Rroxscaffold_159G00432980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000159
OG0003689
Physical Location & Seq
Reverse (-)
698975 .. 699417
443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_159G00432980.1

Sequence Viewer

Length: 402 bp
ATGAAGGAAAAAAAGAAAACGGAGAGAGGCGATGTTGAAAGAATGATAAAGAAACACGGTGTCATTGGGGAAGAGCTTCTGACCTGGGCAAACCCCACTGCCCCTGAGCTGAGGCATCCTACTATCTTGGAGAAATATGAGGGATTGGAAAGTGTGGTCGCCTACTATACAGATGGAATCAACAAGTTTGAGCAGTGGGAGAAGGGCAGAGATGGTGTGGCAGATACTGAGGGTGCATCCAGATCCACTACCACTATTGACCAGCTTATCCAGCTCCAGAGTGACATGGTTCAACAGCATCGTGATGAAATGGCTAATCTGGGACGGAGATTGGATGAGATGGCTGCATTTTTATCCAGAATGGGATATCCTGCAGGCACATCTCCTCCTCCTGCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.96

Weight (kDa)

5.42

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 237
AgsI TTSAA 2 cut(s) 38, 293
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 5 cut(s) 76, 109, 265, 274, 398
AluI AGCT 5 cut(s) 76, 109, 265, 274, 398
AlwI GGATC 1 cut(s) 237
AlwNI CAGNNNCTG 1 cut(s) 227
ApeKI GCWGC 2 cut(s) 344, 395
Asp700I GAANNNNTTC 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 331
BccI CCATC 3 cut(s) 167, 206, 334
BciT130I CCWGG 1 cut(s) 85
BfmI CTRYAG 2 cut(s) 372, 393
BisI GCNGC 2 cut(s) 345, 396
BlsI GCNGC 2 cut(s) 346, 397
Bme1390I CCNGG 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 85
BmsI GCATC 3 cut(s) 124, 245, 307
BpmI CTGGAG 1 cut(s) 260
Bpu10I CCTNAGC 2 cut(s) 105, 110
BsaJI CCNNGG 1 cut(s) 84
BsaXI ACNNNNNCTCC 2 cut(s) 370, 400
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 3 cut(s) 115, 236, 340
BseMII CTCAG 3 cut(s) 96, 101, 219
BseRI GAGGAG 2 cut(s) 375, 378
BseXI GCAGC 1 cut(s) 331
BslFI GGGAC 1 cut(s) 336
BsmFI GGGAC 1 cut(s) 336
Bsp143I GATC 1 cut(s) 242
BspCNI CTCAG 3 cut(s) 97, 102, 220
BspMAI CTGCAG 2 cut(s) 376, 397
BspPI GGATC 1 cut(s) 237
BspQI GCTCTTC 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 59
Bst6I CTCTTC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 376
BstDEI CTNAG 3 cut(s) 105, 110, 228
BstF5I GGATG 3 cut(s) 115, 236, 340
BstKTI GATC 1 cut(s) 245
BstMBI GATC 1 cut(s) 242
BstMWI GCNNNNNNNGC 1 cut(s) 271
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 83
BstSFI CTRYAG 2 cut(s) 372, 393
BstV1I GCAGC 1 cut(s) 331
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BtgZI GCGATG 1 cut(s) 45
BtsCI GGATG 3 cut(s) 115, 236, 340
BtsI GCAGTG 2 cut(s) 96, 200
BtsIMutI CAGTG 2 cut(s) 96, 200
Cac8I GCNNGC 1 cut(s) 376
CaiI CAGNNNCTG 1 cut(s) 227
CviAII CATG 1 cut(s) 286
CviJI RGCY 7 cut(s) 76, 109, 265, 274, 314, 344, 398
CviKI_1 RGCY 7 cut(s) 76, 109, 265, 274, 314, 344, 398
DdeI CTNAG 3 cut(s) 105, 110, 228
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco32I GATATC 1 cut(s) 368
EcoRII CCWGG 1 cut(s) 83
EcoRV GATATC 1 cut(s) 368
FaeI CATG 1 cut(s) 289
FaiI YATR 3 cut(s) 138, 168, 287
FaqI GGGAC 1 cut(s) 336
FatI CATG 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 345, 396
FokI GGATG 3 cut(s) 102, 223, 347
Fsp4HI GCNGC 2 cut(s) 345, 396
GluI GCNGC 2 cut(s) 345, 396
GsuI CTGGAG 1 cut(s) 260
Hin1II CATG 1 cut(s) 289
HinfI GANTC 1 cut(s) 177
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 4 cut(s) 240, 277, 302, 357
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 4 cut(s) 236, 347, 374, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
HpyF3I CTNAG 3 cut(s) 105, 110, 228
Hsp92II CATG 1 cut(s) 289
Kzo9I GATC 1 cut(s) 242
LguI GCTCTTC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 279
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 3 cut(s) 124, 245, 307
MaeIII GTNAC 1 cut(s) 281
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MboII GAAGA 1 cut(s) 83
MflI RGATCY 1 cut(s) 242
MnlI CCTC 6 cut(s) 20, 105, 133, 223, 396, 399
MroXI GAANNNNTTC 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 271
NdeII GATC 1 cut(s) 242
NlaIII CATG 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 281
PciSI GCTCTTC 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 2 cut(s) 346, 397
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PstI CTGCAG 2 cut(s) 376, 397
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 303
SapI GCTCTTC 1 cut(s) 66
SatI GCNGC 2 cut(s) 345, 396
Sau3AI GATC 1 cut(s) 242
SbfI CCTGCAGG 1 cut(s) 376
ScrFI CCNGG 1 cut(s) 85
SdaI CCTGCAGG 1 cut(s) 376
SetI ASST 6 cut(s) 78, 86, 111, 267, 276, 400
SfaNI GCATC 3 cut(s) 124, 245, 307
SfcI CTRYAG 2 cut(s) 372, 393
SmiMI CAYNNNNRTG 1 cut(s) 303
Sse8387I CCTGCAGG 1 cut(s) 376
StyD4I CCNGG 1 cut(s) 83
TaaI ACNGT 1 cut(s) 59
TfiI GAWTC 1 cut(s) 177
TscAI CASTG 2 cut(s) 103, 200
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 2 cut(s) 344, 395
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 2 cut(s) 17, 321
TspGWI ACGGA 2 cut(s) 35, 340
TspRI CASTG 2 cut(s) 103, 200
XmnI GAANNNNTTC 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.