Rw5G010010

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
10994000 .. 10995874
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G010010.1

Sequence Viewer

Length: 1488 bp
ATGTTAGATAATGCTATCCCCGAAAAAATCAAGATAGAAGTGGTGAAAATCATAAAGTATCAGAAAATATTTGAAAGAAACTACGCCACTGGTGTAGATGTTGATGTGGACTTAGTTTTTGTATTCAATGCTATCACTGTGAATGGCAATCAACCCGTGGCAAGTTATTTGAAGGAGCATTTCTGCGCAAATGCCCTCATGAAAGTATCCATCCTTCAAGACGTGGGAGAAGATGAATTCAACTTGGTATTAAAGTTTTCCATCCCGGTGATCTACGAGGAGAATAGCTACGTGGTTCGAGCAGGAGAGCCGGATGACAAAATGCTCATCATCACACAAGGCGTGCTAATTGTATATGTGGACAACACCGCAGCAGGCTCTTCATCAATTATCATCCCCAAGTCACGTTTTGAGAAAGGTGAAGTTTATGGAGAAGAGCTTTTGAACGGCCGTATTCCTATATCGACCCGAGATGTCAAATGCCAAACAAAAGTAGAAGCCTTCGCTCTCACAAGTCGTGGGTTGAAATTTGTGGTAACCATGCTGCGGCAGACACGTACGACTTCGACATTGTTCTATGATCCAGAACTAGTAAATAAGGCATATAGAGAGTTAACAACTACAAGATCGGAGAAGTTACTACAGCAAAAGATGAAGATGGATTGCAAGGAGAAGGATATGCTTGAGTGGCTGTCAAGAAATTGTGTTCACCGGGATCAGCAGACATTAGTTATGAAACACATAAAGGCTAATAGTGTACTGGAAGAAAACTTGGATGCTGAGGTGGATGTGAGGTATCTATTCTCTATTCGTCTTCCCTGGCATATCGAATATGAAATAAAGAAGGATCTCTGCATGAGTACTCTCCATAAAGTACCTGTACTTGATGGTGTTGATGAAGATGTGTTGTACCGCATCTGTATGTCTCTCGATCCAGTGGTCCTCCCAAAGAATAACTGTGTTGTTAAACCAGGTGGCCAAATTGATCGGATGCTCATCATTGTAGAAGGTGAAATTACTTTGACCGAGCAGACTTTCCATGTTTTAAGTAGACTAAGAAAGAGAGGCAACATTGAAAGAATACTGAAGAAAGGCGATTTCTTTGGGGAGGAACTTCTGACTTGGGCATTCCCTGACGTCTCTATTTCCAAATATAAACCTGATATCTCGAGAAAATATGTTGATTGTAGTGCAAAAGTAGAAGCCTTTGCTCTCACGAAGGAGGGTGTGGAAAGTGTAGTCGCCTACTACCGGGAGGGAACCAACATTTTTGAGCAGTTGGAGAATGGTAAAGATGGTGTGGCTGATACTAGTGGTACATCCACATCCCCAACTATTGAGCAGAGACTTGATCAGCTTATTCAGCACCAGGTTGACATGCTTCAACAGCATCGTGATGAAATGGCTAATCAGGGACGGAGATTGGATCAGATAGCTGCATTCCTAGCCAGATTGGGATATCCAGACACACCTCCTCCTGCGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

495

Amino Acids

56.36

Weight (kDa)

5.61

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1140
Acc16I TGCGCA 1 cut(s) 187
AccI GTMKAC 1 cut(s) 1051
AciI CCGC 4 cut(s) 369, 547, 913, 1481
AclWI GGATC 5 cut(s) 575, 723, 855, 926, 1434
AcoI YGGCCR 2 cut(s) 448, 976
AcsI RAATTY 2 cut(s) 236, 527
AcuI CTGAAG 1 cut(s) 1106
AcyI GRCGYC 1 cut(s) 1137
AfaI GTAC 7 cut(s) 559, 759, 862, 876, 882, 911, 1318
AfiI CCNNNNNNNGG 2 cut(s) 546, 1251
AflIII ACRYGT 1 cut(s) 554
AgsI TTSAA 9 cut(s) 74, 127, 172, 218, 241, 445, 526, 1076, 1385
AhlI ACTAGT 2 cut(s) 589, 1310
AjiI CACGTC 1 cut(s) 223
AjnI CCWGG 3 cut(s) 818, 970, 1368
AluBI AGCT 4 cut(s) 288, 439, 1357, 1436
AluI AGCT 4 cut(s) 288, 439, 1357, 1436
Alw26I GTCTC 3 cut(s) 930, 1144, 1339
AlwI GGATC 5 cut(s) 575, 723, 855, 926, 1434
Ama87I CYCGRG 2 cut(s) 468, 1168
AoxI GGCC 2 cut(s) 448, 976
ApeKI GCWGC 3 cut(s) 371, 544, 1436
ApoI RAATTY 2 cut(s) 236, 527
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 1 cut(s) 940
AsuC2I CCSGG 3 cut(s) 266, 713, 1253
AsuHPI GGTGA 5 cut(s) 55, 280, 431, 701, 1022
AvaI CYCGRG 2 cut(s) 468, 1168
AvaII GGWCC 1 cut(s) 940
BalI TGGCCA 1 cut(s) 978
BarI GAAGNNNNNNTAC 2 cut(s) 198, 230
BbsI GAAGAC 1 cut(s) 806
BbvCI CCTCAGC 1 cut(s) 780
BbvI GCAGC 3 cut(s) 383, 531, 1423
BccI CCATC 5 cut(s) 218, 269, 652, 881, 1289
BceAI ACGGC 2 cut(s) 435, 463
BciT130I CCWGG 3 cut(s) 820, 972, 1370
BciVI GTATCC 1 cut(s) 217
BclI TGATCA 1 cut(s) 1351
BcnI CCSGG 3 cut(s) 266, 713, 1253
BcoDI GTCTC 3 cut(s) 930, 1144, 1339
BcuI ACTAGT 2 cut(s) 589, 1310
BfaI CTAG 3 cut(s) 590, 1311, 1445
BfmI CTRYAG 1 cut(s) 641
BfuI GTATCC 1 cut(s) 217
BisI GCNGC 5 cut(s) 372, 545, 548, 1437, 1482
BlsI GCNGC 5 cut(s) 373, 546, 549, 1438, 1483
BmcAI AGTACT 1 cut(s) 862
Bme1390I CCNGG 6 cut(s) 266, 713, 820, 972, 1253, 1370
Bme18I GGWCC 1 cut(s) 940
BmeT110I CYCGRG 2 cut(s) 468, 1168
BmgBI CACGTC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 940
BmiI GGNNCC 1 cut(s) 1261
BmrFI CCNGG 6 cut(s) 266, 713, 820, 972, 1253, 1370
BmsI GCATC 4 cut(s) 766, 924, 981, 1399
BpiI GAAGAC 1 cut(s) 806
Bpu10I CCTNAGC 1 cut(s) 780
BpuEI CTTGAG 1 cut(s) 704
BpuMI CCSGG 3 cut(s) 266, 713, 1253
BsaAI YACGTR 2 cut(s) 292, 557
BsaBI GATNNNNATC 1 cut(s) 995
BsaHI GRCGYC 1 cut(s) 1137
BsaJI CCNNGG 2 cut(s) 156, 818
BsaXI ACNNNNNCTCC 1 cut(s) 1459
Bsc4I CCNNNNNNNGG 2 cut(s) 546, 1251
Bse1I ACTGG 3 cut(s) 94, 765, 935
Bse8I GATNNNNATC 1 cut(s) 995
BseBI CCWGG 3 cut(s) 820, 972, 1370
BseDI CCNNGG 2 cut(s) 156, 818
BseGI GGATG 9 cut(s) 210, 261, 319, 393, 781, 793, 996, 1319, 1325
BseJI GATNNNNATC 1 cut(s) 995
BseLI CCNNNNNNNGG 2 cut(s) 546, 1251
BseMII CTCAG 1 cut(s) 771
BseNI ACTGG 3 cut(s) 94, 765, 935
BseRI GAGGAG 2 cut(s) 293, 1464
BseX3I CGGCCG 1 cut(s) 448
BseXI GCAGC 3 cut(s) 383, 531, 1423
Bsh1285I CGRYCG 1 cut(s) 451
BshFI GGCC 2 cut(s) 450, 978
BsiEI CGRYCG 1 cut(s) 451
BsiHKCI CYCGRG 2 cut(s) 468, 1168
BsiSI CCGG 4 cut(s) 266, 311, 712, 1252
BsiWI CGTACG 1 cut(s) 557
BslFI GGGAC 1 cut(s) 1428
BslI CCNNNNNNNGG 2 cut(s) 546, 1251
BsmAI GTCTC 3 cut(s) 930, 1144, 1339
BsmBI CGTCTC 1 cut(s) 1144
BsmFI GGGAC 1 cut(s) 1428
BsmI GAATGC 2 cut(s) 1127, 1439
BsnI GGCC 2 cut(s) 450, 978
BsoBI CYCGRG 2 cut(s) 468, 1168
Bsp143I GATC 9 cut(s) 270, 580, 626, 715, 847, 931, 985, 1351, 1426
BspACI CCGC 4 cut(s) 369, 547, 913, 1481
BspANI GGCC 2 cut(s) 450, 978
BspCNI CTCAG 1 cut(s) 772
BspHI TCATGA 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 1261
BspPI GGATC 5 cut(s) 575, 723, 855, 926, 1434
BspQI GCTCTTC 2 cut(s) 385, 429
BsrI ACTGG 3 cut(s) 94, 765, 935
BssECI CCNNGG 2 cut(s) 156, 818
BssMI GATC 9 cut(s) 270, 580, 626, 715, 847, 931, 985, 1351, 1426
BssNI GRCGYC 1 cut(s) 1137
Bst2UI CCWGG 3 cut(s) 820, 972, 1370
Bst4CI ACNGT 2 cut(s) 139, 959
Bst6I CTCTTC 2 cut(s) 385, 429
BstACI GRCGYC 1 cut(s) 1137
BstBAI YACGTR 2 cut(s) 292, 557
BstC8I GCNNGC 2 cut(s) 344, 376
BstDEI CTNAG 3 cut(s) 112, 780, 1055
BstDSI CCRYGG 1 cut(s) 156
BstEII GGTNACC 1 cut(s) 535
BstF5I GGATG 9 cut(s) 210, 261, 319, 393, 781, 793, 996, 1319, 1325
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 9 cut(s) 273, 583, 629, 718, 850, 934, 988, 1354, 1429
BstMAI GTCTC 3 cut(s) 930, 1144, 1339
BstMBI GATC 9 cut(s) 270, 580, 626, 715, 847, 931, 985, 1351, 1426
BstMCI CGRYCG 1 cut(s) 451
BstMWI GCNNNNNNNGC 4 cut(s) 688, 1363, 1387, 1445
BstNI CCWGG 3 cut(s) 820, 972, 1370
BstNSI RCATGY 1 cut(s) 1381
BstPI GGTNACC 1 cut(s) 535
BstSCI CCNGG 6 cut(s) 264, 711, 818, 970, 1251, 1368
BstSFI CTRYAG 1 cut(s) 641
BstV1I GCAGC 3 cut(s) 383, 531, 1423
BstV2I GAAGAC 1 cut(s) 806
BstX2I RGATCY 1 cut(s) 847
BstYI RGATCY 1 cut(s) 847
BstZI CGGCCG 1 cut(s) 448
BsuI GTATCC 1 cut(s) 217
BsuRI GGCC 2 cut(s) 450, 978
BtgI CCRYGG 1 cut(s) 156
BtrI CACGTC 1 cut(s) 223
BtsCI GGATG 9 cut(s) 210, 261, 319, 393, 781, 793, 996, 1319, 1325
BtsIMutI CAGTG 3 cut(s) 87, 135, 942
Cac8I GCNNGC 2 cut(s) 344, 376
CciI TCATGA 1 cut(s) 198
CfoI GCGC 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 940
CsiI ACCWGGT 2 cut(s) 970, 1368
Csp6I GTAC 7 cut(s) 558, 758, 861, 875, 881, 910, 1317
CviAII CATG 5 cut(s) 199, 541, 856, 1040, 1378
CviQI GTAC 7 cut(s) 558, 758, 861, 875, 881, 910, 1317
DdeI CTNAG 3 cut(s) 112, 780, 1055
DpnI GATC 9 cut(s) 272, 582, 628, 717, 849, 933, 987, 1353, 1428
DpnII GATC 9 cut(s) 270, 580, 626, 715, 847, 931, 985, 1351, 1426
EaeI YGGCCR 2 cut(s) 448, 976
EagI CGGCCG 1 cut(s) 448
Eam1104I CTCTTC 2 cut(s) 385, 429
EarI CTCTTC 2 cut(s) 385, 429
EclXI CGGCCG 1 cut(s) 448
Eco32I GATATC 2 cut(s) 1165, 1460
Eco47I GGWCC 1 cut(s) 940
Eco52I CGGCCG 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 1106
Eco88I CYCGRG 2 cut(s) 468, 1168
Eco91I GGTNACC 1 cut(s) 535
EcoO65I GGTNACC 1 cut(s) 535
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 3 cut(s) 818, 970, 1368
EcoRV GATATC 2 cut(s) 1165, 1460
Esp3I CGTCTC 1 cut(s) 1144
FaeI CATG 5 cut(s) 202, 544, 859, 1043, 1381
FaqI GGGAC 1 cut(s) 1428
FatI CATG 5 cut(s) 198, 540, 855, 1039, 1377
FbaI TGATCA 1 cut(s) 1351
FblI GTMKAC 1 cut(s) 1051
Fnu4HI GCNGC 5 cut(s) 372, 545, 548, 1437, 1482
FokI GGATG 9 cut(s) 197, 248, 326, 380, 788, 800, 1003, 1306, 1312
Fsp4HI GCNGC 5 cut(s) 372, 545, 548, 1437, 1482
FspBI CTAG 3 cut(s) 590, 1311, 1445
FspI TGCGCA 1 cut(s) 187
GlaI GCGC 1 cut(s) 187
GluI GCNGC 5 cut(s) 372, 545, 548, 1437, 1482
HaeIII GGCC 2 cut(s) 450, 978
HapII CCGG 4 cut(s) 266, 311, 712, 1252
HhaI GCGC 1 cut(s) 188
Hin1I GRCGYC 1 cut(s) 1137
Hin1II CATG 5 cut(s) 202, 544, 859, 1043, 1381
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HincII GTYRAC 2 cut(s) 615, 1375
HindII GTYRAC 2 cut(s) 615, 1375
HpaI GTTAAC 1 cut(s) 615
HpaII CCGG 4 cut(s) 266, 311, 712, 1252
HphI GGTGA 5 cut(s) 55, 280, 431, 701, 1022
Hpy166II GTNNAC 7 cut(s) 109, 361, 615, 709, 758, 1052, 1375
Hpy188I TCNGA 5 cut(s) 63, 631, 990, 1119, 1431
Hpy8I GTNNAC 7 cut(s) 109, 361, 615, 709, 758, 1052, 1375
HpyAV CCTTC 7 cut(s) 166, 224, 511, 667, 838, 1001, 1213
HpyCH4III ACNGT 2 cut(s) 139, 959
HpyCH4IV ACGT 5 cut(s) 222, 291, 406, 556, 1137
HpyCH4V TGCA 4 cut(s) 666, 855, 1193, 1439
HpyF10VI GCNNNNNNNGC 4 cut(s) 688, 1363, 1387, 1445
HpyF3I CTNAG 3 cut(s) 112, 780, 1055
HpySE526I ACGT 5 cut(s) 222, 291, 406, 556, 1137
Hsp92I GRCGYC 1 cut(s) 1137
Hsp92II CATG 5 cut(s) 202, 544, 859, 1043, 1381
HspAI GCGC 1 cut(s) 186
Ksp22I TGATCA 1 cut(s) 1351
KspAI GTTAAC 1 cut(s) 615
Kzo9I GATC 9 cut(s) 270, 580, 626, 715, 847, 931, 985, 1351, 1426
LguI GCTCTTC 2 cut(s) 385, 429
LmnI GCTCC 1 cut(s) 175
Lsp1109I GCAGC 3 cut(s) 383, 531, 1423
LweI GCATC 4 cut(s) 766, 924, 981, 1399
MabI ACCWGGT 2 cut(s) 970, 1368
MaeI CTAG 3 cut(s) 590, 1311, 1445
MaeII ACGT 5 cut(s) 222, 291, 406, 556, 1137
MaeIII GTNAC 3 cut(s) 402, 535, 636
MalI GATC 9 cut(s) 272, 582, 628, 717, 849, 933, 987, 1353, 1428
MboI GATC 9 cut(s) 270, 580, 626, 715, 847, 931, 985, 1351, 1426
MboII GAAGA 8 cut(s) 242, 372, 446, 667, 776, 806, 911, 1099
MflI RGATCY 1 cut(s) 847
MlsI TGGCCA 1 cut(s) 978
MluCI AATT 7 cut(s) 236, 348, 387, 527, 700, 981, 1014
MluNI TGGCCA 1 cut(s) 978
MmeI TCCRAC 1 cut(s) 1260
Mox20I TGGCCA 1 cut(s) 978
MscI TGGCCA 1 cut(s) 978
MseI TTAA 4 cut(s) 251, 614, 966, 1046
MslI CAYNNNNRTG 3 cut(s) 266, 920, 1395
Msp20I TGGCCA 1 cut(s) 978
MspI CCGG 4 cut(s) 266, 311, 712, 1252
MspR9I CCNGG 6 cut(s) 266, 713, 820, 972, 1253, 1370
Mva1269I GAATGC 2 cut(s) 1127, 1439
MvaI CCWGG 3 cut(s) 820, 972, 1370
MwoI GCNNNNNNNGC 4 cut(s) 688, 1363, 1387, 1445
NciI CCSGG 3 cut(s) 266, 713, 1253
NdeII GATC 9 cut(s) 270, 580, 626, 715, 847, 931, 985, 1351, 1426
NlaIII CATG 5 cut(s) 202, 544, 859, 1043, 1381
NlaIV GGNNCC 1 cut(s) 1261
NmuCI GTSAC 1 cut(s) 402
NsbI TGCGCA 1 cut(s) 187
NspI RCATGY 1 cut(s) 1381
PaeR7I CTCGAG 1 cut(s) 1168
PagI TCATGA 1 cut(s) 198
PciSI GCTCTTC 2 cut(s) 385, 429
PctI GAATGC 2 cut(s) 1127, 1439
Pfl23II CGTACG 1 cut(s) 557
PkrI GCNGC 5 cut(s) 373, 546, 549, 1438, 1483
Ppu21I YACGTR 2 cut(s) 292, 557
Psp6I CCWGG 3 cut(s) 818, 970, 1368
PspEI GGTNACC 1 cut(s) 535
PspGI CCWGG 3 cut(s) 818, 970, 1368
PspLI CGTACG 1 cut(s) 557
PspN4I GGNNCC 1 cut(s) 1261
PspPI GGNCC 1 cut(s) 940
PsuI RGATCY 1 cut(s) 847
RsaI GTAC 7 cut(s) 559, 759, 862, 876, 882, 911, 1318
RsaNI GTAC 7 cut(s) 558, 758, 861, 875, 881, 910, 1317
RseI CAYNNNNRTG 3 cut(s) 266, 920, 1395
SapI GCTCTTC 2 cut(s) 385, 429
SaqAI TTAA 4 cut(s) 251, 614, 966, 1046
SatI GCNGC 5 cut(s) 372, 545, 548, 1437, 1482
Sau3AI GATC 9 cut(s) 270, 580, 626, 715, 847, 931, 985, 1351, 1426
Sau96I GGNCC 1 cut(s) 940
ScaI AGTACT 1 cut(s) 862
ScrFI CCNGG 6 cut(s) 266, 713, 820, 972, 1253, 1370
SexAI ACCWGGT 2 cut(s) 970, 1368
SfaNI GCATC 4 cut(s) 766, 924, 981, 1399
SfcI CTRYAG 1 cut(s) 641
Sfr274I CTCGAG 1 cut(s) 1168
SinI GGWCC 1 cut(s) 940
SlaI CTCGAG 1 cut(s) 1168
SmiMI CAYNNNNRTG 3 cut(s) 266, 920, 1395
SmlI CTYRAG 2 cut(s) 683, 1168
SmoI CTYRAG 2 cut(s) 683, 1168
SpeI ACTAGT 2 cut(s) 589, 1310
Sse9I AATT 7 cut(s) 236, 348, 387, 527, 700, 981, 1014
SsiI CCGC 4 cut(s) 369, 547, 913, 1481
SspI AATATT 1 cut(s) 69
SspMI CTAG 3 cut(s) 590, 1311, 1445
StyD4I CCNGG 6 cut(s) 264, 711, 818, 970, 1251, 1368
TaaI ACNGT 2 cut(s) 139, 959
TaiI ACGT 5 cut(s) 225, 294, 409, 559, 1140
TaqI TCGA 6 cut(s) 298, 464, 566, 828, 930, 1169
TaqII GACCGA 1 cut(s) 1040
TasI AATT 7 cut(s) 236, 348, 387, 527, 700, 981, 1014
TatI WGTACW 3 cut(s) 757, 860, 880
TauI GCSGC 2 cut(s) 550, 1484
Tru1I TTAA 4 cut(s) 251, 614, 966, 1046
Tru9I TTAA 4 cut(s) 251, 614, 966, 1046
TscAI CASTG 3 cut(s) 94, 142, 942
TseFI GTSAC 1 cut(s) 402
TseI GCWGC 3 cut(s) 371, 544, 1436
Tsp45I GTSAC 1 cut(s) 402
TspDTI ATGAA 8 cut(s) 215, 249, 372, 668, 749, 849, 912, 1413
TspGWI ACGGA 1 cut(s) 1432
TspRI CASTG 3 cut(s) 94, 142, 942
VpaK11BI GGWCC 1 cut(s) 940
XapI RAATTY 2 cut(s) 236, 527
XceI RCATGY 1 cut(s) 1381
XhoI CTCGAG 1 cut(s) 1168
XmiI GTMKAC 1 cut(s) 1051
XspI CTAG 3 cut(s) 590, 1311, 1445
ZraI GACGTC 1 cut(s) 1138
ZrmI AGTACT 1 cut(s) 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.