Cyclic nucleotide-gated ion channel 1-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g05120 |
| rosa_chinensis | RchiOBHm_Chr1g0324611 RchiOBHm_Chr5g0014651 RchiOBHm_Chr5g0014741 |
| rosa_laevigata | RLG00000030187 RLG00000032136 RLG00000032137 |
| rosa_multiflora | Rmu_sc0003893.1_g000002 Rmu_sc0003893.1_g000003 Rmu_sc0003893.1_g000007 Rmu_sc0013610.1_g000012 |
| rosa_roxburghii | Rroxscaffold_159G00432980 Rroxscaffold_159G00432990 Rroxscaffold_1G00061790 Rroxscaffold_4G00325310 Rroxscaffold_4G00325330 |
| rosa_rugosa | Rorug01G0047100.1 Rorug01G0047300 Rorug05G0020400 Rorug05G0020500 |
| rosa_samantha | Rh1AG062700 Rh1AG062900 Rh1BG053100 Rh1CG064800 Rh1DG068900 Rh1DG069800 Rh5AG115900 Rh5BG112300 Rh5BG112800 Rh5CG124400 Rh7BG358300 |
| rosa_wichuraiana | Rw1G005330 Rw5G009990 Rw5G010000 Rw5G010010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1096 |
| AciI | CCGC | 2 cut(s) | 1278, 1456 |
| AclWI | GGATC | 4 cut(s) | 152, 311, 661, 1484 |
| AcoI | YGGCCR | 1 cut(s) | 1357 |
| AcsI | RAATTY | 2 cut(s) | 1145, 1436 |
| AcuI | CTGAAG | 1 cut(s) | 531 |
| AfaI | GTAC | 3 cut(s) | 126, 449, 1468 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1455 |
| AflIII | ACRYGT | 1 cut(s) | 1463 |
| AhlI | ACTAGT | 1 cut(s) | 1498 |
| AjiI | CACGTC | 1 cut(s) | 1132 |
| AluBI | AGCT | 2 cut(s) | 1197, 1348 |
| AluI | AGCT | 2 cut(s) | 1197, 1348 |
| AlwI | GGATC | 4 cut(s) | 152, 311, 661, 1484 |
| Ama87I | CYCGRG | 2 cut(s) | 334, 1377 |
| AoxI | GGCC | 1 cut(s) | 1357 |
| ApeKI | GCWGC | 2 cut(s) | 1280, 1453 |
| ApoI | RAATTY | 2 cut(s) | 1145, 1436 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1010, 1042 |
| AspLEI | GCGC | 1 cut(s) | 1097 |
| AsuC2I | CCSGG | 3 cut(s) | 335, 336, 1175 |
| AsuHPI | GGTGA | 3 cut(s) | 964, 1189, 1340 |
| AvaI | CYCGRG | 2 cut(s) | 334, 1377 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1107, 1139 |
| BbvI | GCAGC | 2 cut(s) | 1292, 1440 |
| BccI | CCATC | 6 cut(s) | 36, 74, 428, 598, 1127, 1178 |
| BceAI | ACGGC | 2 cut(s) | 1344, 1372 |
| BciVI | GTATCC | 1 cut(s) | 1126 |
| BcnI | CCSGG | 3 cut(s) | 335, 336, 1175 |
| BcuI | ACTAGT | 1 cut(s) | 1498 |
| BfaI | CTAG | 1 cut(s) | 1499 |
| BfuI | GTATCC | 1 cut(s) | 1126 |
| BglII | AGATCT | 2 cut(s) | 259, 895 |
| BisI | GCNGC | 3 cut(s) | 1281, 1454, 1457 |
| BlsI | GCNGC | 3 cut(s) | 1282, 1455, 1458 |
| Bme1390I | CCNGG | 3 cut(s) | 335, 336, 1175 |
| BmeT110I | CYCGRG | 2 cut(s) | 334, 1377 |
| BmgBI | CACGTC | 1 cut(s) | 1132 |
| BmrFI | CCNGG | 3 cut(s) | 335, 336, 1175 |
| BmsI | GCATC | 2 cut(s) | 493, 619 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 9, 41 |
| BpuMI | CCSGG | 3 cut(s) | 335, 336, 1175 |
| Bsa29I | ATCGAT | 1 cut(s) | 656 |
| BsaAI | YACGTR | 2 cut(s) | 1201, 1466 |
| BsaBI | GATNNNNATC | 1 cut(s) | 308 |
| BsaJI | CCNNGG | 2 cut(s) | 334, 1065 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1455 |
| Bse1I | ACTGG | 3 cut(s) | 179, 540, 1003 |
| Bse3DI | GCAATG | 2 cut(s) | 141, 153 |
| Bse8I | GATNNNNATC | 1 cut(s) | 308 |
| BseCI | ATCGAT | 1 cut(s) | 656 |
| BseDI | CCNNGG | 2 cut(s) | 334, 1065 |
| BseGI | GGATG | 9 cut(s) | 309, 375, 420, 590, 915, 1119, 1170, 1228, 1302 |
| BseJI | GATNNNNATC | 1 cut(s) | 308 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1455 |
| BseMI | GCAATG | 2 cut(s) | 141, 153 |
| BseMII | CTCAG | 1 cut(s) | 701 |
| BseNI | ACTGG | 3 cut(s) | 179, 540, 1003 |
| BseRI | GAGGAG | 3 cut(s) | 30, 884, 1202 |
| BseX3I | CGGCCG | 1 cut(s) | 1357 |
| BseXI | GCAGC | 2 cut(s) | 1292, 1440 |
| BsgI | GTGCAG | 1 cut(s) | 842 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1360 |
| BshFI | GGCC | 1 cut(s) | 1359 |
| BshVI | ATCGAT | 1 cut(s) | 656 |
| BsiEI | CGRYCG | 1 cut(s) | 1360 |
| BsiHKCI | CYCGRG | 2 cut(s) | 334, 1377 |
| BsiSI | CCGG | 3 cut(s) | 335, 1175, 1220 |
| BsiWI | CGTACG | 1 cut(s) | 1466 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1455 |
| BsnI | GGCC | 1 cut(s) | 1359 |
| BsoBI | CYCGRG | 2 cut(s) | 334, 1377 |
| Bsp143I | GATC | 9 cut(s) | 157, 248, 259, 298, 303, 653, 895, 1179, 1489 |
| BspACI | CCGC | 2 cut(s) | 1278, 1456 |
| BspANI | GGCC | 1 cut(s) | 1359 |
| BspCNI | CTCAG | 1 cut(s) | 702 |
| BspDI | ATCGAT | 1 cut(s) | 656 |
| BspHI | TCATGA | 2 cut(s) | 295, 1107 |
| BspPI | GGATC | 4 cut(s) | 152, 311, 661, 1484 |
| BspQI | GCTCTTC | 3 cut(s) | 188, 1294, 1338 |
| BsrDI | GCAATG | 2 cut(s) | 141, 153 |
| BsrI | ACTGG | 3 cut(s) | 179, 540, 1003 |
| BssECI | CCNNGG | 2 cut(s) | 334, 1065 |
| BssMI | GATC | 9 cut(s) | 157, 248, 259, 298, 303, 653, 895, 1179, 1489 |
| Bst4CI | ACNGT | 3 cut(s) | 78, 235, 1048 |
| Bst6I | CTCTTC | 3 cut(s) | 188, 1294, 1338 |
| BstBAI | YACGTR | 2 cut(s) | 1201, 1466 |
| BstC8I | GCNNGC | 3 cut(s) | 791, 1253, 1285 |
| BstDEI | CTNAG | 3 cut(s) | 362, 710, 1021 |
| BstDSI | CCRYGG | 1 cut(s) | 1065 |
| BstEII | GGTNACC | 1 cut(s) | 1444 |
| BstF5I | GGATG | 9 cut(s) | 309, 375, 420, 590, 915, 1119, 1170, 1228, 1302 |
| BstHHI | GCGC | 1 cut(s) | 1097 |
| BstKTI | GATC | 9 cut(s) | 160, 251, 262, 301, 306, 656, 898, 1182, 1492 |
| BstMBI | GATC | 9 cut(s) | 157, 248, 259, 298, 303, 653, 895, 1179, 1489 |
| BstMCI | CGRYCG | 1 cut(s) | 1360 |
| BstNSI | RCATGY | 1 cut(s) | 495 |
| BstPI | GGTNACC | 1 cut(s) | 1444 |
| BstSCI | CCNGG | 3 cut(s) | 333, 334, 1173 |
| BstV1I | GCAGC | 2 cut(s) | 1292, 1440 |
| BstX2I | RGATCY | 3 cut(s) | 157, 259, 895 |
| BstYI | RGATCY | 3 cut(s) | 157, 259, 895 |
| BstZI | CGGCCG | 1 cut(s) | 1357 |
| Bsu15I | ATCGAT | 1 cut(s) | 656 |
| BsuI | GTATCC | 1 cut(s) | 1126 |
| BsuRI | GGCC | 1 cut(s) | 1359 |
| BsuTUI | ATCGAT | 1 cut(s) | 656 |
| BtgI | CCRYGG | 1 cut(s) | 1065 |
| BtrI | CACGTC | 1 cut(s) | 1132 |
| BtsCI | GGATG | 9 cut(s) | 309, 375, 420, 590, 915, 1119, 1170, 1228, 1302 |
| BtsIMutI | CAGTG | 2 cut(s) | 996, 1044 |
| Cac8I | GCNNGC | 3 cut(s) | 791, 1253, 1285 |
| CciI | TCATGA | 2 cut(s) | 295, 1107 |
| CfoI | GCGC | 1 cut(s) | 1097 |
| Cfr9I | CCCGGG | 1 cut(s) | 334 |
| ClaI | ATCGAT | 1 cut(s) | 656 |
| Csp6I | GTAC | 3 cut(s) | 125, 448, 1467 |
| CviAII | CATG | 8 cut(s) | 6, 114, 138, 296, 492, 811, 1108, 1450 |
| CviJI | RGCY | 8 cut(s) | 518, 789, 1197, 1219, 1287, 1348, 1359, 1409 |
| CviKI_1 | RGCY | 8 cut(s) | 518, 789, 1197, 1219, 1287, 1348, 1359, 1409 |
| CviQI | GTAC | 3 cut(s) | 125, 448, 1467 |
| DdeI | CTNAG | 3 cut(s) | 362, 710, 1021 |
| DpnI | GATC | 9 cut(s) | 159, 250, 261, 300, 305, 655, 897, 1181, 1491 |
| DpnII | GATC | 9 cut(s) | 157, 248, 259, 298, 303, 653, 895, 1179, 1489 |
| EaeI | YGGCCR | 1 cut(s) | 1357 |
| EagI | CGGCCG | 1 cut(s) | 1357 |
| Eam1104I | CTCTTC | 3 cut(s) | 188, 1294, 1338 |
| EarI | CTCTTC | 3 cut(s) | 188, 1294, 1338 |
| EclXI | CGGCCG | 1 cut(s) | 1357 |
| Eco32I | GATATC | 2 cut(s) | 391, 474 |
| Eco52I | CGGCCG | 1 cut(s) | 1357 |
| Eco57I | CTGAAG | 1 cut(s) | 531 |
| Eco88I | CYCGRG | 2 cut(s) | 334, 1377 |
| Eco91I | GGTNACC | 1 cut(s) | 1444 |
| EcoO65I | GGTNACC | 1 cut(s) | 1444 |
| EcoRI | GAATTC | 1 cut(s) | 1145 |
| EcoRV | GATATC | 2 cut(s) | 391, 474 |
| EcoT22I | ATGCAT | 1 cut(s) | 143 |
| FaeI | CATG | 8 cut(s) | 9, 117, 141, 299, 495, 814, 1111, 1453 |
| FatI | CATG | 8 cut(s) | 5, 113, 137, 295, 491, 810, 1107, 1449 |
| Fnu4HI | GCNGC | 3 cut(s) | 1281, 1454, 1457 |
| FokI | GGATG | 9 cut(s) | 296, 382, 407, 577, 922, 1106, 1157, 1235, 1289 |
| Fsp4HI | GCNGC | 3 cut(s) | 1281, 1454, 1457 |
| FspBI | CTAG | 1 cut(s) | 1499 |
| FspI | TGCGCA | 1 cut(s) | 1096 |
| GlaI | GCGC | 1 cut(s) | 1096 |
| GluI | GCNGC | 3 cut(s) | 1281, 1454, 1457 |
| HaeIII | GGCC | 1 cut(s) | 1359 |
| HapII | CCGG | 3 cut(s) | 335, 1175, 1220 |
| HhaI | GCGC | 1 cut(s) | 1097 |
| Hin1II | CATG | 8 cut(s) | 9, 117, 141, 299, 495, 814, 1111, 1453 |
| Hin6I | GCGC | 1 cut(s) | 1095 |
| HinP1I | GCGC | 1 cut(s) | 1095 |
| HinfI | GANTC | 3 cut(s) | 82, 326, 842 |
| HpaII | CCGG | 3 cut(s) | 335, 1175, 1220 |
| HphI | GGTGA | 3 cut(s) | 964, 1189, 1340 |
| Hpy166II | GTNNAC | 4 cut(s) | 74, 1018, 1270, 1504 |
| Hpy188I | TCNGA | 7 cut(s) | 33, 87, 303, 325, 331, 437, 972 |
| Hpy188III | TCNNGA | 7 cut(s) | 296, 626, 866, 940, 1108, 1127, 1493 |
| Hpy8I | GTNNAC | 4 cut(s) | 74, 1018, 1270, 1504 |
| HpyAV | CCTTC | 5 cut(s) | 88, 644, 1075, 1133, 1420 |
| HpyCH4III | ACNGT | 3 cut(s) | 78, 235, 1048 |
| HpyCH4IV | ACGT | 5 cut(s) | 402, 1131, 1200, 1315, 1465 |
| HpyCH4V | TGCA | 5 cut(s) | 131, 141, 146, 599, 823 |
| HpyF3I | CTNAG | 3 cut(s) | 362, 710, 1021 |
| HpySE526I | ACGT | 5 cut(s) | 402, 1131, 1200, 1315, 1465 |
| Hsp92II | CATG | 8 cut(s) | 9, 117, 141, 299, 495, 814, 1111, 1453 |
| HspAI | GCGC | 1 cut(s) | 1095 |
| Kzo9I | GATC | 9 cut(s) | 157, 248, 259, 298, 303, 653, 895, 1179, 1489 |
| LguI | GCTCTTC | 3 cut(s) | 188, 1294, 1338 |
| LmnI | GCTCC | 2 cut(s) | 437, 1084 |
| Lsp1109I | GCAGC | 2 cut(s) | 1292, 1440 |
| LweI | GCATC | 2 cut(s) | 493, 619 |
| MaeI | CTAG | 1 cut(s) | 1499 |
| MaeII | ACGT | 5 cut(s) | 402, 1131, 1200, 1315, 1465 |
| MaeIII | GTNAC | 4 cut(s) | 725, 740, 1311, 1444 |
| MalI | GATC | 9 cut(s) | 159, 250, 261, 300, 305, 655, 897, 1181, 1491 |
| MboI | GATC | 9 cut(s) | 157, 248, 259, 298, 303, 653, 895, 1179, 1489 |
| MboII | GAAGA | 7 cut(s) | 50, 205, 537, 905, 1151, 1281, 1355 |
| MflI | RGATCY | 3 cut(s) | 157, 259, 895 |
| MluCI | AATT | 9 cut(s) | 291, 396, 523, 715, 768, 1145, 1257, 1296, 1436 |
| MlyI | GAGTC | 1 cut(s) | 320 |
| MnlI | CCTC | 8 cut(s) | 8, 325, 360, 526, 853, 862, 1115, 1180 |
| Mph1103I | ATGCAT | 1 cut(s) | 143 |
| MseI | TTAA | 4 cut(s) | 224, 879, 1160, 1513 |
| MslI | CAYNNNNRTG | 4 cut(s) | 112, 146, 348, 1175 |
| MspI | CCGG | 3 cut(s) | 335, 1175, 1220 |
| MspR9I | CCNGG | 3 cut(s) | 335, 336, 1175 |
| NciI | CCSGG | 3 cut(s) | 335, 336, 1175 |
| NdeII | GATC | 9 cut(s) | 157, 248, 259, 298, 303, 653, 895, 1179, 1489 |
| NlaIII | CATG | 8 cut(s) | 9, 117, 141, 299, 495, 814, 1111, 1453 |
| NmuCI | GTSAC | 2 cut(s) | 725, 1311 |
| NsbI | TGCGCA | 1 cut(s) | 1096 |
| NsiI | ATGCAT | 1 cut(s) | 143 |
| NspI | RCATGY | 1 cut(s) | 495 |
| PagI | TCATGA | 2 cut(s) | 295, 1107 |
| PciSI | GCTCTTC | 3 cut(s) | 188, 1294, 1338 |
| PfeI | GAWTC | 2 cut(s) | 82, 842 |
| Pfl23II | CGTACG | 1 cut(s) | 1466 |
| PkrI | GCNGC | 3 cut(s) | 1282, 1455, 1458 |
| PleI | GAGTC | 1 cut(s) | 320 |
| PpsI | GAGTC | 1 cut(s) | 320 |
| Ppu21I | YACGTR | 2 cut(s) | 1201, 1466 |
| PspEI | GGTNACC | 1 cut(s) | 1444 |
| PspLI | CGTACG | 1 cut(s) | 1466 |
| PsuI | RGATCY | 3 cut(s) | 157, 259, 895 |
| RsaI | GTAC | 3 cut(s) | 126, 449, 1468 |
| RsaNI | GTAC | 3 cut(s) | 125, 448, 1467 |
| RseI | CAYNNNNRTG | 4 cut(s) | 112, 146, 348, 1175 |
| SapI | GCTCTTC | 3 cut(s) | 188, 1294, 1338 |
| SaqAI | TTAA | 4 cut(s) | 224, 879, 1160, 1513 |
| SatI | GCNGC | 3 cut(s) | 1281, 1454, 1457 |
| Sau3AI | GATC | 9 cut(s) | 157, 248, 259, 298, 303, 653, 895, 1179, 1489 |
| SchI | GAGTC | 1 cut(s) | 320 |
| ScrFI | CCNGG | 3 cut(s) | 335, 336, 1175 |
| SfaNI | GCATC | 2 cut(s) | 493, 619 |
| SmaI | CCCGGG | 1 cut(s) | 336 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 112, 146, 348, 1175 |
| SpeI | ACTAGT | 1 cut(s) | 1498 |
| Sse9I | AATT | 9 cut(s) | 291, 396, 523, 715, 768, 1145, 1257, 1296, 1436 |
| SsiI | CCGC | 2 cut(s) | 1278, 1456 |
| SspI | AATATT | 2 cut(s) | 621, 978 |
| SspMI | CTAG | 1 cut(s) | 1499 |
| StyD4I | CCNGG | 3 cut(s) | 333, 334, 1173 |
| TaaI | ACNGT | 3 cut(s) | 78, 235, 1048 |
| TaiI | ACGT | 5 cut(s) | 405, 1134, 1203, 1318, 1468 |
| TaqI | TCGA | 5 cut(s) | 306, 656, 1207, 1373, 1475 |
| TasI | AATT | 9 cut(s) | 291, 396, 523, 715, 768, 1145, 1257, 1296, 1436 |
| TauI | GCSGC | 1 cut(s) | 1459 |
| TfiI | GAWTC | 2 cut(s) | 82, 842 |
| Tru1I | TTAA | 4 cut(s) | 224, 879, 1160, 1513 |
| Tru9I | TTAA | 4 cut(s) | 224, 879, 1160, 1513 |
| TscAI | CASTG | 2 cut(s) | 1003, 1051 |
| TseFI | GTSAC | 2 cut(s) | 725, 1311 |
| TseI | GCWGC | 2 cut(s) | 1280, 1453 |
| Tsp45I | GTSAC | 2 cut(s) | 725, 1311 |
| TspDTI | ATGAA | 7 cut(s) | 284, 366, 386, 906, 1124, 1158, 1281 |
| TspMI | CCCGGG | 1 cut(s) | 334 |
| TspRI | CASTG | 2 cut(s) | 1003, 1051 |
| XapI | RAATTY | 2 cut(s) | 1145, 1436 |
| XceI | RCATGY | 1 cut(s) | 495 |
| XmaI | CCCGGG | 1 cut(s) | 334 |
| XspI | CTAG | 1 cut(s) | 1499 |
| Zsp2I | ATGCAT | 1 cut(s) | 143 |