Rh1AG062900

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
10532818 .. 10558808
25991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG062900.1

Sequence Viewer

Length: 1611 bp
ATGTCTGATCACCAAGTCAAGAGCGTTGTCGTAAGCGTTGCATCACAACCAGGATCCAGTTCCGAAGGTACGGACGGGCAACGCTCAGATATTCGGACTCTAATTAAGAAATCATTGTCAACAGATACAACTTCAATTAAGATTGCATTGTTAGCAGTATTGGTAGCACTTAAATATTCCCTTGCAGATATATGGGTACCATTGGGACGTCATGTTTGGGGGGCAATTGTAGGTAAAATCGAGGTGAATCTCAGTATGCGACAACGGAGGGAACTACTAGTGACATTAGTTCCCCATATGGTTCTCTGTTTGACCATGACATTTCTTCTGCCCATCAGTTTTCTGCGGAAACTGATATTAATAACAGGGAATTTTCTACCTAATACGCAGGAAAGGATACTACTTGCAATATCTTGTATTGGGTTGTTAGTGGATCCTTTGTTCTTTTACATTCCATTCATCGATGAGAAAAGAAAGTGTATTGGAATGGACAAGAAGTTAAGGGATGTAGTTCTTGCATTGCGATCACTTACAGATCTCGCTTTCGCACTCCATACTGATGCTCAGATTCGTGATCTGACTGACGTGCCCTCCGACCCCTTCGACTTTGAGTATGAGGATATCGTGTATAGGGGTTTAAAGTGGATATCTCAAGATATCATAATCGAGGTCCTTCCTATTCTTCCCATCCAACAGGTCATACTAGTAGCTATATTTTTCAGAATGAATGATGCTGGATATCTAAATGAAGCAGCAACTGGCAACGTTTTTCTTACTTTGCAATTAATTGCAAGGGGTTGCCAAATCTACCACTTCTGGAAGCCATTTAAAAGGGTTGGAAAATGGGCCATAAGTGCATTCTTTATCCTCATGTACATCTTGGTTGGCCATACATATATTCTGTGGGAAACTCAACAAGCATTGGACAATGAGAAGGAGAAAATTAAATCCAAATTTGAAGCTCTAGGTACATGGATGGTAAGAAATGGTATCCCTGAAGAAGTGAAGACCGAAGCAGTGAAAATCATAACAGAAAAGGAAGTAGTGGAGAAAAACTACGATGCTGATGTGGACTTGCTTTTTGTTTTCAATGCTCTTACTGGGGATGAAAACATGCGTATCAGGAGTGTTTTGAAGAGGCATTTGTGCCTAAATGCCCTACAGAAAGTATCCATCCTTGATCATGTTCTTCAAGCAGTAGTGATTAATGCTCTCGAGCCAGTAGTCTACAAGGAGAATAGCTGCGTGGTTCAAGCAGGAAAGTCAATTGATAGAATGCTCATCATCACAGAAGGCGTAATTTTCTATACAGACAACACCAGATCTAATGTTGCACCTGAAGCAGGCACCTCATCCACAATGAAAATCCGTAAACCACGTTTTGAGAAAGGTGAAGTTTATGGAGAAGAGGTTCTGACTATCGGCGAGAACGACCCTTTTCCTACATCAGCCCGAGATGTCAAGTGCGAAAGAAAAGTAGAAGCCTTCGCTCTCGCATGCAGAGGTTTTCCTAACTTCAAATACGTATCCGACATGATGCGGCGGCGTAAGTCCCCAGATGGATCGAATGATCCGGAGCTAGTATACAAGGTTAAAATGATTCCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

536

Amino Acids

60.72

Weight (kDa)

8.43

Isoelectric Point (pI)

34.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 211
Acc65I GGTACC 1 cut(s) 196
AccB1I GGYRCC 2 cut(s) 196, 1346
AccI GTMKAC 2 cut(s) 1227, 1584
AccIII TCCGGA 1 cut(s) 1573
AciI CCGC 3 cut(s) 346, 1540, 1543
AclI AACGTT 1 cut(s) 765
AclWI GGATC 6 cut(s) 48, 61, 428, 441, 1565, 1570
AcoI YGGCCR 1 cut(s) 886
AcsI RAATTY 2 cut(s) 370, 953
AcuI CTGAAG 2 cut(s) 1017, 1359
AcyI GRCGYC 1 cut(s) 208
AfaI GTAC 4 cut(s) 70, 198, 875, 970
AfiI CCNNNNNNNGG 1 cut(s) 1343
AgsI TTSAA 7 cut(s) 135, 959, 1090, 1135, 1193, 1253, 1519
AhlI ACTAGT 2 cut(s) 277, 703
AjiI CACGTC 1 cut(s) 586
AjnI CCWGG 1 cut(s) 49
AloI GAACNNNNNNTCC 4 cut(s) 425, 457, 1395, 1427
AluBI AGCT 4 cut(s) 710, 962, 1242, 1579
AluI AGCT 4 cut(s) 710, 962, 1242, 1579
AlwI GGATC 6 cut(s) 48, 61, 428, 441, 1565, 1570
AlwNI CAGNNNCTG 1 cut(s) 758
Ama87I CYCGRG 2 cut(s) 1214, 1452
Aor13HI TCCGGA 1 cut(s) 1573
AoxI GGCC 2 cut(s) 846, 886
ApeKI GCWGC 2 cut(s) 752, 1242
ApoI RAATTY 2 cut(s) 370, 953
ArsI GACNNNNNNTTYG 4 cut(s) 198, 230, 1064, 1096
AseI ATTAAT 3 cut(s) 359, 785, 1206
Asp700I GAANNNNTTC 1 cut(s) 1410
Asp718I GGTACC 1 cut(s) 196
AspS9I GGNCC 2 cut(s) 670, 846
AsuHPI GGTGA 2 cut(s) 256, 1403
AvaI CYCGRG 2 cut(s) 1214, 1452
AvaII GGWCC 1 cut(s) 670
BaeGI GKGCMC 1 cut(s) 591
BaeI ACNNNNGTAYC 2 cut(s) 1102, 1135
BalI TGGCCA 1 cut(s) 888
BamHI GGATCC 2 cut(s) 53, 433
BanI GGYRCC 2 cut(s) 196, 1346
BbsI GAAGAC 1 cut(s) 1013
BbvI GCAGC 2 cut(s) 764, 1229
BccI CCATC 5 cut(s) 341, 695, 970, 1181, 1553
BciT130I CCWGG 1 cut(s) 51
BciVI GTATCC 4 cut(s) 390, 1001, 1180, 1537
BclI TGATCA 2 cut(s) 7, 1180
BcuI ACTAGT 2 cut(s) 277, 703
BfaI CTAG 4 cut(s) 278, 704, 965, 1580
BfmI CTRYAG 1 cut(s) 1160
BfuI GTATCC 4 cut(s) 390, 1001, 1180, 1537
BglII AGATCT 2 cut(s) 535, 1322
BisI GCNGC 4 cut(s) 753, 1243, 1541, 1544
BlsI GCNGC 4 cut(s) 754, 1244, 1542, 1545
Bme1390I CCNGG 1 cut(s) 51
Bme18I GGWCC 1 cut(s) 670
BmeT110I CYCGRG 2 cut(s) 1214, 1452
BmgBI CACGTC 1 cut(s) 586
BmgT120I GGNCC 2 cut(s) 670, 846
BmiI GGNNCC 4 cut(s) 55, 198, 435, 1348
BmrFI CCNGG 1 cut(s) 51
BmrI ACTGGG 1 cut(s) 1110
BmsI GCATC 5 cut(s) 50, 550, 721, 1051, 1527
BmuI ACTGGG 1 cut(s) 1110
BpiI GAAGAC 1 cut(s) 1013
BpuEI CTTGAG 1 cut(s) 636
Bsa29I ATCGAT 1 cut(s) 462
BsaAI YACGTR 1 cut(s) 1525
BsaHI GRCGYC 1 cut(s) 208
BsaWI WCCGGW 1 cut(s) 1573
BsaXI ACNNNNNCTCC 4 cut(s) 575, 605, 1395, 1425
Bsc4I CCNNNNNNNGG 1 cut(s) 1343
Bse1I ACTGG 4 cut(s) 57, 763, 1105, 1220
Bse3DI GCAATG 1 cut(s) 518
BseAI TCCGGA 1 cut(s) 1573
BseBI CCWGG 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 462
BseGI GGATG 6 cut(s) 511, 687, 981, 1111, 1173, 1352
BseLI CCNNNNNNNGG 1 cut(s) 1343
BseMI GCAATG 1 cut(s) 518
BseMII CTCAG 3 cut(s) 99, 265, 578
BseNI ACTGG 4 cut(s) 57, 763, 1105, 1220
BseSI GKGCMC 1 cut(s) 591
BseXI GCAGC 2 cut(s) 764, 1229
BshFI GGCC 2 cut(s) 848, 888
BshNI GGYRCC 2 cut(s) 196, 1346
BshVI ATCGAT 1 cut(s) 462
BsiHKCI CYCGRG 2 cut(s) 1214, 1452
BsiSI CCGG 1 cut(s) 1574
BslFI GGGAC 2 cut(s) 219, 1537
BslI CCNNNNNNNGG 1 cut(s) 1343
BsmFI GGGAC 2 cut(s) 219, 1537
BsmI GAATGC 2 cut(s) 857, 1281
BsnI GGCC 2 cut(s) 848, 888
BsoBI CYCGRG 2 cut(s) 1214, 1452
Bsp1286I GDGCHC 1 cut(s) 591
Bsp13I TCCGGA 1 cut(s) 1573
Bsp1407I TGTACA 1 cut(s) 873
BspACI CCGC 3 cut(s) 346, 1540, 1543
BspANI GGCC 2 cut(s) 848, 888
BspCNI CTCAG 3 cut(s) 98, 264, 577
BspDI ATCGAT 1 cut(s) 462
BspEI TCCGGA 1 cut(s) 1573
BspLI GGNNCC 4 cut(s) 55, 198, 435, 1348
BspPI GGATC 6 cut(s) 48, 61, 428, 441, 1565, 1570
BspT107I GGYRCC 2 cut(s) 196, 1346
BsrDI GCAATG 1 cut(s) 518
BsrGI TGTACA 1 cut(s) 873
BsrI ACTGG 4 cut(s) 57, 763, 1105, 1220
BssNAI GTATAC 1 cut(s) 1585
BssNI GRCGYC 1 cut(s) 208
Bst1107I GTATAC 1 cut(s) 1585
Bst2UI CCWGG 1 cut(s) 51
Bst6I CTCTTC 2 cut(s) 1130, 1401
BstACI GRCGYC 1 cut(s) 208
BstAUI TGTACA 1 cut(s) 873
BstBAI YACGTR 1 cut(s) 1525
BstC8I GCNNGC 2 cut(s) 1345, 1498
BstDEI CTNAG 3 cut(s) 85, 251, 564
BstENI CCTNNNNNAGG 1 cut(s) 1341
BstF5I GGATG 6 cut(s) 511, 687, 981, 1111, 1173, 1352
BstMWI GCNNNNNNNGC 3 cut(s) 152, 854, 1340
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 2 cut(s) 1117, 1500
BstSCI CCNGG 1 cut(s) 49
BstSFI CTRYAG 1 cut(s) 1160
BstSLI GKGCMC 1 cut(s) 591
BstSNI TACGTA 1 cut(s) 1525
BstV1I GCAGC 2 cut(s) 764, 1229
BstV2I GAAGAC 1 cut(s) 1013
BstX2I RGATCY 4 cut(s) 53, 433, 535, 1322
BstYI RGATCY 4 cut(s) 53, 433, 535, 1322
BstZ17I GTATAC 1 cut(s) 1585
Bsu15I ATCGAT 1 cut(s) 462
BsuI GTATCC 4 cut(s) 390, 1001, 1180, 1537
BsuRI GGCC 2 cut(s) 848, 888
BsuTUI ATCGAT 1 cut(s) 462
BtrI CACGTC 1 cut(s) 586
BtsCI GGATG 6 cut(s) 511, 687, 981, 1111, 1173, 1352
BtsI GCAGTG 1 cut(s) 1023
BtsIMutI CAGTG 1 cut(s) 1023
Cac8I GCNNGC 2 cut(s) 1345, 1498
CaiI CAGNNNCTG 1 cut(s) 758
Cfr13I GGNCC 2 cut(s) 670, 846
ClaI ATCGAT 1 cut(s) 462
Csp6I GTAC 4 cut(s) 69, 197, 874, 969
CviAII CATG 8 cut(s) 212, 316, 871, 972, 1114, 1184, 1497, 1534
CviQI GTAC 4 cut(s) 69, 197, 874, 969
DdeI CTNAG 3 cut(s) 85, 251, 564
DraI TTTAAA 2 cut(s) 639, 829
EaeI YGGCCR 1 cut(s) 886
Eam1104I CTCTTC 2 cut(s) 1130, 1401
EarI CTCTTC 2 cut(s) 1130, 1401
Eco105I TACGTA 1 cut(s) 1525
Eco32I GATATC 4 cut(s) 622, 648, 658, 740
Eco47I GGWCC 1 cut(s) 670
Eco57I CTGAAG 2 cut(s) 1017, 1359
Eco88I CYCGRG 2 cut(s) 1214, 1452
EcoNI CCTNNNNNAGG 1 cut(s) 1341
EcoO109I RGGNCCY 1 cut(s) 670
EcoRII CCWGG 1 cut(s) 49
EcoRV GATATC 4 cut(s) 622, 648, 658, 740
FaeI CATG 8 cut(s) 215, 319, 874, 975, 1117, 1187, 1500, 1537
FaqI GGGAC 2 cut(s) 219, 1537
FatI CATG 8 cut(s) 211, 315, 870, 971, 1113, 1183, 1496, 1533
FauNDI CATATG 1 cut(s) 297
FbaI TGATCA 2 cut(s) 7, 1180
FblI GTMKAC 2 cut(s) 1227, 1584
Fnu4HI GCNGC 4 cut(s) 753, 1243, 1541, 1544
FokI GGATG 6 cut(s) 518, 674, 988, 1118, 1160, 1339
Fsp4HI GCNGC 4 cut(s) 753, 1243, 1541, 1544
FspBI CTAG 4 cut(s) 278, 704, 965, 1580
GluI GCNGC 4 cut(s) 753, 1243, 1541, 1544
HaeIII GGCC 2 cut(s) 848, 888
HapII CCGG 1 cut(s) 1574
Hin1I GRCGYC 1 cut(s) 208
Hin1II CATG 8 cut(s) 215, 319, 874, 975, 1117, 1187, 1500, 1537
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HinfI GANTC 4 cut(s) 97, 247, 568, 1600
HpaII CCGG 1 cut(s) 1574
HphI GGTGA 2 cut(s) 256, 1403
Hpy166II GTNNAC 5 cut(s) 120, 1072, 1228, 1373, 1585
Hpy188III TCNNGA 7 cut(s) 19, 572, 653, 817, 1123, 1214, 1574
Hpy8I GTNNAC 5 cut(s) 120, 1072, 1228, 1373, 1585
HpyAV CCTTC 6 cut(s) 59, 610, 683, 928, 1286, 1495
HpyCH4IV ACGT 5 cut(s) 208, 585, 765, 1378, 1524
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 854, 1340
HpyF3I CTNAG 3 cut(s) 85, 251, 564
HpySE526I ACGT 5 cut(s) 208, 585, 765, 1378, 1524
Hsp92I GRCGYC 1 cut(s) 208
Hsp92II CATG 8 cut(s) 215, 319, 874, 975, 1117, 1187, 1500, 1537
Kpn2I TCCGGA 1 cut(s) 1573
KpnI GGTACC 1 cut(s) 200
Ksp22I TGATCA 2 cut(s) 7, 1180
LmnI GCTCC 1 cut(s) 1576
Lsp1109I GCAGC 2 cut(s) 764, 1229
LweI GCATC 5 cut(s) 50, 550, 721, 1051, 1527
MaeI CTAG 4 cut(s) 278, 704, 965, 1580
MaeII ACGT 5 cut(s) 208, 585, 765, 1378, 1524
MaeIII GTNAC 1 cut(s) 280
MboII GAAGA 7 cut(s) 317, 674, 1010, 1018, 1147, 1181, 1418
MfeI CAATTG 2 cut(s) 225, 1266
MflI RGATCY 4 cut(s) 53, 433, 535, 1322
MhlI GDGCHC 1 cut(s) 591
MlsI TGGCCA 1 cut(s) 888
MluNI TGGCCA 1 cut(s) 888
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 4 cut(s) 618, 715, 817, 1554
Mox20I TGGCCA 1 cut(s) 888
MroI TCCGGA 1 cut(s) 1573
MroXI GAANNNNTTC 1 cut(s) 1410
MscI TGGCCA 1 cut(s) 888
MslI CAYNNNNRTG 1 cut(s) 558
Msp20I TGGCCA 1 cut(s) 888
MspI CCGG 1 cut(s) 1574
MspR9I CCNGG 1 cut(s) 51
MunI CAATTG 2 cut(s) 225, 1266
Mva1269I GAATGC 2 cut(s) 857, 1281
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 3 cut(s) 152, 854, 1340
NdeI CATATG 1 cut(s) 297
NlaIII CATG 8 cut(s) 215, 319, 874, 975, 1117, 1187, 1500, 1537
NlaIV GGNNCC 4 cut(s) 55, 198, 435, 1348
NmuCI GTSAC 1 cut(s) 280
NspI RCATGY 2 cut(s) 1117, 1500
PaeI GCATGC 1 cut(s) 1500
PaeR7I CTCGAG 1 cut(s) 1214
PcsI WCGNNNNNNNCGW 2 cut(s) 591, 1428
PctI GAATGC 2 cut(s) 857, 1281
PdmI GAANNNNTTC 1 cut(s) 1410
PfeI GAWTC 3 cut(s) 247, 568, 1600
PkrI GCNGC 4 cut(s) 754, 1244, 1542, 1545
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Ppu21I YACGTR 1 cut(s) 1525
PpuMI RGGWCCY 1 cut(s) 670
PshBI ATTAAT 3 cut(s) 359, 785, 1206
Psp1406I AACGTT 1 cut(s) 765
Psp5II RGGWCCY 1 cut(s) 670
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 4 cut(s) 55, 198, 435, 1348
PspPI GGNCC 2 cut(s) 670, 846
PspPPI RGGWCCY 1 cut(s) 670
PstNI CAGNNNCTG 1 cut(s) 758
PsuI RGATCY 4 cut(s) 53, 433, 535, 1322
RsaI GTAC 4 cut(s) 70, 198, 875, 970
RsaNI GTAC 4 cut(s) 69, 197, 874, 969
RseI CAYNNNNRTG 1 cut(s) 558
SatI GCNGC 4 cut(s) 753, 1243, 1541, 1544
Sau96I GGNCC 2 cut(s) 670, 846
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 1 cut(s) 591
SfaNI GCATC 5 cut(s) 50, 550, 721, 1051, 1527
SfcI CTRYAG 1 cut(s) 1160
Sfr274I CTCGAG 1 cut(s) 1214
SinI GGWCC 1 cut(s) 670
SlaI CTCGAG 1 cut(s) 1214
SmiMI CAYNNNNRTG 1 cut(s) 558
SmlI CTYRAG 2 cut(s) 651, 1214
SmoI CTYRAG 2 cut(s) 651, 1214
SnaBI TACGTA 1 cut(s) 1525
SpeI ACTAGT 2 cut(s) 277, 703
SphI GCATGC 1 cut(s) 1500
SsiI CCGC 3 cut(s) 346, 1540, 1543
SspI AATATT 1 cut(s) 176
SspMI CTAG 4 cut(s) 278, 704, 965, 1580
StyD4I CCNGG 1 cut(s) 49
TaiI ACGT 5 cut(s) 211, 588, 768, 1381, 1527
TaqI TCGA 6 cut(s) 240, 462, 603, 666, 1215, 1565
TaqII GACCGA 1 cut(s) 1025
TatI WGTACW 1 cut(s) 873
TauI GCSGC 2 cut(s) 1543, 1546
TfiI GAWTC 3 cut(s) 247, 568, 1600
TscAI CASTG 1 cut(s) 1023
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 2 cut(s) 752, 1242
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 5 cut(s) 448, 740, 762, 1122, 1376
TspGWI ACGGA 3 cut(s) 86, 280, 1358
TspRI CASTG 1 cut(s) 1023
VpaK11BI GGWCC 1 cut(s) 670
VspI ATTAAT 3 cut(s) 359, 785, 1206
XagI CCTNNNNNAGG 1 cut(s) 1341
XapI RAATTY 2 cut(s) 370, 953
XceI RCATGY 2 cut(s) 1117, 1500
XhoI CTCGAG 1 cut(s) 1214
XmiI GTMKAC 2 cut(s) 1227, 1584
XmnI GAANNNNTTC 1 cut(s) 1410
XspI CTAG 4 cut(s) 278, 704, 965, 1580
ZraI GACGTC 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.