Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010760

Physical Location & Seq

Genomic Coordinates Forward (+)

5845405 .. 5846421

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00222800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCTTGTAGACTTCGATCAATTCAAGTACGAAATTAAATCACTACCTCGAGCCCTTGAGGCTTCTTCAACATTGCCATGCTCGTTCAAATCCTTCAGGCGGCATTGCAATCGGACTCGAGTCAGGAGGTACGAACTGGGTCAGACACTACGACAGGGCAATTTCGCCAAGGTCAAGTTTGTTGGAAATGTTAAGACTGGTGAGAATTTTGATGTTAACATTCTGGAGAAAGAAAAGGTCCTCTCTAATCCTACCTCCCCTGTTCTGCTCTCCCCCGCTAACGACCCCTGTTCTCCTCTCTGGGCATTTTCTGACGTTAATCATGACAAGCTCGCCGGAGGAGGAGGAGGAGGAGGCCGGCAAGCTCTTCTCGACCAGGCCCAGTATGTTTCCAGTGAGTTTTGGTTTCAAGTTGGGCCTGATGGGTTTGGAATCGTTCTTATTGGTTTTGGTTTACTGAATCAGAAGTCTATCCATTTTCTATTTAAACTTCATAATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0007154 GO:0007165 GO:0007584 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009536 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0010107 GO:0010118 GO:0015672 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0030001 GO:0031667 GO:0034220 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0071704 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

167

Amino Acids

18.65

Weight (kDa)

9.24

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30270 AT1G30270 AT1G30270
fragaria_vesca	FvH4_3g05110 FvH4_3g05110 FvH4_3g05110
malus_domestica	MD05G1280400.v1.1 MD10G1258700.v1.1
prunus_persica	Prupe.4G085000_v2.0.a1 Prupe.4G085000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014761
rosa_laevigata	RLG00000032138
rosa_multiflora	Rmu_co8519507.1_g000001 Rmu_sc0017371.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061780 Rroxscaffold_3G00222800
rosa_rugosa	Rorug05G0020500
rosa_samantha	Rh5AG116100 Rh5BG112900
rosa_wichuraiana	Rw5G010020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	9
AciI	CCGC	2 cut(s)	100, 276
AcsI	RAATTY	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	79
AfaI	GTAC	2 cut(s)	29, 131
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	4 cut(s)	25, 69, 88, 410
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	2 cut(s)	331, 365
AluI	AGCT	2 cut(s)	331, 365
Ama87I	CYCGRG	2 cut(s)	48, 117
AoxI	GGCC	3 cut(s)	355, 378, 416
ApoI	RAATTY	1 cut(s)	205
AspS9I	GGNCC	3 cut(s)	238, 379, 416
AsuHPI	GGTGA	1 cut(s)	212
AvaI	CYCGRG	2 cut(s)	48, 117
AvaII	GGWCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	55
BccI	CCATC	1 cut(s)	416
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	1 cut(s)	377
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	377
Bme18I	GGWCC	1 cut(s)	238
BmeT110I	CYCGRG	2 cut(s)	48, 117
BmgT120I	GGNCC	3 cut(s)	238, 379, 416
BmrFI	CCNGG	1 cut(s)	377
BmrI	ACTGGG	2 cut(s)	146, 376
BmuI	ACTGGG	2 cut(s)	146, 376
BoxI	GACNNNNGTC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	4 cut(s)	141, 202, 382, 393
Bse3DI	GCAATG	2 cut(s)	71, 103
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMI	GCAATG	2 cut(s)	71, 103
BseNI	ACTGG	4 cut(s)	141, 202, 382, 393
BseRI	GAGGAG	6 cut(s)	285, 354, 357, 360, 363, 366
BshFI	GGCC	3 cut(s)	357, 380, 418
BsiHKCI	CYCGRG	2 cut(s)	48, 117
BsiSI	CCGG	2 cut(s)	336, 358
BslI	CCNNNNNNNGG	1 cut(s)	99
BsnI	GGCC	3 cut(s)	357, 380, 418
BsoBI	CYCGRG	2 cut(s)	48, 117
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	16
BspACI	CCGC	2 cut(s)	100, 276
BspANI	GGCC	3 cut(s)	357, 380, 418
BspHI	TCATGA	1 cut(s)	322
BspQI	GCTCTTC	1 cut(s)	372
BsrDI	GCAATG	2 cut(s)	71, 103
BsrFI	RCCGGY	1 cut(s)	357
BsrI	ACTGG	4 cut(s)	141, 202, 382, 393
BssAI	RCCGGY	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	372
BstC8I	GCNNGC	3 cut(s)	333, 359, 363
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	1 cut(s)	377
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	375
BsuRI	GGCC	3 cut(s)	357, 380, 418
BtsIMutI	CAGTG	1 cut(s)	400
Cac8I	GCNNGC	3 cut(s)	333, 359, 363
CciI	TCATGA	1 cut(s)	322
Cfr10I	RCCGGY	1 cut(s)	357
Cfr13I	GGNCC	3 cut(s)	238, 379, 416
Csp6I	GTAC	2 cut(s)	28, 130
CviAII	CATG	2 cut(s)	78, 323
CviJI	RGCY	7 cut(s)	53, 62, 331, 357, 365, 380, 418
CviKI_1	RGCY	7 cut(s)	53, 62, 331, 357, 365, 380, 418
CviQI	GTAC	2 cut(s)	28, 130
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
DraI	TTTAAA	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	79
Eco88I	CYCGRG	2 cut(s)	48, 117
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	2 cut(s)	81, 326
FaiI	YATR	4 cut(s)	79, 324, 387, 495
FatI	CATG	2 cut(s)	77, 322
FauI	CCCGC	1 cut(s)	283
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	101
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	3 cut(s)	357, 380, 418
HapII	CCGG	2 cut(s)	336, 358
Hin1II	CATG	2 cut(s)	81, 326
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	4 cut(s)	115, 120, 432, 460
HpaI	GTTAAC	1 cut(s)	217
HpaII	CCGG	2 cut(s)	336, 358
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	3 cut(s)	10, 217, 455
Hpy188I	TCNGA	4 cut(s)	114, 144, 313, 465
Hpy188III	TCNNGA	4 cut(s)	124, 224, 323, 371
Hpy8I	GTNNAC	3 cut(s)	10, 217, 455
HpyAV	CCTTC	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	1 cut(s)	108
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	81, 326
KroI	GCCGGC	1 cut(s)	357
KroNI	GCCGGC	1 cut(s)	359
KspAI	GTTAAC	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	16
LguI	GCTCTTC	1 cut(s)	372
MaeII	ACGT	1 cut(s)	315
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	2 cut(s)	57, 359
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	5 cut(s)	20, 33, 160, 205, 496
MlyI	GAGTC	2 cut(s)	109, 129
MmeI	TCCRAC	1 cut(s)	163
MroNI	GCCGGC	1 cut(s)	357
MseI	TTAA	5 cut(s)	36, 192, 216, 318, 486
MslI	CAYNNNNRTG	1 cut(s)	76
MspI	CCGG	2 cut(s)	336, 358
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	59
NaeI	GCCGGC	1 cut(s)	359
NdeII	GATC	1 cut(s)	16
NgoMIV	GCCGGC	1 cut(s)	357
NlaIII	CATG	2 cut(s)	81, 326
PaeR7I	CTCGAG	2 cut(s)	48, 117
PagI	TCATGA	1 cut(s)	322
PciSI	GCTCTTC	1 cut(s)	372
PdiI	GCCGGC	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	432, 460
PkrI	GCNGC	1 cut(s)	102
PleI	GAGTC	2 cut(s)	109, 128
PpsI	GAGTC	2 cut(s)	109, 128
PpuMI	RGGWCCY	1 cut(s)	238
PshAI	GACNNNNGTC	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspPI	GGNCC	3 cut(s)	238, 379, 416
PspPPI	RGGWCCY	1 cut(s)	238
PspXI	VCTCGAGB	2 cut(s)	48, 117
RsaI	GTAC	2 cut(s)	29, 131
RsaNI	GTAC	2 cut(s)	28, 130
RseI	CAYNNNNRTG	1 cut(s)	76
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	5 cut(s)	36, 192, 216, 318, 486
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	3 cut(s)	238, 379, 416
SchI	GAGTC	2 cut(s)	109, 129
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	8 cut(s)	49, 131, 174, 240, 257, 318, 333, 367
Sfr274I	CTCGAG	2 cut(s)	48, 117
SinI	GGWCC	1 cut(s)	238
SlaI	CTCGAG	2 cut(s)	48, 117
SmiMI	CAYNNNNRTG	1 cut(s)	76
SmlI	CTYRAG	3 cut(s)	48, 56, 117
SmoI	CTYRAG	3 cut(s)	48, 56, 117
Sse9I	AATT	5 cut(s)	20, 33, 160, 205, 496
SsiI	CCGC	2 cut(s)	100, 276
StyD4I	CCNGG	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	168
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	4 cut(s)	15, 49, 118, 372
TasI	AATT	5 cut(s)	20, 33, 160, 205, 496
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	2 cut(s)	432, 460
Tru1I	TTAA	5 cut(s)	36, 192, 216, 318, 486
Tru9I	TTAA	5 cut(s)	36, 192, 216, 318, 486
TscAI	CASTG	1 cut(s)	400
TspDTI	ATGAA	1 cut(s)	482
TspRI	CASTG	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	205
XhoI	CTCGAG	2 cut(s)	48, 117
XmiI	GTMKAC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.