Rh5BG112800

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
10571166 .. 10575992
4827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG112800.1

Sequence Viewer

Length: 1362 bp
ATGAATGATATCCTCACAGCCGGTCACAATAATAATAGTCCTTTTCAGAATGAGAGCGTCGGGACATATATTCTTTGGGAATCTACAAAAGCATTGGAGGTTCAGGAGGAGAAAGTTAAGGCGAAATATGAAGATCTACATTCGTGGATGTTAGATAATGCTATCCCCGGAAAAATCAAGATAGAAGTGGTGAAAATCATAAAGTATCAGAAAATATTTGAAAGAAACTACGCCACTGGTGTAGATGTTGATGTGGACTTAGTTTTTGTATTCAATGCTATCACTGTGAATGGCAATCAACCCGTGGCAAGTTATTTGAAGGAGCATTTCTGCGCAAATGCCCTCATGAAAGTATCCATCCTTCAAGACGTGGGAGAAGATGAATTCAACTTGGTATTAAAGTTTTCCATCCCGGTGATCTACGAGGAGAATAGCTACGTAGTTCGAGCAGGAGAGCCGGATGACAAAATGCTCATCATCACACAAGGCGTGCTAATTGTATATGTGGACAACACCGCAGCAGGCTCTTCATCAATTATCATCCCCAAGTCACGTTTTGAGAAAGGTGAAGTTTATGGAGAAGAGCTTTTGAACGGCCGTATTCCTATATCGACCCGAGATGTCAAATGCCAAACAAAAGTAGAAGCCTTCGCTCTCACAAGTCGTGGGTTGAAATTTGTAGTAACCATGCTGCGGCAGACACGTACGACTTCAACATTGTTCTATGATCCAGAACTAGTAAACAAGGTACCTGTACTTGATGGTGTTGATGAAGATGTGTTGTACCGCATCTGTATGTCTCTCGATCCAGTGGTCCTCCCGAAGAATAACTGTGTCGTTAAACCAGGTGGCCAAATTGATCGGATGCTCATCATTGTAGAAGGCGAAATTACTTTGACTGAGCAGACTTTCCATGTTTTAAGTAGATTAAGAAAGAGAGGCAACATTGAAAGAATACTGAAGAAAGGCGATTTCTTTGGGGAGGAACTTCTGACTTGGGCATTCCCTGACGTCTCTATTTCCAAATATAAACCTGATATCTCGAGAAAATATGTTGATTGTTGTGCAAAAGTAGAAGCCTTTGCTCTCACGAAGGAGGGTGTGGAAAGTGTAGTCGCCTACTACCGGGAGGGAACCAACATTTTTGAGGAGTTGGAGAATGGTAAATATGGTGTGGCTGATACTAATGGTACATCCACATCCCCAACTATTGAGCAGAGACTTGATCAGCTTATTCAGCTCCAGGTTGACATGCTTCAACAGCATCGTGATGAAATGGCTAATCAGGGACGGAGATTGGATCAGATAGCTGCATTCCTAGCCAGATTGGGATATCCAGACACACCTCCTCCTGCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

453

Amino Acids

51.0

Weight (kDa)

5.12

Isoelectric Point (pI)

30.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1014
Acc16I TGCGCA 1 cut(s) 334
Acc65I GGTACC 1 cut(s) 748
AccB1I GGYRCC 1 cut(s) 748
AciI CCGC 3 cut(s) 516, 694, 787
AclWI GGATC 3 cut(s) 722, 800, 1308
AcoI YGGCCR 2 cut(s) 595, 850
AcsI RAATTY 2 cut(s) 383, 674
AcuI CTGAAG 1 cut(s) 980
AcyI GRCGYC 1 cut(s) 1011
AfaI GTAC 5 cut(s) 706, 750, 756, 785, 1192
AfiI CCNNNNNNNGG 2 cut(s) 693, 1125
AflIII ACRYGT 1 cut(s) 701
AhlI ACTAGT 1 cut(s) 736
AjiI CACGTC 1 cut(s) 370
AjnI CCWGG 2 cut(s) 844, 1242
AluBI AGCT 6 cut(s) 435, 586, 1231, 1240, 1310, 1358
AluI AGCT 6 cut(s) 435, 586, 1231, 1240, 1310, 1358
Alw26I GTCTC 3 cut(s) 804, 1018, 1213
AlwI GGATC 3 cut(s) 722, 800, 1308
Ama87I CYCGRG 2 cut(s) 615, 1042
AoxI GGCC 2 cut(s) 595, 850
ApeKI GCWGC 4 cut(s) 518, 691, 1310, 1355
ApoI RAATTY 2 cut(s) 383, 674
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
Asp718I GGTACC 1 cut(s) 748
AspLEI GCGC 1 cut(s) 335
AspS9I GGNCC 1 cut(s) 814
AsuC2I CCSGG 3 cut(s) 168, 413, 1127
AsuHPI GGTGA 3 cut(s) 202, 427, 578
AvaI CYCGRG 2 cut(s) 615, 1042
AvaII GGWCC 1 cut(s) 814
BalI TGGCCA 1 cut(s) 852
BanI GGYRCC 1 cut(s) 748
BarI GAAGNNNNNNTAC 2 cut(s) 345, 377
BbvI GCAGC 3 cut(s) 530, 678, 1297
BccI CCATC 3 cut(s) 365, 416, 755
BceAI ACGGC 2 cut(s) 582, 610
BciT130I CCWGG 2 cut(s) 846, 1244
BciVI GTATCC 1 cut(s) 364
BclI TGATCA 1 cut(s) 1225
BcnI CCSGG 3 cut(s) 168, 413, 1127
BcoDI GTCTC 3 cut(s) 804, 1018, 1213
BcuI ACTAGT 1 cut(s) 736
BfaI CTAG 2 cut(s) 737, 1319
BfmI CTRYAG 1 cut(s) 1353
BfuI GTATCC 1 cut(s) 364
BglII AGATCT 1 cut(s) 133
BisI GCNGC 5 cut(s) 519, 692, 695, 1311, 1356
BlsI GCNGC 5 cut(s) 520, 693, 696, 1312, 1357
Bme1390I CCNGG 5 cut(s) 168, 413, 846, 1127, 1244
Bme18I GGWCC 1 cut(s) 814
BmeT110I CYCGRG 2 cut(s) 615, 1042
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 814
BmiI GGNNCC 2 cut(s) 750, 1135
BmrFI CCNGG 5 cut(s) 168, 413, 846, 1127, 1244
BmsI GCATC 3 cut(s) 798, 855, 1273
BpmI CTGGAG 1 cut(s) 1226
BpuMI CCSGG 3 cut(s) 168, 413, 1127
BsaAI YACGTR 2 cut(s) 439, 704
BsaBI GATNNNNATC 1 cut(s) 869
BsaHI GRCGYC 1 cut(s) 1011
BsaJI CCNNGG 2 cut(s) 166, 303
BsaXI ACNNNNNCTCC 1 cut(s) 1333
Bsc4I CCNNNNNNNGG 2 cut(s) 693, 1125
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 241, 809
Bse8I GATNNNNATC 1 cut(s) 869
BseBI CCWGG 2 cut(s) 846, 1244
BseDI CCNNGG 2 cut(s) 166, 303
BseGI GGATG 8 cut(s) 153, 357, 408, 466, 540, 870, 1193, 1199
BseJI GATNNNNATC 1 cut(s) 869
BseLI CCNNNNNNNGG 2 cut(s) 693, 1125
BseMII CTCAG 1 cut(s) 891
BseNI ACTGG 2 cut(s) 241, 809
BseRI GAGGAG 4 cut(s) 122, 440, 1163, 1338
BseX3I CGGCCG 1 cut(s) 595
BseXI GCAGC 3 cut(s) 530, 678, 1297
Bsh1285I CGRYCG 1 cut(s) 598
BshFI GGCC 2 cut(s) 597, 852
BshNI GGYRCC 1 cut(s) 748
BsiEI CGRYCG 1 cut(s) 598
BsiHKCI CYCGRG 2 cut(s) 615, 1042
BsiSI CCGG 5 cut(s) 21, 168, 413, 458, 1126
BsiWI CGTACG 1 cut(s) 704
BslFI GGGAC 2 cut(s) 76, 1302
BslI CCNNNNNNNGG 2 cut(s) 693, 1125
BsmAI GTCTC 3 cut(s) 804, 1018, 1213
BsmBI CGTCTC 1 cut(s) 1018
BsmFI GGGAC 2 cut(s) 76, 1302
BsmI GAATGC 2 cut(s) 1001, 1313
BsnI GGCC 2 cut(s) 597, 852
BsoBI CYCGRG 2 cut(s) 615, 1042
Bsp143I GATC 7 cut(s) 133, 417, 727, 805, 859, 1225, 1300
BspACI CCGC 3 cut(s) 516, 694, 787
BspANI GGCC 2 cut(s) 597, 852
BspCNI CTCAG 1 cut(s) 892
BspHI TCATGA 1 cut(s) 345
BspLI GGNNCC 2 cut(s) 750, 1135
BspMAI CTGCAG 1 cut(s) 1357
BspPI GGATC 3 cut(s) 722, 800, 1308
BspQI GCTCTTC 2 cut(s) 532, 576
BspT107I GGYRCC 1 cut(s) 748
BsrFI RCCGGY 1 cut(s) 20
BsrI ACTGG 2 cut(s) 241, 809
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 166, 303
BssMI GATC 7 cut(s) 133, 417, 727, 805, 859, 1225, 1300
BssNI GRCGYC 1 cut(s) 1011
Bst2UI CCWGG 2 cut(s) 846, 1244
Bst4CI ACNGT 2 cut(s) 286, 833
Bst6I CTCTTC 2 cut(s) 532, 576
BstACI GRCGYC 1 cut(s) 1011
BstBAI YACGTR 2 cut(s) 439, 704
BstC8I GCNNGC 2 cut(s) 491, 523
BstDEI CTNAG 2 cut(s) 259, 900
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 8 cut(s) 153, 357, 408, 466, 540, 870, 1193, 1199
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 7 cut(s) 136, 420, 730, 808, 862, 1228, 1303
BstMAI GTCTC 3 cut(s) 804, 1018, 1213
BstMBI GATC 7 cut(s) 133, 417, 727, 805, 859, 1225, 1300
BstMCI CGRYCG 1 cut(s) 598
BstMWI GCNNNNNNNGC 3 cut(s) 1237, 1261, 1319
BstNI CCWGG 2 cut(s) 846, 1244
BstNSI RCATGY 1 cut(s) 1255
BstSCI CCNGG 5 cut(s) 166, 411, 844, 1125, 1242
BstSFI CTRYAG 1 cut(s) 1353
BstSNI TACGTA 1 cut(s) 439
BstV1I GCAGC 3 cut(s) 530, 678, 1297
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BstZI CGGCCG 1 cut(s) 595
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 2 cut(s) 597, 852
BtgI CCRYGG 1 cut(s) 303
BtrI CACGTC 1 cut(s) 370
BtsCI GGATG 8 cut(s) 153, 357, 408, 466, 540, 870, 1193, 1199
BtsIMutI CAGTG 3 cut(s) 234, 282, 816
Cac8I GCNNGC 2 cut(s) 491, 523
CciI TCATGA 1 cut(s) 345
CfoI GCGC 1 cut(s) 335
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 814
CseI GACGC 1 cut(s) 46
CsiI ACCWGGT 1 cut(s) 844
Csp6I GTAC 5 cut(s) 705, 749, 755, 784, 1191
CviAII CATG 4 cut(s) 346, 688, 914, 1252
CviQI GTAC 5 cut(s) 705, 749, 755, 784, 1191
DdeI CTNAG 2 cut(s) 259, 900
DpnI GATC 7 cut(s) 135, 419, 729, 807, 861, 1227, 1302
DpnII GATC 7 cut(s) 133, 417, 727, 805, 859, 1225, 1300
EaeI YGGCCR 2 cut(s) 595, 850
EagI CGGCCG 1 cut(s) 595
Eam1104I CTCTTC 2 cut(s) 532, 576
EarI CTCTTC 2 cut(s) 532, 576
EclXI CGGCCG 1 cut(s) 595
Eco105I TACGTA 1 cut(s) 439
Eco32I GATATC 3 cut(s) 10, 1039, 1334
Eco47I GGWCC 1 cut(s) 814
Eco52I CGGCCG 1 cut(s) 595
Eco57I CTGAAG 1 cut(s) 980
Eco88I CYCGRG 2 cut(s) 615, 1042
EcoRI GAATTC 1 cut(s) 383
EcoRII CCWGG 2 cut(s) 844, 1242
EcoRV GATATC 3 cut(s) 10, 1039, 1334
Esp3I CGTCTC 1 cut(s) 1018
FaeI CATG 4 cut(s) 349, 691, 917, 1255
FaqI GGGAC 2 cut(s) 76, 1302
FatI CATG 4 cut(s) 345, 687, 913, 1251
FbaI TGATCA 1 cut(s) 1225
Fnu4HI GCNGC 5 cut(s) 519, 692, 695, 1311, 1356
FokI GGATG 8 cut(s) 160, 344, 395, 473, 527, 877, 1180, 1186
Fsp4HI GCNGC 5 cut(s) 519, 692, 695, 1311, 1356
FspBI CTAG 2 cut(s) 737, 1319
FspI TGCGCA 1 cut(s) 334
GlaI GCGC 1 cut(s) 334
GluI GCNGC 5 cut(s) 519, 692, 695, 1311, 1356
GsuI CTGGAG 1 cut(s) 1226
HaeIII GGCC 2 cut(s) 597, 852
HapII CCGG 5 cut(s) 21, 168, 413, 458, 1126
HgaI GACGC 1 cut(s) 46
HhaI GCGC 1 cut(s) 335
Hin1I GRCGYC 1 cut(s) 1011
Hin1II CATG 4 cut(s) 349, 691, 917, 1255
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HincII GTYRAC 1 cut(s) 1249
HindII GTYRAC 1 cut(s) 1249
HinfI GANTC 1 cut(s) 80
HpaII CCGG 5 cut(s) 21, 168, 413, 458, 1126
HphI GGTGA 3 cut(s) 202, 427, 578
Hpy166II GTNNAC 4 cut(s) 256, 508, 742, 1249
Hpy188I TCNGA 5 cut(s) 48, 210, 864, 993, 1305
Hpy8I GTNNAC 4 cut(s) 256, 508, 742, 1249
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 5 cut(s) 313, 371, 658, 875, 1087
HpyCH4III ACNGT 2 cut(s) 286, 833
HpyCH4IV ACGT 5 cut(s) 369, 438, 553, 703, 1011
HpyCH4V TGCA 3 cut(s) 1067, 1313, 1355
HpyF10VI GCNNNNNNNGC 3 cut(s) 1237, 1261, 1319
HpyF3I CTNAG 2 cut(s) 259, 900
HpySE526I ACGT 5 cut(s) 369, 438, 553, 703, 1011
Hsp92I GRCGYC 1 cut(s) 1011
Hsp92II CATG 4 cut(s) 349, 691, 917, 1255
HspAI GCGC 1 cut(s) 333
KpnI GGTACC 1 cut(s) 752
Ksp22I TGATCA 1 cut(s) 1225
Kzo9I GATC 7 cut(s) 133, 417, 727, 805, 859, 1225, 1300
LguI GCTCTTC 2 cut(s) 532, 576
LmnI GCTCC 2 cut(s) 322, 1245
Lsp1109I GCAGC 3 cut(s) 530, 678, 1297
LweI GCATC 3 cut(s) 798, 855, 1273
MabI ACCWGGT 1 cut(s) 844
MaeI CTAG 2 cut(s) 737, 1319
MaeII ACGT 5 cut(s) 369, 438, 553, 703, 1011
MaeIII GTNAC 3 cut(s) 23, 549, 682
MalI GATC 7 cut(s) 135, 419, 729, 807, 861, 1227, 1302
MboI GATC 7 cut(s) 133, 417, 727, 805, 859, 1225, 1300
MboII GAAGA 7 cut(s) 143, 389, 519, 593, 785, 835, 973
MflI RGATCY 1 cut(s) 133
MlsI TGGCCA 1 cut(s) 852
MluCI AATT 6 cut(s) 383, 495, 534, 674, 855, 888
MluNI TGGCCA 1 cut(s) 852
MmeI TCCRAC 1 cut(s) 1134
Mox20I TGGCCA 1 cut(s) 852
MscI TGGCCA 1 cut(s) 852
MseI TTAA 5 cut(s) 117, 398, 840, 920, 929
MslI CAYNNNNRTG 3 cut(s) 413, 794, 1269
Msp20I TGGCCA 1 cut(s) 852
MspI CCGG 5 cut(s) 21, 168, 413, 458, 1126
MspR9I CCNGG 5 cut(s) 168, 413, 846, 1127, 1244
Mva1269I GAATGC 2 cut(s) 1001, 1313
MvaI CCWGG 2 cut(s) 846, 1244
MwoI GCNNNNNNNGC 3 cut(s) 1237, 1261, 1319
NciI CCSGG 3 cut(s) 168, 413, 1127
NdeII GATC 7 cut(s) 133, 417, 727, 805, 859, 1225, 1300
NlaIII CATG 4 cut(s) 349, 691, 917, 1255
NlaIV GGNNCC 2 cut(s) 750, 1135
NmuCI GTSAC 2 cut(s) 23, 549
NsbI TGCGCA 1 cut(s) 334
NspI RCATGY 1 cut(s) 1255
PaeR7I CTCGAG 1 cut(s) 1042
PagI TCATGA 1 cut(s) 345
PciSI GCTCTTC 2 cut(s) 532, 576
PctI GAATGC 2 cut(s) 1001, 1313
PfeI GAWTC 1 cut(s) 80
Pfl23II CGTACG 1 cut(s) 704
PkrI GCNGC 5 cut(s) 520, 693, 696, 1312, 1357
Ppu21I YACGTR 2 cut(s) 439, 704
Psp6I CCWGG 2 cut(s) 844, 1242
PspGI CCWGG 2 cut(s) 844, 1242
PspLI CGTACG 1 cut(s) 704
PspN4I GGNNCC 2 cut(s) 750, 1135
PspPI GGNCC 1 cut(s) 814
PstI CTGCAG 1 cut(s) 1357
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 5 cut(s) 706, 750, 756, 785, 1192
RsaNI GTAC 5 cut(s) 705, 749, 755, 784, 1191
RseI CAYNNNNRTG 3 cut(s) 413, 794, 1269
SapI GCTCTTC 2 cut(s) 532, 576
SaqAI TTAA 5 cut(s) 117, 398, 840, 920, 929
SatI GCNGC 5 cut(s) 519, 692, 695, 1311, 1356
Sau3AI GATC 7 cut(s) 133, 417, 727, 805, 859, 1225, 1300
Sau96I GGNCC 1 cut(s) 814
ScrFI CCNGG 5 cut(s) 168, 413, 846, 1127, 1244
SexAI ACCWGGT 1 cut(s) 844
SfaNI GCATC 3 cut(s) 798, 855, 1273
SfcI CTRYAG 1 cut(s) 1353
Sfr274I CTCGAG 1 cut(s) 1042
SinI GGWCC 1 cut(s) 814
SlaI CTCGAG 1 cut(s) 1042
SmiMI CAYNNNNRTG 3 cut(s) 413, 794, 1269
SmlI CTYRAG 1 cut(s) 1042
SmoI CTYRAG 1 cut(s) 1042
SnaBI TACGTA 1 cut(s) 439
SpeI ACTAGT 1 cut(s) 736
Sse9I AATT 6 cut(s) 383, 495, 534, 674, 855, 888
SsiI CCGC 3 cut(s) 516, 694, 787
SspI AATATT 1 cut(s) 216
SspMI CTAG 2 cut(s) 737, 1319
StyD4I CCNGG 5 cut(s) 166, 411, 844, 1125, 1242
TaaI ACNGT 2 cut(s) 286, 833
TaiI ACGT 5 cut(s) 372, 441, 556, 706, 1014
TaqI TCGA 4 cut(s) 445, 611, 804, 1043
TasI AATT 6 cut(s) 383, 495, 534, 674, 855, 888
TatI WGTACW 1 cut(s) 754
TauI GCSGC 1 cut(s) 697
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 5 cut(s) 117, 398, 840, 920, 929
Tru9I TTAA 5 cut(s) 117, 398, 840, 920, 929
TscAI CASTG 3 cut(s) 241, 289, 816
TseFI GTSAC 2 cut(s) 23, 549
TseI GCWGC 4 cut(s) 518, 691, 1310, 1355
Tsp45I GTSAC 2 cut(s) 23, 549
TspDTI ATGAA 7 cut(s) 17, 144, 362, 396, 519, 786, 1287
TspGWI ACGGA 1 cut(s) 1306
TspRI CASTG 3 cut(s) 241, 289, 816
VpaK11BI GGWCC 1 cut(s) 814
XapI RAATTY 2 cut(s) 383, 674
XceI RCATGY 1 cut(s) 1255
XhoI CTCGAG 1 cut(s) 1042
XspI CTAG 2 cut(s) 737, 1319
ZraI GACGTC 1 cut(s) 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.