Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010760

Physical Location & Seq

Genomic Coordinates Forward (+)

10591223 .. 10597200

Gene Structure 5978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG112900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCGACGAGGGCGGGCAGTACTTCGAGTCGGACTCGGGTCGGGAGGTACGATCTGGGTCGGACCCTAGGGGAGGGCAATTTCGCCAAGGTCAAGTTTGCGAGGAACATCGAGACTGGTGAGAATTTCGCTATTAAGATTCTGGACAAAGAGAAGGTCCTCAAGCACAAGATGATCGGCCAGATCAAACGAGAAATATCAACGATGAAGTTAATTAGACATCCCAATGTAATCCGTATGTATGAGGTGATGGCTAGCAAGACAAAAATATACATCGTTTTGGAGTTTGTGACTGGTGGAGAACTATTTGACAAAATTGCAAGTAAAGGAAGATTGAAAGAAGATGAAGCAAGGAAGTATTTTCAGCAGCTTATAAATGCAGTGGATTACTGCCATAGCAGAGGTGTTTTCCATAGAGACCTGAAGCCTGAGAATTTGCTGCTGGATGCTAATGGAGTGCTTAAAGTTTCAGATTTTGGGCTCAGTGCGCTGCCTCAGCAAGTTCGAGAAGATGGATTACTTCACACAACATGTGGGACACCAAATTATGTTGCCCCTGAGGTCATCAACAACAAAGGGTATGATGGAGCAAAGGCTGATCTATGGTCTTGTGGTGTGATTCTTTTTGTCTTGATGGCTGGCTATCTGCCTTTTGAAGATTCCAATCTCATGTCATTATATAAAAAGATATTCAAGGCTGAGTTCTCATGTCCTCCATGGTTCTCCTCAAGTGCAAAGAAGCTAATTAAGAGAATCTTGGACCCTAACCCCTTGACACGAATTACAATTGCTGAGGTCATTGAGAATGAGTGGTTCAAGAAAGGGTATAAAGCACCTAATTTTGAACAAGTTGATGTTAGTCTCGATGATGTGGATGCGATATTCAATGATTCAGGGGATACTCAGAACCTTGTAGTTGAGAGGCGAGAGGAACGACATGTGCCTGTTACCATGAATGCCTTTGAGCTTATCTCTACATCTCAGGGCCTGAATCTCAATAGTCTTTTTGAGAAACAGATGGTAGGATTAATTTTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0007154 GO:0007165 GO:0007584 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009536 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0010107 GO:0010118 GO:0015672 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0030001 GO:0031667 GO:0034220 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0071704 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

346

Amino Acids

39.15

Weight (kDa)

8.93

Isoelectric Point (pI)

31.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	17 - 272	5.1e-77	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	19 - 268	3.7e-39	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	107 - 222	2.7e-06	Kinase-like
NAF	PF03822	315 - 339	1.8e-08	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30270 AT1G30270 AT1G30270
fragaria_vesca	FvH4_3g05110 FvH4_3g05110 FvH4_3g05110
malus_domestica	MD05G1280400.v1.1 MD10G1258700.v1.1
prunus_persica	Prupe.4G085000_v2.0.a1 Prupe.4G085000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014761
rosa_laevigata	RLG00000032138
rosa_multiflora	Rmu_co8519507.1_g000001 Rmu_sc0017371.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061780 Rroxscaffold_3G00222800
rosa_rugosa	Rorug05G0020500
rosa_samantha	Rh5AG116100 Rh5BG112900
rosa_wichuraiana	Rw5G010020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
AciI	CCGC	1 cut(s)	14
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	2 cut(s)	124, 433
AcuI	CTGAAG	1 cut(s)	443
AfaI	GTAC	2 cut(s)	22, 50
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflIII	ACRYGT	2 cut(s)	530, 937
AgsI	TTSAA	7 cut(s)	337, 656, 694, 817, 845, 886, 1036
AluBI	AGCT	3 cut(s)	370, 742, 967
AluI	AGCT	3 cut(s)	370, 742, 967
Alw26I	GTCTC	3 cut(s)	107, 411, 866
AlwNI	CAGNNNCTG	1 cut(s)	988
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	2 cut(s)	178, 985
ApeKI	GCWGC	3 cut(s)	367, 439, 490
ApoI	RAATTY	2 cut(s)	124, 433
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AseI	ATTAAT	1 cut(s)	1028
AspA2I	CCTAGG	1 cut(s)	67
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	4 cut(s)	63, 157, 760, 985
AsuHPI	GGTGA	2 cut(s)	131, 259
AsuNHI	GCTAGC	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	3 cut(s)	63, 157, 760
AvrII	CCTAGG	1 cut(s)	67
AxyI	CCTNAGG	1 cut(s)	558
BanII	GRGCYC	1 cut(s)	483
BarI	GAAGNNNNNNTAC	2 cut(s)	501, 533
BbvCI	CCTCAGC	2 cut(s)	495, 792
BbvI	GCAGC	3 cut(s)	379, 426, 477
BccI	CCATC	5 cut(s)	244, 506, 578, 628, 1012
BciVI	GTATCC	1 cut(s)	892
BcoDI	GTCTC	3 cut(s)	107, 411, 866
BfaI	CTAG	2 cut(s)	68, 255
BfuI	GTATCC	1 cut(s)	892
BisI	GCNGC	3 cut(s)	368, 440, 491
BlnI	CCTAGG	1 cut(s)	67
BlsI	GCNGC	3 cut(s)	369, 441, 492
BmcAI	AGTACT	1 cut(s)	22
Bme18I	GGWCC	3 cut(s)	63, 157, 760
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	4 cut(s)	63, 157, 760, 985
BmiI	GGNNCC	2 cut(s)	65, 762
BmsI	GCATC	2 cut(s)	436, 865
BmtI	GCTAGC	1 cut(s)	258
BoxI	GACNNNNGTC	1 cut(s)	38
BplI	GAGNNNNNCTC	4 cut(s)	19, 51, 956, 988
Bpu10I	CCTNAGC	2 cut(s)	495, 792
BpuEI	CTTGAG	2 cut(s)	146, 712
BsaBI	GATNNNNATC	1 cut(s)	663
BsaI	GGTCTC	1 cut(s)	411
BsaJI	CCNNGG	3 cut(s)	67, 87, 716
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	2 cut(s)	121, 298
Bse21I	CCTNAGG	1 cut(s)	558
Bse8I	GATNNNNATC	1 cut(s)	663
BseDI	CCNNGG	3 cut(s)	67, 87, 716
BseGI	GGATG	3 cut(s)	220, 451, 880
BseJI	GATNNNNATC	1 cut(s)	663
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	8 cut(s)	420, 496, 509, 549, 690, 783, 917, 995
BseNI	ACTGG	2 cut(s)	121, 298
BseRI	GAGGAG	1 cut(s)	715
BseXI	GCAGC	3 cut(s)	379, 426, 477
BshFI	GGCC	2 cut(s)	180, 987
BsiHKCI	CYCGRG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	3 cut(s)	107, 411, 866
BsmFI	GGGAC	1 cut(s)	550
BsmI	GAATGC	1 cut(s)	961
BsnI	GGCC	2 cut(s)	180, 987
Bso31I	GGTCTC	1 cut(s)	411
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp143I	GATC	4 cut(s)	52, 174, 183, 598
Bsp19I	CCATGG	1 cut(s)	716
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	2 cut(s)	180, 987
BspCNI	CTCAG	8 cut(s)	421, 495, 508, 550, 691, 784, 916, 994
BspLI	GGNNCC	2 cut(s)	65, 762
BspOI	GCTAGC	1 cut(s)	258
BspTNI	GGTCTC	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	121, 298
BssECI	CCNNGG	3 cut(s)	67, 87, 716
BssMI	GATC	4 cut(s)	52, 174, 183, 598
BssT1I	CCWWGG	3 cut(s)	67, 87, 716
BstC8I	GCNNGC	3 cut(s)	16, 256, 640
BstDEI	CTNAG	8 cut(s)	429, 482, 495, 558, 699, 792, 903, 981
BstDSI	CCRYGG	1 cut(s)	716
BstENI	CCTNNNNNAGG	1 cut(s)	71
BstF5I	GGATG	3 cut(s)	220, 451, 880
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	4 cut(s)	55, 177, 186, 601
BstMAI	GTCTC	3 cut(s)	107, 411, 866
BstMBI	GATC	4 cut(s)	52, 174, 183, 598
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 487, 496
BstNSI	RCATGY	2 cut(s)	534, 941
BstPAI	GACNNNNGTC	1 cut(s)	38
BstV1I	GCAGC	3 cut(s)	379, 426, 477
Bsu36I	CCTNAGG	1 cut(s)	558
BsuI	GTATCC	1 cut(s)	892
BsuRI	GGCC	2 cut(s)	180, 987
BtgI	CCRYGG	1 cut(s)	716
BtsCI	GGATG	3 cut(s)	220, 451, 880
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	2 cut(s)	387, 490
Cac8I	GCNNGC	3 cut(s)	16, 256, 640
CaiI	CAGNNNCTG	1 cut(s)	988
CfoI	GCGC	1 cut(s)	490
Cfr13I	GGNCC	4 cut(s)	63, 157, 760, 985
Csp6I	GTAC	2 cut(s)	21, 49
CviAII	CATG	6 cut(s)	531, 670, 708, 717, 938, 952
CviQI	GTAC	2 cut(s)	21, 49
DdeI	CTNAG	8 cut(s)	429, 482, 495, 558, 699, 792, 903, 981
DpnI	GATC	4 cut(s)	54, 176, 185, 600
DpnII	GATC	4 cut(s)	52, 174, 183, 598
EaeI	YGGCCR	1 cut(s)	178
Eco130I	CCWWGG	3 cut(s)	67, 87, 716
Eco24I	GRGCYC	1 cut(s)	483
Eco31I	GGTCTC	1 cut(s)	411
Eco47I	GGWCC	3 cut(s)	63, 157, 760
Eco57I	CTGAAG	1 cut(s)	443
Eco81I	CCTNAGG	1 cut(s)	558
Eco88I	CYCGRG	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	71
EcoO109I	RGGNCCY	2 cut(s)	157, 985
EcoT14I	CCWWGG	3 cut(s)	67, 87, 716
EcoT38I	GRGCYC	1 cut(s)	483
ErhI	CCWWGG	3 cut(s)	67, 87, 716
FaeI	CATG	6 cut(s)	534, 673, 711, 720, 941, 955
FalI	AAGNNNNNCTT	2 cut(s)	740, 772
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	6 cut(s)	530, 669, 707, 716, 937, 951
FauI	CCCGC	1 cut(s)	7
Fnu4HI	GCNGC	3 cut(s)	368, 440, 491
FokI	GGATG	3 cut(s)	207, 458, 887
FriOI	GRGCYC	1 cut(s)	483
Fsp4HI	GCNGC	3 cut(s)	368, 440, 491
FspBI	CTAG	2 cut(s)	68, 255
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	3 cut(s)	368, 440, 491
HaeIII	GGCC	2 cut(s)	180, 987
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	6 cut(s)	534, 673, 711, 720, 941, 955
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HinfI	GANTC	8 cut(s)	28, 34, 139, 619, 659, 753, 890, 991
HphI	GGTGA	2 cut(s)	131, 259
Hpy188I	TCNGA	4 cut(s)	33, 63, 472, 906
Hpy188III	TCNNGA	7 cut(s)	43, 112, 143, 506, 631, 817, 863
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	148
HpyCH4V	TGCA	3 cut(s)	320, 380, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 487, 496
HpyF3I	CTNAG	8 cut(s)	429, 482, 495, 558, 699, 792, 903, 981
Hsp92II	CATG	6 cut(s)	534, 673, 711, 720, 941, 955
HspAI	GCGC	1 cut(s)	488
Kzo9I	GATC	4 cut(s)	52, 174, 183, 598
LmnI	GCTCC	1 cut(s)	587
Lsp1109I	GCAGC	3 cut(s)	379, 426, 477
LweI	GCATC	2 cut(s)	436, 865
MaeI	CTAG	2 cut(s)	68, 255
MaeIII	GTNAC	2 cut(s)	289, 946
MalI	GATC	4 cut(s)	54, 176, 185, 600
MboI	GATC	4 cut(s)	52, 174, 183, 598
MboII	GAAGA	4 cut(s)	342, 353, 521, 668
MfeI	CAATTG	1 cut(s)	786
MhlI	GDGCHC	1 cut(s)	483
MlyI	GAGTC	2 cut(s)	28, 37
MmeI	TCCRAC	2 cut(s)	11, 41
MseI	TTAA	5 cut(s)	135, 212, 462, 747, 1028
MslI	CAYNNNNRTG	1 cut(s)	225
MunI	CAATTG	1 cut(s)	786
Mva1269I	GAATGC	1 cut(s)	961
MwoI	GCNNNNNNNGC	3 cut(s)	11, 487, 496
NcoI	CCATGG	1 cut(s)	716
NdeII	GATC	4 cut(s)	52, 174, 183, 598
NheI	GCTAGC	1 cut(s)	254
NlaIII	CATG	6 cut(s)	534, 673, 711, 720, 941, 955
NlaIV	GGNNCC	2 cut(s)	65, 762
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	2 cut(s)	534, 941
PciI	ACATGT	2 cut(s)	530, 937
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	1 cut(s)	961
PfeI	GAWTC	6 cut(s)	139, 619, 659, 753, 890, 991
PkrI	GCNGC	3 cut(s)	369, 441, 492
PleI	GAGTC	2 cut(s)	28, 36
PpsI	GAGTC	2 cut(s)	28, 36
PpuMI	RGGWCCY	1 cut(s)	157
PscI	ACATGT	2 cut(s)	530, 937
PshAI	GACNNNNGTC	1 cut(s)	38
PshBI	ATTAAT	1 cut(s)	1028
PsiI	TTATAA	1 cut(s)	374
Psp5II	RGGWCCY	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	65, 762
PspPI	GGNCC	4 cut(s)	63, 157, 760, 985
PspPPI	RGGWCCY	1 cut(s)	157
PstNI	CAGNNNCTG	1 cut(s)	988
RsaI	GTAC	2 cut(s)	22, 50
RsaNI	GTAC	2 cut(s)	21, 49
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	5 cut(s)	135, 212, 462, 747, 1028
SatI	GCNGC	3 cut(s)	368, 440, 491
Sau3AI	GATC	4 cut(s)	52, 174, 183, 598
Sau96I	GGNCC	4 cut(s)	63, 157, 760, 985
ScaI	AGTACT	1 cut(s)	22
SchI	GAGTC	2 cut(s)	28, 37
SduI	GDGCHC	1 cut(s)	483
SfaNI	GCATC	2 cut(s)	436, 865
SinI	GGWCC	3 cut(s)	63, 157, 760
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	161, 727
SmoI	CTYRAG	2 cut(s)	161, 727
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	2 cut(s)	68, 255
StyI	CCWWGG	3 cut(s)	67, 87, 716
TaqI	TCGA	4 cut(s)	26, 111, 505, 864
TatI	WGTACW	1 cut(s)	20
TfiI	GAWTC	6 cut(s)	139, 619, 659, 753, 890, 991
Tru1I	TTAA	5 cut(s)	135, 212, 462, 747, 1028
Tru9I	TTAA	5 cut(s)	135, 212, 462, 747, 1028
TscAI	CASTG	2 cut(s)	387, 490
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	3 cut(s)	367, 439, 490
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	221, 360, 968
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	2 cut(s)	387, 490
VpaK11BI	GGWCC	3 cut(s)	63, 157, 760
VspI	ATTAAT	1 cut(s)	1028
XagI	CCTNNNNNAGG	1 cut(s)	71
XapI	RAATTY	2 cut(s)	124, 433
XceI	RCATGY	2 cut(s)	534, 941
XmaJI	CCTAGG	1 cut(s)	67
XspI	CTAG	2 cut(s)	68, 255
ZrmI	AGTACT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.