517
XspI	CTAG	1 cut(s)	794
ZraI	GACGTC	1 cut(s)	487
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.