Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003689

Physical Location & Seq

Genomic Coordinates Reverse (-)

10511357 .. 10511917

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG062700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTCTCTTGAGCCGCTGGTACTCCCGCAGCATAGCTGCATTTTCTATCCACTTAGCGTAATTGATCGGATGCTCATCGTTGTAGAAGGTGAAATTACAGTGACTAAGACGACTTACAATGAAGGAAAAAAAGAAACGGAGAGAGGCGATGTTGAAAGAATGATAAAGAAACACGGTGTCATTGGGGAAGAGCTTCTGACCTGGGCAAACCCCACTGCCCCTGAGCTGAGGCATCCTACTATCTTGGAGAAATATGTAGAATGTCCTACAAAAGTAGAAGCCTTTGCTCTCACAAAGGAGGGATTGGAAAGTGTGGTCGCCTACTATACAGATGGAATCAACAAGTTTGAGCAGTTGGAGAAGGGCAGAGATGGTGTGGCAGATACTGAGGGTGCATCGAGATCCACTACCACCATTGACCAGCTTATCCAGCTCCAGAGTGACATGGTTCAACAGCATCGTGATGAAATGGCTAATCTGGGACGGAGATTGGATGAGATGGCTGCATTTTTGTCCAGAATGGGATATCCTGCAGGCACATCTCCTCCTCCTGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.74

Weight (kDa)

5.0

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05120
rosa_chinensis	RchiOBHm_Chr1g0324611 RchiOBHm_Chr5g0014651 RchiOBHm_Chr5g0014741
rosa_laevigata	RLG00000030187 RLG00000032136 RLG00000032137
rosa_multiflora	Rmu_sc0003893.1_g000002 Rmu_sc0003893.1_g000003 Rmu_sc0003893.1_g000007 Rmu_sc0013610.1_g000012
rosa_roxburghii	Rroxscaffold_159G00432980 Rroxscaffold_159G00432990 Rroxscaffold_1G00061790 Rroxscaffold_4G00325310 Rroxscaffold_4G00325330
rosa_rugosa	Rorug01G0047100.1 Rorug01G0047300 Rorug05G0020400 Rorug05G0020500
rosa_samantha	Rh1AG062700 Rh1AG062900 Rh1BG053100 Rh1CG064800 Rh1DG068900 Rh1DG069800 Rh5AG115900 Rh5BG112300 Rh5BG112800 Rh5CG124400 Rh7BG358300
rosa_wichuraiana	Rw1G005330 Rw5G009990 Rw5G010000 Rw5G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	14, 26
AclWI	GGATC	1 cut(s)	396
AfaI	GTAC	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	155, 452
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	6 cut(s)	36, 193, 226, 424, 433, 557
AluI	AGCT	6 cut(s)	36, 193, 226, 424, 433, 557
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	396
AlwNI	CAGNNNCTG	1 cut(s)	386
ApeKI	GCWGC	4 cut(s)	28, 36, 503, 554
Asp700I	GAANNNNTTC	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	101
BbvCI	CCTCAGC	1 cut(s)	227
BbvI	GCAGC	3 cut(s)	23, 40, 490
BccI	CCATC	3 cut(s)	326, 365, 493
BciT130I	CCWGG	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	2 cut(s)	531, 552
BisI	GCNGC	5 cut(s)	14, 29, 37, 504, 555
BlsI	GCNGC	5 cut(s)	15, 30, 38, 505, 556
Bme1390I	CCNGG	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	202
BmsI	GCATC	4 cut(s)	60, 241, 404, 466
BpmI	CTGGAG	1 cut(s)	419
Bpu10I	CCTNAGC	2 cut(s)	222, 227
BpuEI	CTTGAG	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	201
BsaXI	ACNNNNNCTCC	2 cut(s)	529, 559
Bse8I	GATNNNNATC	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	3 cut(s)	75, 232, 499
BseJI	GATNNNNATC	1 cut(s)	74
BseMII	CTCAG	3 cut(s)	213, 218, 378
BseRI	GAGGAG	2 cut(s)	534, 537
BseXI	GCAGC	3 cut(s)	23, 40, 490
BslFI	GGGAC	1 cut(s)	495
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	495
Bsp143I	GATC	2 cut(s)	64, 401
BspACI	CCGC	2 cut(s)	14, 26
BspCNI	CTCAG	3 cut(s)	214, 219, 379
BspMAI	CTGCAG	2 cut(s)	535, 556
BspPI	GGATC	1 cut(s)	396
BspQI	GCTCTTC	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	2 cut(s)	64, 401
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	2 cut(s)	100, 176
Bst6I	CTCTTC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	5 cut(s)	53, 105, 222, 227, 387
BstF5I	GGATG	3 cut(s)	75, 232, 499
BstKTI	GATC	2 cut(s)	67, 404
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	64, 401
BstMWI	GCNNNNNNNGC	1 cut(s)	430
BstNI	CCWGG	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	200
BstSFI	CTRYAG	2 cut(s)	531, 552
BstV1I	GCAGC	3 cut(s)	23, 40, 490
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	3 cut(s)	75, 232, 499
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	2 cut(s)	105, 213
Cac8I	GCNNGC	1 cut(s)	535
CaiI	CAGNNNCTG	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	1 cut(s)	445
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	5 cut(s)	53, 105, 222, 227, 387
DpnI	GATC	2 cut(s)	66, 403
DpnII	GATC	2 cut(s)	64, 401
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	200
EcoRV	GATATC	1 cut(s)	527
FaeI	CATG	1 cut(s)	448
FaiI	YATR	4 cut(s)	33, 255, 327, 446
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	1 cut(s)	444
FauI	CCCGC	1 cut(s)	33
Fnu4HI	GCNGC	5 cut(s)	14, 29, 37, 504, 555
FokI	GGATG	3 cut(s)	82, 219, 506
Fsp4HI	GCNGC	5 cut(s)	14, 29, 37, 504, 555
GluI	GCNGC	5 cut(s)	14, 29, 37, 504, 555
GsuI	CTGGAG	1 cut(s)	419
Hin1II	CATG	1 cut(s)	448
HinfI	GANTC	1 cut(s)	336
HphI	GGTGA	1 cut(s)	101
Hpy188I	TCNGA	2 cut(s)	69, 198
Hpy188III	TCNNGA	5 cut(s)	8, 399, 436, 461, 516
HpyAV	CCTTC	3 cut(s)	80, 116, 355
HpyCH4III	ACNGT	2 cut(s)	100, 176
HpyCH4V	TGCA	5 cut(s)	39, 395, 506, 533, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	430
HpyF3I	CTNAG	5 cut(s)	53, 105, 222, 227, 387
Hsp92II	CATG	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	64, 401
LguI	GCTCTTC	1 cut(s)	183
LmnI	GCTCC	1 cut(s)	438
Lsp1109I	GCAGC	3 cut(s)	23, 40, 490
LweI	GCATC	4 cut(s)	60, 241, 404, 466
MaeIII	GTNAC	2 cut(s)	100, 440
MalI	GATC	2 cut(s)	66, 403
MboI	GATC	2 cut(s)	64, 401
MboII	GAAGA	1 cut(s)	200
MflI	RGATCY	1 cut(s)	401
MluCI	AATT	2 cut(s)	60, 93
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	6 cut(s)	137, 222, 292, 382, 555, 558
MroXI	GAANNNNTTC	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	1 cut(s)	430
NdeII	GATC	2 cut(s)	64, 401
NlaIII	CATG	1 cut(s)	448
NmuCI	GTSAC	2 cut(s)	100, 440
PciSI	GCTCTTC	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	336
PkrI	GCNGC	5 cut(s)	15, 30, 38, 505, 556
Psp6I	CCWGG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	200
PstI	CTGCAG	2 cut(s)	535, 556
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	401
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	462
SapI	GCTCTTC	1 cut(s)	183
SatI	GCNGC	5 cut(s)	14, 29, 37, 504, 555
Sau3AI	GATC	2 cut(s)	64, 401
SbfI	CCTGCAGG	1 cut(s)	535
ScrFI	CCNGG	1 cut(s)	202
SdaI	CCTGCAGG	1 cut(s)	535
SetI	ASST	8 cut(s)	38, 91, 195, 203, 228, 426, 435, 559
SfaNI	GCATC	4 cut(s)	60, 241, 404, 466
SfcI	CTRYAG	2 cut(s)	531, 552
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse8387I	CCTGCAGG	1 cut(s)	535
Sse9I	AATT	2 cut(s)	60, 93
SsiI	CCGC	2 cut(s)	14, 26
StyD4I	CCNGG	1 cut(s)	200
TaaI	ACNGT	2 cut(s)	100, 176
TaqI	TCGA	1 cut(s)	398
TasI	AATT	2 cut(s)	60, 93
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	336
TscAI	CASTG	2 cut(s)	105, 220
TseFI	GTSAC	2 cut(s)	100, 440
TseI	GCWGC	4 cut(s)	28, 36, 503, 554
Tsp45I	GTSAC	2 cut(s)	100, 440
TspDTI	ATGAA	2 cut(s)	135, 480
TspGWI	ACGGA	2 cut(s)	152, 499
TspRI	CASTG	2 cut(s)	105, 220
XmnI	GAANNNNTTC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.