Rh5BG112300

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
10506882 .. 10518061
11180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG112300.1

Sequence Viewer

Length: 1575 bp
ATGTCTAATCGTAATCACCCAGTCGAGAGCGTTGCCACACATATTTTGTGGGAATCTACCATAGCATTGGAGAATGAGCAGAACAAAATTAATTCCAAATATAAAGCTCTAGAAACGTGGATGGTAAGAAATGGTATCCCTGAAGAAGTGAAAACAGGAGCAGTGAAAATCATAACAGAAAAGAAAGTAGTGGAAAAAAGCTACGATGATGATGTGGACTTGGTTTTTGTTTTCAATGCTCTTTCTGGGGATGAGCATGACGAATTGAAAATCAGGCATGGTTTGATGCATTATTTGTTCCAAAATGCCAAAGCACTCCTGCTTAAATATATCTTTCAATCCCCGGGTAGCCTGGATCTCGGGAGTGTCAGCGCATTTTTCGTGCCACTAGTCTACGAGGAGAATAGCTACGTGGTTAAAGAAGGAAAGCCAATGCTCATCATCACAGAAGGCGTAGTTGTCTGTACAGACAACACCGGAGCTAATGTTGCTCGTTTTGAGAAAGGTGAAGTTTATGTAGAAGAGCTTCTGGATAGCTACCTCCCTAATATTCCTAAAGATGCCACCAAGTCACTCAAGTGCGAAACAAAAGTAGAAGCCTTCGGTATTCTTCCAGTGTTCTATGACTTGTTGCTTAGAAAAATGAACCGTTCATGGGGAAGGACAAATAGAAAATCGAATCTAAACGAGGCATACAAGAAGTTGACAACTACAAGATCAGCGAAGTTAGAGGAACGGCAGAAGAAGATAATTGAGTGGCTGTCAAGAAACACTATCCCAGACGGTCTGCAGACATTGGTCATGGAACACATAAACGCTAATAATGCACTGGAAAAGTACTGGGATGCTGAGGTGGATGTGAAGTATCTGTTCTCTATTGGTCTTTCCTGGGATATCGAATATCGTATAAAGAAGCAGATCTGCATCAATTCTCTGAGTAAGGTTCCTGTACTTGAAGGCGTTAATGAAGACGTGTTGAGTCGCATCTGTATGTCTCTCGAGCCGCTGGTACTCCAGCAGCATAGCTGCATCTTTTATCCACTTAGCGCAATTGATCGGATGCTCATCGTTGTAGAAGGTGAAATTACAGTGACTGAGACGACTTACAATGAAGAAAGTTTAGAAACGAAGAGAGGCGATGTTAGAAAGATAAAGAAAAGCGATGTCATTGGGGAAGAGCTTCTGACCTGGGCATTCCCCATCGTCTCTGAGTCGTCCGAATCTAATCCTGCTATCTTGGAGAAATATGTAGAATGTCCTACAAAAGTAGAAGCCTTTGCTCTCACAATGGAAGGGTTGGAAAGTGTGGTCGCCTACTATAGACATGGAATCAACAAGTTTGAGCAGTTGGAGAAGGGCAGAGATGGTGTGGCCGATACTGAGGGTGCATCCAGATCCACTACTACTATTGAGCAGAGACTTGACAAGCTTATCCAGCTCCAGAGTGACATGGTTCAACAGCAGGGAATAATTCGTGATGAAATGGCTAATCAGGGACGGAGATTGGATGAGATGGCTGCATTCTTATCGAAATTGGGATATCCTGCAGGCACATCTCCTCCTCCTGCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

524

Amino Acids

59.34

Weight (kDa)

5.27

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 393
AciI CCGC 1 cut(s) 1004
AclWI GGATC 2 cut(s) 363, 1389
AcoI YGGCCR 1 cut(s) 1371
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 4 cut(s) 466, 839, 951, 1011
AfiI CCNNNNNNNGG 1 cut(s) 655
AflIII ACRYGT 1 cut(s) 972
AgsI TTSAA 5 cut(s) 235, 268, 338, 956, 1457
AhlI ACTAGT 1 cut(s) 388
AjiI CACGTC 1 cut(s) 973
AjnI CCWGG 3 cut(s) 351, 887, 1187
AleI CACNNNNGTG 1 cut(s) 577
Alw26I GTCTC 4 cut(s) 999, 1091, 1210, 1411
AlwI GGATC 2 cut(s) 363, 1389
AlwNI CAGNNNCTG 1 cut(s) 1094
Ama87I CYCGRG 3 cut(s) 343, 359, 998
AoxI GGCC 1 cut(s) 1371
ApeKI GCWGC 4 cut(s) 1018, 1026, 1517, 1568
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AseI ATTAAT 1 cut(s) 90
Asp700I GAANNNNTTC 2 cut(s) 525, 1179
AspLEI GCGC 2 cut(s) 374, 1049
AsuC2I CCSGG 2 cut(s) 344, 345
AsuHPI GGTGA 3 cut(s) 8, 518, 1091
AvaI CYCGRG 3 cut(s) 343, 359, 998
BarI GAAGNNNNNNTAC 2 cut(s) 510, 542
BbsI GAAGAC 1 cut(s) 975
BbvCI CCTCAGC 1 cut(s) 849
BbvI GCAGC 3 cut(s) 1013, 1030, 1504
BccI CCATC 4 cut(s) 115, 1208, 1358, 1507
BceAI ACGGC 1 cut(s) 752
BcgI CGANNNNNNTGC 4 cut(s) 14, 48, 1509, 1543
BciT130I CCWGG 3 cut(s) 353, 889, 1189
BciVI GTATCC 1 cut(s) 146
BcnI CCSGG 2 cut(s) 344, 345
BcoDI GTCTC 4 cut(s) 999, 1091, 1210, 1411
BcuI ACTAGT 1 cut(s) 388
BfaI CTAG 2 cut(s) 110, 389
BfmI CTRYAG 4 cut(s) 788, 1318, 1545, 1566
BfuI GTATCC 1 cut(s) 146
BglII AGATCT 1 cut(s) 918
BisI GCNGC 5 cut(s) 1004, 1019, 1027, 1518, 1569
BlsI GCNGC 5 cut(s) 1005, 1020, 1028, 1519, 1570
BmcAI AGTACT 1 cut(s) 839
Bme1390I CCNGG 5 cut(s) 344, 345, 353, 889, 1189
BmeT110I CYCGRG 3 cut(s) 343, 359, 998
BmgBI CACGTC 1 cut(s) 973
BmiI GGNNCC 1 cut(s) 945
BmrFI CCNGG 5 cut(s) 344, 345, 353, 889, 1189
BmrI ACTGGG 2 cut(s) 14, 850
BmsI GCATC 8 cut(s) 276, 550, 835, 933, 993, 1038, 1050, 1397
BmuI ACTGGG 2 cut(s) 14, 850
BoxI GACNNNNGTC 1 cut(s) 797
BpiI GAAGAC 1 cut(s) 975
BpmI CTGGAG 2 cut(s) 998, 1424
Bpu10I CCTNAGC 1 cut(s) 849
BpuEI CTTGAG 1 cut(s) 560
BpuMI CCSGG 2 cut(s) 344, 345
BsaAI YACGTR 1 cut(s) 412
BsaBI GATNNNNATC 2 cut(s) 923, 1064
BsaJI CCNNGG 4 cut(s) 342, 343, 888, 1188
BsaWI WCCGGW 1 cut(s) 476
BsaXI ACNNNNNCTCC 4 cut(s) 471, 501, 1543, 1573
Bsc4I CCNNNNNNNGG 1 cut(s) 655
Bse1I ACTGG 4 cut(s) 20, 614, 834, 845
Bse8I GATNNNNATC 2 cut(s) 923, 1064
BseBI CCWGG 3 cut(s) 353, 889, 1189
BseDI CCNNGG 4 cut(s) 342, 343, 888, 1188
BseGI GGATG 7 cut(s) 126, 256, 850, 862, 1065, 1388, 1513
BseJI GATNNNNATC 2 cut(s) 923, 1064
BseLI CCNNNNNNNGG 1 cut(s) 655
BseMII CTCAG 5 cut(s) 840, 926, 1086, 1200, 1371
BseNI ACTGG 4 cut(s) 20, 614, 834, 845
BseRI GAGGAG 3 cut(s) 413, 1548, 1551
BseXI GCAGC 3 cut(s) 1013, 1030, 1504
BshFI GGCC 1 cut(s) 1373
BsiHKCI CYCGRG 3 cut(s) 343, 359, 998
BsiSI CCGG 2 cut(s) 344, 477
BslFI GGGAC 1 cut(s) 1509
BslI CCNNNNNNNGG 1 cut(s) 655
BsmAI GTCTC 4 cut(s) 999, 1091, 1210, 1411
BsmBI CGTCTC 2 cut(s) 1091, 1210
BsmFI GGGAC 1 cut(s) 1509
BsmI GAATGC 2 cut(s) 1193, 1520
BsnI GGCC 1 cut(s) 1373
BsoBI CYCGRG 3 cut(s) 343, 359, 998
Bsp1407I TGTACA 1 cut(s) 464
Bsp143I GATC 5 cut(s) 355, 716, 918, 1054, 1394
BspACI CCGC 1 cut(s) 1004
BspANI GGCC 1 cut(s) 1373
BspCNI CTCAG 5 cut(s) 841, 927, 1087, 1201, 1372
BspLI GGNNCC 1 cut(s) 945
BspMAI CTGCAG 3 cut(s) 792, 1549, 1570
BspPI GGATC 2 cut(s) 363, 1389
BspQI GCTCTTC 2 cut(s) 516, 1170
BsrGI TGTACA 1 cut(s) 464
BsrI ACTGG 4 cut(s) 20, 614, 834, 845
BssECI CCNNGG 4 cut(s) 342, 343, 888, 1188
BssMI GATC 5 cut(s) 355, 716, 918, 1054, 1394
Bst2UI CCWGG 3 cut(s) 353, 889, 1189
Bst4CI ACNGT 3 cut(s) 650, 785, 1090
Bst6I CTCTTC 3 cut(s) 516, 1124, 1170
BstAUI TGTACA 1 cut(s) 464
BstBAI YACGTR 1 cut(s) 412
BstC8I GCNNGC 1 cut(s) 1549
BstDEI CTNAG 7 cut(s) 635, 849, 935, 1043, 1095, 1209, 1380
BstF5I GGATG 7 cut(s) 126, 256, 850, 862, 1065, 1388, 1513
BstHHI GCGC 2 cut(s) 374, 1049
BstKTI GATC 5 cut(s) 358, 719, 921, 1057, 1397
BstMAI GTCTC 4 cut(s) 999, 1091, 1210, 1411
BstMBI GATC 5 cut(s) 355, 716, 918, 1054, 1394
BstMWI GCNNNNNNNGC 3 cut(s) 488, 824, 1435
BstNI CCWGG 3 cut(s) 353, 889, 1189
BstPAI GACNNNNGTC 1 cut(s) 797
BstSCI CCNGG 5 cut(s) 342, 343, 351, 887, 1187
BstSFI CTRYAG 4 cut(s) 788, 1318, 1545, 1566
BstV1I GCAGC 3 cut(s) 1013, 1030, 1504
BstV2I GAAGAC 1 cut(s) 975
BstX2I RGATCY 3 cut(s) 355, 918, 1394
BstXI CCANNNNNNTGG 1 cut(s) 67
BstYI RGATCY 3 cut(s) 355, 918, 1394
BsuI GTATCC 1 cut(s) 146
BsuRI GGCC 1 cut(s) 1373
BtgZI GCGATG 2 cut(s) 1152, 1176
BtrI CACGTC 1 cut(s) 973
BtsCI GGATG 7 cut(s) 126, 256, 850, 862, 1065, 1388, 1513
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 4 cut(s) 168, 621, 827, 1095
Cac8I GCNNGC 1 cut(s) 1549
CaiI CAGNNNCTG 1 cut(s) 1094
CfoI GCGC 2 cut(s) 374, 1049
Cfr9I CCCGGG 1 cut(s) 343
Csp6I GTAC 4 cut(s) 465, 838, 950, 1010
CviAII CATG 6 cut(s) 257, 278, 654, 802, 1325, 1450
CviQI GTAC 4 cut(s) 465, 838, 950, 1010
DdeI CTNAG 7 cut(s) 635, 849, 935, 1043, 1095, 1209, 1380
DpnI GATC 5 cut(s) 357, 718, 920, 1056, 1396
DpnII GATC 5 cut(s) 355, 716, 918, 1054, 1394
EaeI YGGCCR 1 cut(s) 1371
Eam1104I CTCTTC 3 cut(s) 516, 1124, 1170
EarI CTCTTC 3 cut(s) 516, 1124, 1170
Eco32I GATATC 2 cut(s) 895, 1541
Eco57I CTGAAG 1 cut(s) 162
Eco88I CYCGRG 3 cut(s) 343, 359, 998
EcoRII CCWGG 3 cut(s) 351, 887, 1187
EcoRV GATATC 2 cut(s) 895, 1541
EcoT22I ATGCAT 1 cut(s) 291
Esp3I CGTCTC 2 cut(s) 1091, 1210
FaeI CATG 6 cut(s) 260, 281, 657, 805, 1328, 1453
FaqI GGGAC 1 cut(s) 1509
FatI CATG 6 cut(s) 256, 277, 653, 801, 1324, 1449
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 5 cut(s) 1004, 1019, 1027, 1518, 1569
FokI GGATG 7 cut(s) 133, 263, 857, 869, 1072, 1375, 1520
Fsp4HI GCNGC 5 cut(s) 1004, 1019, 1027, 1518, 1569
FspBI CTAG 2 cut(s) 110, 389
GlaI GCGC 2 cut(s) 373, 1048
GluI GCNGC 5 cut(s) 1004, 1019, 1027, 1518, 1569
GsuI CTGGAG 2 cut(s) 998, 1424
HaeIII GGCC 1 cut(s) 1373
HapII CCGG 2 cut(s) 344, 477
HhaI GCGC 2 cut(s) 374, 1049
Hin1II CATG 6 cut(s) 260, 281, 657, 805, 1328, 1453
Hin6I GCGC 2 cut(s) 372, 1047
HinP1I GCGC 2 cut(s) 372, 1047
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HindIII AAGCTT 1 cut(s) 1427
HinfI GANTC 6 cut(s) 53, 679, 979, 1211, 1220, 1329
HpaII CCGG 2 cut(s) 344, 477
HphI GGTGA 3 cut(s) 8, 518, 1091
Hpy166II GTNNAC 3 cut(s) 217, 394, 705
Hpy188I TCNGA 5 cut(s) 936, 1059, 1185, 1210, 1219
Hpy188III TCNNGA 9 cut(s) 25, 110, 361, 530, 765, 998, 1392, 1441, 1475
Hpy8I GTNNAC 3 cut(s) 217, 394, 705
HpyAV CCTTC 8 cut(s) 416, 443, 610, 654, 950, 1070, 1286, 1348
HpyCH4III ACNGT 3 cut(s) 650, 785, 1090
HpyCH4IV ACGT 3 cut(s) 116, 411, 972
HpyCH4V TGCA 9 cut(s) 289, 790, 827, 924, 1029, 1388, 1520, 1547, 1568
HpyF10VI GCNNNNNNNGC 3 cut(s) 488, 824, 1435
HpyF3I CTNAG 7 cut(s) 635, 849, 935, 1043, 1095, 1209, 1380
HpySE526I ACGT 3 cut(s) 116, 411, 972
Hsp92II CATG 6 cut(s) 260, 281, 657, 805, 1328, 1453
HspAI GCGC 2 cut(s) 372, 1047
Kzo9I GATC 5 cut(s) 355, 716, 918, 1054, 1394
LguI GCTCTTC 2 cut(s) 516, 1170
LmnI GCTCC 3 cut(s) 158, 479, 1443
Lsp1109I GCAGC 3 cut(s) 1013, 1030, 1504
LweI GCATC 8 cut(s) 276, 550, 835, 933, 993, 1038, 1050, 1397
MaeI CTAG 2 cut(s) 110, 389
MaeII ACGT 3 cut(s) 116, 411, 972
MaeIII GTNAC 3 cut(s) 570, 1090, 1445
MalI GATC 5 cut(s) 357, 718, 920, 1056, 1396
MboI GATC 5 cut(s) 355, 716, 918, 1054, 1394
MboII GAAGA 9 cut(s) 155, 533, 602, 754, 757, 980, 1124, 1141, 1187
MfeI CAATTG 1 cut(s) 1050
MflI RGATCY 3 cut(s) 355, 918, 1394
MluCI AATT 9 cut(s) 87, 91, 263, 750, 928, 1050, 1083, 1470, 1532
MlyI GAGTC 2 cut(s) 988, 1220
MmeI TCCRAC 2 cut(s) 1278, 1329
MnlI CCTC 9 cut(s) 391, 551, 682, 724, 844, 1127, 1375, 1569, 1572
Mph1103I ATGCAT 1 cut(s) 291
MroXI GAANNNNTTC 2 cut(s) 525, 1179
MseI TTAA 4 cut(s) 90, 324, 417, 963
MslI CAYNNNNRTG 2 cut(s) 577, 989
MspA1I CMGCKG 1 cut(s) 1006
MspI CCGG 2 cut(s) 344, 477
MspR9I CCNGG 5 cut(s) 344, 345, 353, 889, 1189
MunI CAATTG 1 cut(s) 1050
Mva1269I GAATGC 2 cut(s) 1193, 1520
MvaI CCWGG 3 cut(s) 353, 889, 1189
MwoI GCNNNNNNNGC 3 cut(s) 488, 824, 1435
NciI CCSGG 2 cut(s) 344, 345
NdeII GATC 5 cut(s) 355, 716, 918, 1054, 1394
NlaIII CATG 6 cut(s) 260, 281, 657, 805, 1328, 1453
NlaIV GGNNCC 1 cut(s) 945
NmuCI GTSAC 3 cut(s) 570, 1090, 1445
NsiI ATGCAT 1 cut(s) 291
OliI CACNNNNGTG 1 cut(s) 577
PaeR7I CTCGAG 1 cut(s) 998
PciSI GCTCTTC 2 cut(s) 516, 1170
PctI GAATGC 2 cut(s) 1193, 1520
PdmI GAANNNNTTC 2 cut(s) 525, 1179
PfeI GAWTC 4 cut(s) 53, 679, 1220, 1329
PkrI GCNGC 5 cut(s) 1005, 1020, 1028, 1519, 1570
PleI GAGTC 2 cut(s) 987, 1219
PpsI GAGTC 2 cut(s) 987, 1219
Ppu21I YACGTR 1 cut(s) 412
PshAI GACNNNNGTC 1 cut(s) 797
PshBI ATTAAT 1 cut(s) 90
Psp6I CCWGG 3 cut(s) 351, 887, 1187
PspGI CCWGG 3 cut(s) 351, 887, 1187
PspN4I GGNNCC 1 cut(s) 945
PstI CTGCAG 3 cut(s) 792, 1549, 1570
PstNI CAGNNNCTG 1 cut(s) 1094
PsuI RGATCY 3 cut(s) 355, 918, 1394
RsaI GTAC 4 cut(s) 466, 839, 951, 1011
RsaNI GTAC 4 cut(s) 465, 838, 950, 1010
RseI CAYNNNNRTG 2 cut(s) 577, 989
SapI GCTCTTC 2 cut(s) 516, 1170
SaqAI TTAA 4 cut(s) 90, 324, 417, 963
SatI GCNGC 5 cut(s) 1004, 1019, 1027, 1518, 1569
Sau3AI GATC 5 cut(s) 355, 716, 918, 1054, 1394
SbfI CCTGCAGG 1 cut(s) 1549
ScaI AGTACT 1 cut(s) 839
SchI GAGTC 2 cut(s) 988, 1220
ScrFI CCNGG 5 cut(s) 344, 345, 353, 889, 1189
SdaI CCTGCAGG 1 cut(s) 1549
SfaNI GCATC 8 cut(s) 276, 550, 835, 933, 993, 1038, 1050, 1397
SfcI CTRYAG 4 cut(s) 788, 1318, 1545, 1566
Sfr274I CTCGAG 1 cut(s) 998
SlaI CTCGAG 1 cut(s) 998
SmaI CCCGGG 1 cut(s) 345
SmiMI CAYNNNNRTG 2 cut(s) 577, 989
SmlI CTYRAG 2 cut(s) 575, 998
SmoI CTYRAG 2 cut(s) 575, 998
SpeI ACTAGT 1 cut(s) 388
Sse8387I CCTGCAGG 1 cut(s) 1549
Sse9I AATT 9 cut(s) 87, 91, 263, 750, 928, 1050, 1083, 1470, 1532
SsiI CCGC 1 cut(s) 1004
SspI AATATT 1 cut(s) 550
SspMI CTAG 2 cut(s) 110, 389
StyD4I CCNGG 5 cut(s) 342, 343, 351, 887, 1187
TaaI ACNGT 3 cut(s) 650, 785, 1090
TaiI ACGT 3 cut(s) 119, 414, 975
TaqI TCGA 5 cut(s) 24, 677, 897, 999, 1529
TasI AATT 9 cut(s) 87, 91, 263, 750, 928, 1050, 1083, 1470, 1532
TatI WGTACW 3 cut(s) 464, 837, 949
TauI GCSGC 1 cut(s) 1006
TfiI GAWTC 4 cut(s) 53, 679, 1220, 1329
Tru1I TTAA 4 cut(s) 90, 324, 417, 963
Tru9I TTAA 4 cut(s) 90, 324, 417, 963
TscAI CASTG 4 cut(s) 168, 621, 834, 1095
TseFI GTSAC 3 cut(s) 570, 1090, 1445
TseI GCWGC 4 cut(s) 1018, 1026, 1517, 1568
Tsp45I GTSAC 3 cut(s) 570, 1090, 1445
TspDTI ATGAA 5 cut(s) 642, 659, 981, 1125, 1494
TspGWI ACGGA 1 cut(s) 1513
TspMI CCCGGG 1 cut(s) 343
TspRI CASTG 4 cut(s) 168, 621, 834, 1095
VspI ATTAAT 1 cut(s) 90
XbaI TCTAGA 1 cut(s) 109
XhoI CTCGAG 1 cut(s) 998
XmaI CCCGGG 1 cut(s) 343
XmiI GTMKAC 1 cut(s) 393
XmnI GAANNNNTTC 2 cut(s) 525, 1179
XspI CTAG 2 cut(s) 110, 389
ZrmI AGTACT 1 cut(s) 839
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.