Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010760

Physical Location & Seq

Genomic Coordinates Reverse (-)

83838500 .. 83844568

Gene Structure 6069 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00061780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTACGAGGTGATGGCTAGCAAGACAAAAATATACATCGTTTTGGAGTTTGTGACTGGTGGGGAACTATTTGACAAAATTGCAAGTAAAGGAAGATTGAAAGAAGATGAAGCAAGGAAGTATTTTCAGCAGCTTATAAATGCAGTGGATTACTGCCATAGCAGAGGTGTTTTCCATAGAGACCTGAAGCCCGAGAATTTGCTGCTGGATGCTAATGGAGTGCTTAAAGTTTCAGATTTTGGGCTCAGTGCGCTGCCTCAGCAAGTTCGAGAAGATGGATTACTTCACACAACATGTGGGACACCAAATTATGTTGCCCCTGAGGTCATCAACAACAAAGGGTATGATGGAGCAAAGGCTGATCTATGGTCTTGTGGTGTGATTCTTTATGTCTTGATGGCTGGCTATCTGCCTTTTGAAGATTCCAATCTCATGTCATTATATAAAAAGATATTCAAGGCTGAGTTCTCATGTCCTCCATGGTTCTCCTCAAGTGCAAAGAAGCTAATTAAGAGAATCTTGGACCCTAACCCCTTGACACGAATTACAATTGCTGAGGTCATTGAAAATGAGTGGTTCAAGAAAGGGTATAAAGCACCTAATTTTGAACAAGTTGATGTTAGTCTCGATGATGTGGACGCGATATTCAATGATTCAGGGGATACTCAGAACCTTGTAGTTGAGAGGCGAGAGGAACGACATGTGCCTGTTACCATGAATGCCTTTGAGCTTATCTCTACATCTCAGGGCCTGAATCTCAATAGTCTTTTTGAGAAACAGATGGAACTTGTTAAAAGAGAAACAAGATTCACATCCAAACGTCCAGCTAATGAGATTATTTCTAAAATTGAGGAAGCTGCAGCACCATTGGGTTTTGGTGTGAAGAAAAATAATTTTAAGTTGAAGCTTCAAGGTGAAAAAACTGGACGTAAAGGTCATCTATCAGTTGCAACAGAGATTTTTGAGGTGGCCCCTTCACTCTACATGGTTGAAGTCCGCAAGTCAGGGGGGGAGACACACTGGAATTTCACAATTTCTACAAGAACCTTTCCACGGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0007154 GO:0007165 GO:0007584 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009536 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0010107 GO:0010118 GO:0015672 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0030001 GO:0031667 GO:0034220 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0071704 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

353

Amino Acids

39.91

Weight (kDa)

7.63

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 193	1.1e-57	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	2 - 189	4.2e-26	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	29 - 143	1.3e-06	Kinase-like
NAF	PF03822	236 - 296	6.2e-23	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30270 AT1G30270 AT1G30270
fragaria_vesca	FvH4_3g05110 FvH4_3g05110 FvH4_3g05110
malus_domestica	MD05G1280400.v1.1 MD10G1258700.v1.1
prunus_persica	Prupe.4G085000_v2.0.a1 Prupe.4G085000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014761
rosa_laevigata	RLG00000032138
rosa_multiflora	Rmu_co8519507.1_g000001 Rmu_sc0017371.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061780 Rroxscaffold_3G00222800
rosa_rugosa	Rorug05G0020500
rosa_samantha	Rh5AG116100 Rh5BG112900
rosa_wichuraiana	Rw5G010020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
AasI	GACNNNNNNGTC	1 cut(s)	933
AccII	CGCG	1 cut(s)	641
AciI	CCGC	1 cut(s)	997
AcsI	RAATTY	2 cut(s)	196, 1024
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	1053
AflIII	ACRYGT	2 cut(s)	293, 700
AluBI	AGCT	6 cut(s)	133, 505, 730, 827, 857, 907
AluI	AGCT	6 cut(s)	133, 505, 730, 827, 857, 907
Alw26I	GTCTC	3 cut(s)	174, 629, 1007
AlwNI	CAGNNNCTG	1 cut(s)	751
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	2 cut(s)	748, 969
ApeKI	GCWGC	5 cut(s)	130, 202, 253, 857, 860
ApoI	RAATTY	2 cut(s)	196, 1024
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	3 cut(s)	523, 748, 970
AsuHPI	GGTGA	2 cut(s)	22, 926
AsuNHI	GCTAGC	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	523
AxyI	CCTNAGG	1 cut(s)	321
BanII	GRGCYC	1 cut(s)	246
BarI	GAAGNNNNNNTAC	2 cut(s)	264, 296
BbvCI	CCTCAGC	2 cut(s)	258, 555
BbvI	GCAGC	5 cut(s)	142, 189, 240, 844, 872
BccI	CCATC	5 cut(s)	7, 269, 341, 391, 775
BciVI	GTATCC	1 cut(s)	655
BcoDI	GTCTC	3 cut(s)	174, 629, 1007
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	858
BfuI	GTATCC	1 cut(s)	655
BisI	GCNGC	5 cut(s)	131, 203, 254, 858, 861
BlsI	GCNGC	5 cut(s)	132, 204, 255, 859, 862
Bme18I	GGWCC	1 cut(s)	523
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	3 cut(s)	523, 748, 970
BmiI	GGNNCC	2 cut(s)	525, 972
BmsI	GCATC	1 cut(s)	199
BmtI	GCTAGC	1 cut(s)	21
BplI	GAGNNNNNCTC	2 cut(s)	719, 751
Bpu10I	CCTNAGC	2 cut(s)	258, 555
BpuEI	CTTGAG	1 cut(s)	475
BsaBI	GATNNNNATC	2 cut(s)	426, 811
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	479, 1052
Bsc4I	CCNNNNNNNGG	1 cut(s)	1053
Bse1I	ACTGG	3 cut(s)	61, 928, 1025
Bse21I	CCTNAGG	1 cut(s)	321
Bse8I	GATNNNNATC	2 cut(s)	426, 811
BseDI	CCNNGG	2 cut(s)	479, 1052
BseGI	GGATG	2 cut(s)	214, 812
BseJI	GATNNNNATC	2 cut(s)	426, 811
BseLI	CCNNNNNNNGG	1 cut(s)	1053
BseMII	CTCAG	7 cut(s)	259, 272, 312, 453, 546, 680, 758
BseNI	ACTGG	3 cut(s)	61, 928, 1025
BseRI	GAGGAG	1 cut(s)	478
BseXI	GCAGC	5 cut(s)	142, 189, 240, 844, 872
Bsh1236I	CGCG	1 cut(s)	641
BshFI	GGCC	2 cut(s)	750, 971
BsiHKCI	CYCGRG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	1053
BsmAI	GTCTC	3 cut(s)	174, 629, 1007
BsmFI	GGGAC	1 cut(s)	313
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	2 cut(s)	750, 971
Bso31I	GGTCTC	1 cut(s)	174
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	361
Bsp19I	CCATGG	1 cut(s)	479
BspACI	CCGC	1 cut(s)	997
BspANI	GGCC	2 cut(s)	750, 971
BspCNI	CTCAG	7 cut(s)	258, 271, 313, 454, 547, 679, 757
BspFNI	CGCG	1 cut(s)	641
BspLI	GGNNCC	2 cut(s)	525, 972
BspMAI	CTGCAG	1 cut(s)	862
BspOI	GCTAGC	1 cut(s)	21
BspTNI	GGTCTC	1 cut(s)	174
BsrI	ACTGG	3 cut(s)	61, 928, 1025
BssECI	CCNNGG	2 cut(s)	479, 1052
BssMI	GATC	1 cut(s)	361
BssT1I	CCWWGG	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	19, 403
BstDEI	CTNAG	7 cut(s)	245, 258, 321, 462, 555, 666, 744
BstDSI	CCRYGG	2 cut(s)	479, 1052
BstF5I	GGATG	2 cut(s)	214, 812
BstFNI	CGCG	1 cut(s)	641
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	1 cut(s)	364
BstMAI	GTCTC	3 cut(s)	174, 629, 1007
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 259
BstNSI	RCATGY	2 cut(s)	297, 704
BstSFI	CTRYAG	1 cut(s)	858
BstUI	CGCG	1 cut(s)	641
BstV1I	GCAGC	5 cut(s)	142, 189, 240, 844, 872
Bsu36I	CCTNAGG	1 cut(s)	321
BsuI	GTATCC	1 cut(s)	655
BsuRI	GGCC	2 cut(s)	750, 971
BtgI	CCRYGG	2 cut(s)	479, 1052
BtsCI	GGATG	2 cut(s)	214, 812
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	3 cut(s)	150, 253, 1018
Cac8I	GCNNGC	2 cut(s)	19, 403
CaiI	CAGNNNCTG	1 cut(s)	751
CfoI	GCGC	1 cut(s)	253
Cfr13I	GGNCC	3 cut(s)	523, 748, 970
CseI	GACGC	1 cut(s)	647
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	7 cut(s)	294, 433, 471, 480, 701, 715, 985
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	7 cut(s)	245, 258, 321, 462, 555, 666, 744
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
DrdI	GACNNNNNNGTC	1 cut(s)	933
DseDI	GACNNNNNNGTC	1 cut(s)	933
Eco130I	CCWWGG	1 cut(s)	479
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	523
Eco57I	CTGAAG	1 cut(s)	206
Eco81I	CCTNAGG	1 cut(s)	321
Eco88I	CYCGRG	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	748
EcoT14I	CCWWGG	1 cut(s)	479
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	479
FaeI	CATG	7 cut(s)	297, 436, 474, 483, 704, 718, 988
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	7 cut(s)	293, 432, 470, 479, 700, 714, 984
Fnu4HI	GCNGC	5 cut(s)	131, 203, 254, 858, 861
FokI	GGATG	2 cut(s)	221, 799
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	5 cut(s)	131, 203, 254, 858, 861
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	5 cut(s)	131, 203, 254, 858, 861
HaeIII	GGCC	2 cut(s)	750, 971
HgaI	GACGC	1 cut(s)	647
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	7 cut(s)	297, 436, 474, 483, 704, 718, 988
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HindIII	AAGCTT	1 cut(s)	905
HinfI	GANTC	6 cut(s)	382, 422, 516, 653, 754, 807
HphI	GGTGA	2 cut(s)	22, 926
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	2 cut(s)	235, 669
Hpy188III	TCNNGA	4 cut(s)	269, 394, 580, 626
Hpy8I	GTNNAC	1 cut(s)	637
HpyAV	CCTTC	1 cut(s)	984
HpyCH4IV	ACGT	2 cut(s)	820, 928
HpyCH4V	TGCA	5 cut(s)	83, 143, 497, 860, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 259
HpyF3I	CTNAG	7 cut(s)	245, 258, 321, 462, 555, 666, 744
HpySE526I	ACGT	2 cut(s)	820, 928
Hsp92II	CATG	7 cut(s)	297, 436, 474, 483, 704, 718, 988
HspAI	GCGC	1 cut(s)	251
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	1 cut(s)	350
Lsp1109I	GCAGC	5 cut(s)	142, 189, 240, 844, 872
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	2 cut(s)	820, 928
MaeIII	GTNAC	2 cut(s)	52, 709
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	5 cut(s)	105, 116, 284, 431, 895
MfeI	CAATTG	1 cut(s)	549
MhlI	GDGCHC	1 cut(s)	246
MseI	TTAA	4 cut(s)	225, 510, 792, 897
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	724
MvnI	CGCG	1 cut(s)	641
MwoI	GCNNNNNNNGC	2 cut(s)	250, 259
NcoI	CCATGG	1 cut(s)	479
NdeII	GATC	1 cut(s)	361
NheI	GCTAGC	1 cut(s)	17
NlaIII	CATG	7 cut(s)	297, 436, 474, 483, 704, 718, 988
NlaIV	GGNNCC	2 cut(s)	525, 972
NmuCI	GTSAC	1 cut(s)	52
NspI	RCATGY	2 cut(s)	297, 704
PciI	ACATGT	2 cut(s)	293, 700
PctI	GAATGC	1 cut(s)	724
PfeI	GAWTC	6 cut(s)	382, 422, 516, 653, 754, 807
PkrI	GCNGC	5 cut(s)	132, 204, 255, 859, 862
PscI	ACATGT	2 cut(s)	293, 700
PsiI	TTATAA	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	525, 972
PspPI	GGNCC	3 cut(s)	523, 748, 970
PstI	CTGCAG	1 cut(s)	862
PstNI	CAGNNNCTG	1 cut(s)	751
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	4 cut(s)	225, 510, 792, 897
SatI	GCNGC	5 cut(s)	131, 203, 254, 858, 861
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	3 cut(s)	523, 748, 970
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	858
SinI	GGWCC	1 cut(s)	523
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
SsiI	CCGC	1 cut(s)	997
SspMI	CTAG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	479
TaiI	ACGT	2 cut(s)	823, 931
TaqI	TCGA	2 cut(s)	268, 627
TfiI	GAWTC	6 cut(s)	382, 422, 516, 653, 754, 807
Tru1I	TTAA	4 cut(s)	225, 510, 792, 897
Tru9I	TTAA	4 cut(s)	225, 510, 792, 897
TscAI	CASTG	3 cut(s)	150, 253, 1025
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	5 cut(s)	130, 202, 253, 857, 860
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	123, 731
TspRI	CASTG	3 cut(s)	150, 253, 1025
VpaK11BI	GGWCC	1 cut(s)	523
XapI	RAATTY	2 cut(s)	196, 1024
XceI	RCATGY	2 cut(s)	297, 704
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.