Rmu_sc0003893.1_g000007

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003893.1
OG0003689
Physical Location & Seq
Forward (+)
31752 .. 32243
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003893.1_g000007.1.cds

Sequence Viewer

Length: 492 bp
atgctcatcgttgtagaaggtgaaattacagtgactaagacgacttacaatgaaggaaaaaaagaaacggagagaggcgatgttgaaagaatgataaagaaacacggtgtcattggggaagagcttctgacctgggcaaaccccactgcccctgagctgaggcatcctactatcttggagaaatatgtagaatgtcctacaaaagtagaagcctttgctctcacaaaggagggattggaaagtgtggtcgcctactatacagatggaatcaacaagtttgagcagttggagaagggcagagatggtgtggcagatactgagggtgcatccagatccactaccactattgaccagcttatccagctccagagtgacatggttcaacagcatcgtgatgaaatggctaatctgggacggagattggatgagatggctgcatttttatccagaatgggttatcctgcaggcacatctcctcctcctgcagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.1

Weight (kDa)

4.97

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 327
AgsI TTSAA 2 cut(s) 86, 383
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 5 cut(s) 124, 157, 355, 364, 488
AluI AGCT 5 cut(s) 124, 157, 355, 364, 488
AlwI GGATC 1 cut(s) 327
AlwNI CAGNNNCTG 1 cut(s) 317
ApeKI GCWGC 2 cut(s) 434, 485
Asp700I GAANNNNTTC 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 421
BccI CCATC 3 cut(s) 257, 296, 424
BciT130I CCWGG 1 cut(s) 133
BfmI CTRYAG 2 cut(s) 462, 483
BisI GCNGC 2 cut(s) 435, 486
BlsI GCNGC 2 cut(s) 436, 487
Bme1390I CCNGG 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 3 cut(s) 172, 335, 397
BpmI CTGGAG 1 cut(s) 350
Bpu10I CCTNAGC 2 cut(s) 153, 158
BsaJI CCNNGG 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 460, 490
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 3 cut(s) 163, 326, 430
BseMII CTCAG 3 cut(s) 144, 149, 309
BseRI GAGGAG 2 cut(s) 465, 468
BseXI GCAGC 1 cut(s) 421
BslFI GGGAC 1 cut(s) 426
BsmFI GGGAC 1 cut(s) 426
Bsp143I GATC 1 cut(s) 332
BspCNI CTCAG 3 cut(s) 145, 150, 310
BspMAI CTGCAG 2 cut(s) 466, 487
BspPI GGATC 1 cut(s) 327
BspQI GCTCTTC 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 2 cut(s) 31, 107
Bst6I CTCTTC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 4 cut(s) 36, 153, 158, 318
BstF5I GGATG 3 cut(s) 163, 326, 430
BstKTI GATC 1 cut(s) 335
BstMBI GATC 1 cut(s) 332
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstNI CCWGG 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 131
BstSFI CTRYAG 2 cut(s) 462, 483
BstV1I GCAGC 1 cut(s) 421
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BtgZI GCGATG 1 cut(s) 93
BtsCI GGATG 3 cut(s) 163, 326, 430
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 2 cut(s) 36, 144
Cac8I GCNNGC 1 cut(s) 466
CaiI CAGNNNCTG 1 cut(s) 317
CviAII CATG 1 cut(s) 376
CviJI RGCY 8 cut(s) 124, 157, 212, 355, 364, 404, 434, 488
CviKI_1 RGCY 8 cut(s) 124, 157, 212, 355, 364, 404, 434, 488
DdeI CTNAG 4 cut(s) 36, 153, 158, 318
DpnI GATC 1 cut(s) 334
DpnII GATC 1 cut(s) 332
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 131
FaeI CATG 1 cut(s) 379
FaiI YATR 3 cut(s) 186, 258, 377
FaqI GGGAC 1 cut(s) 426
FatI CATG 1 cut(s) 375
Fnu4HI GCNGC 2 cut(s) 435, 486
FokI GGATG 3 cut(s) 150, 313, 437
Fsp4HI GCNGC 2 cut(s) 435, 486
GluI GCNGC 2 cut(s) 435, 486
GsuI CTGGAG 1 cut(s) 350
Hin1II CATG 1 cut(s) 379
HinfI GANTC 1 cut(s) 267
HphI GGTGA 1 cut(s) 32
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 4 cut(s) 330, 367, 392, 447
HpyAV CCTTC 3 cut(s) 11, 47, 286
HpyCH4III ACNGT 2 cut(s) 31, 107
HpyCH4V TGCA 4 cut(s) 326, 437, 464, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 4 cut(s) 36, 153, 158, 318
Hsp92II CATG 1 cut(s) 379
Kzo9I GATC 1 cut(s) 332
LguI GCTCTTC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 369
Lsp1109I GCAGC 1 cut(s) 421
LweI GCATC 3 cut(s) 172, 335, 397
MaeIII GTNAC 2 cut(s) 31, 371
MalI GATC 1 cut(s) 334
MboI GATC 1 cut(s) 332
MboII GAAGA 1 cut(s) 131
MflI RGATCY 1 cut(s) 332
MluCI AATT 1 cut(s) 24
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 6 cut(s) 68, 153, 223, 313, 486, 489
MroXI GAANNNNTTC 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 393
MspR9I CCNGG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 361
NdeII GATC 1 cut(s) 332
NlaIII CATG 1 cut(s) 379
NmuCI GTSAC 2 cut(s) 31, 371
PciSI GCTCTTC 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 267
PkrI GCNGC 2 cut(s) 436, 487
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PstI CTGCAG 2 cut(s) 466, 487
PstNI CAGNNNCTG 1 cut(s) 317
PsuI RGATCY 1 cut(s) 332
RseI CAYNNNNRTG 1 cut(s) 393
SapI GCTCTTC 1 cut(s) 114
SatI GCNGC 2 cut(s) 435, 486
Sau3AI GATC 1 cut(s) 332
SbfI CCTGCAGG 1 cut(s) 466
ScrFI CCNGG 1 cut(s) 133
SdaI CCTGCAGG 1 cut(s) 466
SetI ASST 7 cut(s) 22, 126, 134, 159, 357, 366, 490
SfaNI GCATC 3 cut(s) 172, 335, 397
SfcI CTRYAG 2 cut(s) 462, 483
SmiMI CAYNNNNRTG 1 cut(s) 393
Sse8387I CCTGCAGG 1 cut(s) 466
Sse9I AATT 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 2 cut(s) 31, 107
TasI AATT 1 cut(s) 24
TfiI GAWTC 1 cut(s) 267
TscAI CASTG 2 cut(s) 36, 151
TseFI GTSAC 2 cut(s) 31, 371
TseI GCWGC 2 cut(s) 434, 485
Tsp45I GTSAC 2 cut(s) 31, 371
TspDTI ATGAA 2 cut(s) 66, 411
TspGWI ACGGA 2 cut(s) 83, 430
TspRI CASTG 2 cut(s) 36, 151
XmnI GAANNNNTTC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.