Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010177

Physical Location & Seq

Genomic Coordinates Forward (+)

3482766 .. 3486193

Gene Structure 3428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2406 bp

ATGGCTAACGTTGTCACTTTGCTCATTTGTTTTTCCATTGCCTCTTTCTTCATTTCTTCCAATGCCGGAAGAAGACTTCTCGACTCCGAAAGCGTCTCCACCAATGGAGCCAGCAACTTCACCATTGTCTGTGATCCTTCGAGGTACGCCAAACTCGGCATGAAGATGTCGGCCTTTGGCTTCTGTGACTCAAACTTGACATACGACGGAAGGGCCAAAGACTTGGTGGATAGGATGACACTGGCAGAGAAAGTGCAGCAGCTCGGAAACAAAGCACTTGGGGTGCCTCGGCTAGGTTTGCCCAAGTACGAGTGGTGGTCTGAGGCACTCCACGGTGTTTCCAACGTCGGTCCGGGAACTTACTTTGACGAGCTCATTCCCGGTGCAACAAGCTTCCCTCCTGTCATTCTCACCGCTGCGGCATTCAACGAATCCTTGTGGAAGGAGATTGGTCAGGTTGTTTCAACAGAAGCAAGAGCTATGTACAACTTAGGAAGGGCTGGATTGACATACTGGAGTCCCAATATCAATGTAGTGAGAGATCCAAGATGGGGTAGAGCCACCGAGACGCCCGGCGAAGACCCTTATGTTGTTGGAGTTTATGCTACAAACTATGTCAGGGGCTTGCAGGATGTTGAGGGTACAGAAAATTTTGCAGACTTGAACTCTAGGCCTCTCAAGGTCTCGTCTTGTTGCAAGCACTATGCTGCCTATGATGTTGATAACTGGCTTGGTGTGGATCGTTACCATTTTGATGCCCAAGTGACGGAGCAAGATATGTCGGAGACTTTCCTTAAACCATTTGAGATGTGTGTTAAAGATGGTGATGTTAGTAGTGTTATGTGCTCTTACAACAAGATTAATGGTATACCAGCTTGTGCTGATCCAAAGCTCTTGAAAGATACCATTAGAGGAGAATGGGACCTTCATGGATATATCGTCTCAGATTGTGATTCTCTAGAAGTGATGGTAAATGGCCACAAATGGCTTGGTGACACTGGAGTGGAAGCTTCTGCACAAGCACTAAAAGCAGGGTTGGATTTGGATTGTGGAGTCTACTACTCTAATTTCACCGAAACTGCTGTAAAACAAGGAAAGGTAAAGATCCAAGAAATAGACAGGTCTTTGAAGCAGCTTTATGCGGTACTTATGAGGCTAGGATTCTTTGATGGAAACCCTATTTACAACTCACTTGGTAAGAAGGATGTGTGCTCCCACGAACACATTGAATTGGCAAGAGAAGCAGCCAAAGAAGGGATTGTCTTACTAAAGAATGCCAATGAAACTTTGCCTTTCAACTCTAACAAGATTAAGAAATTAGCTGTTGTTGGGCCTCATGCCAATGCTACTACTGCTATGATTGGAAACTATGCAGGTATTCCTTGCAAGTTTGTCTCACCTCTTGATGCATTTTCAAACTATGGAGAAGTGAGGTATGAAATGGGATGTGATGGTGTTAAATGTGTAAATGAGAGCTTGATATTTCCAGCCATGCAAGCTGCAAAAGAAGCAGATGTGACCATAATTTTTGCCGGACTAGACTTATCAGTTGAGGCAGAGAGCTTGGACAGGACGGATCTTCTTCTTCCAGGGTACCAAACCCAATTCATCAACCAAGTCGCTCAAGTCTCCAAAGGTCCAGCGATTCTTGTACTCATGTCTGCAGGGGGTGTTGATATTAGCTTTGCCAAGAAAAATGATAACATCAAAGCCATTTTGTGGGCGGGGTACCCTGGTGAGCAAGGTGGTCGTGCTATTGCAGATGTTGTTTTTGGAAATTACAATCCCGGTGGAAGATTACCTCTTACATGGTACCCAGCTGATTATGTGGATATGTTACCGTTGACCTCCATGCCTTTGAGGCCAGTTGATAGCCTAGGATATCCTGGTCGTACATACAAGTTCTATAATGGCTCCACAGTGTACCCATTTGGATATGGTCTTAGCTACACTCAATTCAACTACACTATACTATCTGCGACAAGGTCTCTTGATATAAAGTTAGACAAGTCCCAACACTGCCGTGACTTGGATTACAAGGAAGGGGAATACAAGCCGCCTTGCTCTTCAGTCCTTATTGATGACTTGGATTGCCAATATGATTTTGAGTTTGAGGTTGAAGTACAAAATGTGGGCAAAAGGGATGGAAGTGAGGTCATTATGGTTTACTCAAAACCCCCAAGTGGTATTGCTTCTACACATGCCAAGCAGGTTATTGGGTTTCAGAGGGTGTTTGTGAAAGCTGGAATGACTGAGAAGGTCAAGTTTGTGTTCAATGTTTACAAGAGCTTGGGAATTGTTGATTATACTGCTTATAATCTTCTACCATCAGGCGGACACACCATTTCGCTTGGAGATGATGTGGTTACATTCCCTCTCCATGTCAATCTTCTCGGAAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

802

Amino Acids

88.04

Weight (kDa)

5.28

Isoelectric Point (pI)

29.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	128 - 379	1.2e-35	Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3_C	PF01915	420 - 650	8.7e-51	Glycosyl hydrolase family 3 C-terminal domain
Fn3-like	PF14310	718 - 787	5.9e-09	Fibronectin type III-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09700
fragaria_vesca	FvH4_3g05990
malus_domestica	MD05G1287500.v1.1 MD05G1287700.v1.1 MD05G1288600.v1.1 MD10G1264800.v1.1 MD17G1089800.v1.1
prunus_persica	Prupe.4G077200_v2.0.a1
pyrus_communis	pycom05g26600
rosa_chinensis	RchiOBHm_Chr5g0013421
rosa_laevigata	RLG00000032018
rosa_multiflora	Rmu_sc0003458.1_g000016 Rmu_sc0003458.1_g000017
rosa_roxburghii	Rroxscaffold_1G00063140
rosa_rugosa	Rorug05G0009200 Rorug05G0009300
rosa_samantha	Rh5AG104600 Rh5BG100900 Rh5CG112800 Rh5DG099500
rosa_wichuraiana	Rw5G009120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2316
Acc36I	ACCTGC	2 cut(s)	1364, 2200
Acc65I	GGTACC	3 cut(s)	1593, 1728, 1812
AccB1I	GGYRCC	4 cut(s)	283, 1593, 1728, 1812
AccB7I	CCANNNNNTGG	1 cut(s)	1719
AccI	GTMKAC	2 cut(s)	868, 1056
AciI	CCGC	6 cut(s)	414, 419, 1142, 1724, 2057, 2334
AclI	AACGTT	1 cut(s)	9
AclWI	GGATC	6 cut(s)	128, 536, 747, 878, 1099, 1584
AcoI	YGGCCR	1 cut(s)	976
AcsI	RAATTY	1 cut(s)	649
AcuI	CTGAAG	1 cut(s)	2052
AcyI	GRCGYC	1 cut(s)	569
AfiI	CCNNNNNNNGG	8 cut(s)	293, 551, 766, 1254, 1719, 2029, 2183, 2333
AjnI	CCWGG	3 cut(s)	1588, 1732, 1885
AleI	CACNNNNGTG	2 cut(s)	1001, 2022
Alw21I	GWGCWC	3 cut(s)	375, 848, 1214
Alw26I	GTCTC	8 cut(s)	100, 560, 688, 779, 946, 1399, 1633, 1992
AlwI	GGATC	6 cut(s)	128, 536, 747, 878, 1099, 1584
AoxI	GGCC	6 cut(s)	171, 213, 671, 976, 1331, 1862
ApeKI	GCWGC	7 cut(s)	256, 259, 416, 707, 1132, 1244, 1499
ApoI	RAATTY	1 cut(s)	649
AseI	ATTAAT	1 cut(s)	861
Asp718I	GGTACC	3 cut(s)	1593, 1728, 1812
AspA2I	CCTAGG	1 cut(s)	1876
AspS9I	GGNCC	5 cut(s)	213, 350, 922, 1331, 1637
AsuC2I	CCSGG	4 cut(s)	354, 381, 573, 1788
AsuHPI	GGTGA	7 cut(s)	112, 403, 836, 1004, 1063, 1389, 1748
AvaII	GGWCC	3 cut(s)	350, 922, 1637
AvrII	CCTAGG	1 cut(s)	1876
BaeI	ACNNNNGTAYC	2 cut(s)	1720, 1753
BalI	TGGCCA	1 cut(s)	978
BanI	GGYRCC	4 cut(s)	283, 1593, 1728, 1812
BanII	GRGCYC	1 cut(s)	375
BbsI	GAAGAC	2 cut(s)	79, 585
Bbv12I	GWGCWC	3 cut(s)	375, 848, 1214
BbvI	GCAGC	7 cut(s)	268, 271, 403, 694, 1144, 1256, 1486
BccI	CCATC	7 cut(s)	543, 815, 961, 1163, 1445, 2138, 2335
BceAI	ACGGC	1 cut(s)	2007
BcgI	CGANNNNNNTGC	2 cut(s)	1730, 1764
BciT130I	CCWGG	3 cut(s)	1590, 1734, 1887
BcnI	CCSGG	4 cut(s)	354, 381, 573, 1788
BcoDI	GTCTC	8 cut(s)	100, 560, 688, 779, 946, 1399, 1633, 1992
BfaI	CTAG	6 cut(s)	293, 669, 959, 1157, 1538, 1877
BfmI	CTRYAG	1 cut(s)	1662
BfuAI	ACCTGC	2 cut(s)	1364, 2200
BglI	GCCNNNNNGGC	1 cut(s)	1861
BisI	GCNGC	9 cut(s)	257, 260, 417, 420, 708, 1133, 1245, 1500, 2057
BlnI	CCTAGG	1 cut(s)	1876
BlsI	GCNGC	9 cut(s)	258, 261, 418, 421, 709, 1134, 1246, 1501, 2058
Bme1390I	CCNGG	7 cut(s)	354, 381, 573, 1590, 1734, 1788, 1887
Bme18I	GGWCC	3 cut(s)	350, 922, 1637
BmgT120I	GGNCC	5 cut(s)	213, 350, 922, 1331, 1637
BmiI	GGNNCC	7 cut(s)	109, 285, 923, 1595, 1730, 1814, 1915
BmrFI	CCNGG	7 cut(s)	354, 381, 573, 1590, 1734, 1788, 1887
BmsI	GCATC	2 cut(s)	745, 1396
BpiI	GAAGAC	2 cut(s)	79, 585
BpmI	CTGGAG	2 cut(s)	535, 1020
BpuEI	CTTGAG	2 cut(s)	662, 1608
BpuMI	CCSGG	4 cut(s)	354, 381, 573, 1788
BsaHI	GRCGYC	1 cut(s)	569
BsaI	GGTCTC	2 cut(s)	688, 1992
BsaJI	CCNNGG	5 cut(s)	287, 331, 1589, 1732, 1876
BsaXI	ACNNNNNCTCC	2 cut(s)	2346, 2376
Bsc4I	CCNNNNNNNGG	8 cut(s)	293, 551, 766, 1254, 1719, 2029, 2183, 2333
Bse1I	ACTGG	5 cut(s)	246, 518, 731, 1003, 1865
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	3 cut(s)	1590, 1734, 1887
BseDI	CCNNGG	5 cut(s)	287, 331, 1589, 1732, 1876
BseGI	GGATG	5 cut(s)	240, 637, 1210, 1451, 2149
BseLI	CCNNNNNNNGG	8 cut(s)	293, 551, 766, 1254, 1719, 2029, 2183, 2333
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	3 cut(s)	312, 957, 2244
BseNI	ACTGG	5 cut(s)	246, 518, 731, 1003, 1865
BseRI	GAGGAG	1 cut(s)	927
BseXI	GCAGC	7 cut(s)	268, 271, 403, 694, 1144, 1256, 1486
BseYI	CCCAGC	1 cut(s)	1816
BsgI	GTGCAG	2 cut(s)	275, 999
BshFI	GGCC	6 cut(s)	173, 215, 673, 978, 1333, 1864
BshNI	GGYRCC	4 cut(s)	283, 1593, 1728, 1812
BsiHKAI	GWGCWC	3 cut(s)	375, 848, 1214
BsiSI	CCGG	6 cut(s)	66, 353, 381, 573, 1533, 1788
BslFI	GGGAC	3 cut(s)	504, 935, 1996
BslI	CCNNNNNNNGG	8 cut(s)	293, 551, 766, 1254, 1719, 2029, 2183, 2333
BsmAI	GTCTC	8 cut(s)	100, 560, 688, 779, 946, 1399, 1633, 1992
BsmBI	CGTCTC	3 cut(s)	100, 560, 946
BsmFI	GGGAC	3 cut(s)	504, 935, 1996
BsmI	GAATGC	2 cut(s)	422, 1279
BsnI	GGCC	6 cut(s)	173, 215, 673, 978, 1333, 1864
Bso31I	GGTCTC	2 cut(s)	688, 1992
Bsp1286I	GDGCHC	3 cut(s)	375, 848, 1214
Bsp1407I	TGTACA	1 cut(s)	483
Bsp143I	GATC	6 cut(s)	133, 541, 739, 883, 1104, 1576
BspACI	CCGC	6 cut(s)	414, 419, 1142, 1724, 2057, 2334
BspANI	GGCC	6 cut(s)	173, 215, 673, 978, 1333, 1864
BspCNI	CTCAG	3 cut(s)	313, 956, 2245
BspLI	GGNNCC	7 cut(s)	109, 285, 923, 1595, 1730, 1814, 1915
BspMAI	CTGCAG	1 cut(s)	1666
BspMI	ACCTGC	2 cut(s)	1364, 2200
BspPI	GGATC	6 cut(s)	128, 536, 747, 878, 1099, 1584
BspQI	GCTCTTC	1 cut(s)	2071
BspT107I	GGYRCC	4 cut(s)	283, 1593, 1728, 1812
BspTNI	GGTCTC	2 cut(s)	688, 1992
BsrDI	GCAATG	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	483
BsrI	ACTGG	5 cut(s)	246, 518, 731, 1003, 1865
BssECI	CCNNGG	5 cut(s)	287, 331, 1589, 1732, 1876
BssMI	GATC	6 cut(s)	133, 541, 739, 883, 1104, 1576
BssNAI	GTATAC	1 cut(s)	869
BssNI	GRCGYC	1 cut(s)	569
BssT1I	CCWWGG	1 cut(s)	1876
Bst1107I	GTATAC	1 cut(s)	869
Bst2UI	CCWGG	3 cut(s)	1590, 1734, 1887
Bst4CI	ACNGT	3 cut(s)	335, 1842, 1921
Bst6I	CTCTTC	1 cut(s)	2071
BstACI	GRCGYC	1 cut(s)	569
BstAUI	TGTACA	1 cut(s)	483
BstC8I	GCNNGC	4 cut(s)	112, 626, 698, 1497
BstDEI	CTNAG	5 cut(s)	321, 490, 943, 1943, 2253
BstDSI	CCRYGG	1 cut(s)	331
BstENI	CCTNNNNNAGG	1 cut(s)	291
BstF5I	GGATG	5 cut(s)	240, 637, 1210, 1451, 2149
BstKTI	GATC	6 cut(s)	136, 544, 742, 886, 1107, 1579
BstMAI	GTCTC	8 cut(s)	100, 560, 688, 779, 946, 1399, 1633, 1992
BstMBI	GATC	6 cut(s)	133, 541, 739, 883, 1104, 1576
BstMWI	GCNNNNNNNGC	7 cut(s)	298, 1028, 1241, 1352, 1496, 1508, 1861
BstNI	CCWGG	3 cut(s)	1590, 1734, 1887
BstNSI	RCATGY	1 cut(s)	2204
BstSCI	CCNGG	7 cut(s)	352, 379, 571, 1588, 1732, 1786, 1885
BstSFI	CTRYAG	1 cut(s)	1662
BstV1I	GCAGC	7 cut(s)	268, 271, 403, 694, 1144, 1256, 1486
BstV2I	GAAGAC	2 cut(s)	79, 585
BstX2I	RGATCY	3 cut(s)	541, 1104, 1576
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	3 cut(s)	541, 1104, 1576
BstZ17I	GTATAC	1 cut(s)	869
BsuRI	GGCC	6 cut(s)	173, 215, 673, 978, 1333, 1864
BtgI	CCRYGG	1 cut(s)	331
BtsCI	GGATG	5 cut(s)	240, 637, 1210, 1451, 2149
BtsI	GCAGTG	1 cut(s)	2017
BtsIMutI	CAGTG	4 cut(s)	239, 996, 1926, 2017
BveI	ACCTGC	2 cut(s)	1364, 2200
Cac8I	GCNNGC	4 cut(s)	112, 626, 698, 1497
Cfr13I	GGNCC	5 cut(s)	213, 350, 922, 1331, 1637
CpoI	CGGWCCG	1 cut(s)	350
CseI	GACGC	2 cut(s)	82, 577
CspCI	CAANNNNNGTGG	2 cut(s)	1771, 1806
CspI	CGGWCCG	1 cut(s)	350
CviAII	CATG	9 cut(s)	160, 929, 1337, 1492, 1657, 1809, 1852, 2201, 2381
DdeI	CTNAG	5 cut(s)	321, 490, 943, 1943, 2253
DpnI	GATC	6 cut(s)	135, 543, 741, 885, 1106, 1578
DpnII	GATC	6 cut(s)	133, 541, 739, 883, 1104, 1576
EaeI	YGGCCR	1 cut(s)	976
Eam1104I	CTCTTC	1 cut(s)	2071
EarI	CTCTTC	1 cut(s)	2071
EciI	GGCGGA	1 cut(s)	2349
Ecl136II	GAGCTC	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	1876
Eco147I	AGGCCT	1 cut(s)	673
Eco24I	GRGCYC	1 cut(s)	375
Eco31I	GGTCTC	2 cut(s)	688, 1992
Eco32I	GATATC	1 cut(s)	1883
Eco47I	GGWCC	3 cut(s)	350, 922, 1637
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	2052
EcoICRI	GAGCTC	1 cut(s)	373
EcoNI	CCTNNNNNAGG	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	922
EcoRII	CCWGG	3 cut(s)	1588, 1732, 1885
EcoRV	GATATC	1 cut(s)	1883
EcoT14I	CCWWGG	1 cut(s)	1876
EcoT22I	ATGCAT	1 cut(s)	1411
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	1876
Esp3I	CGTCTC	3 cut(s)	100, 560, 946
FaeI	CATG	9 cut(s)	163, 932, 1340, 1495, 1660, 1812, 1855, 2204, 2384
FaqI	GGGAC	3 cut(s)	504, 935, 1996
FatI	CATG	9 cut(s)	159, 928, 1336, 1491, 1656, 1808, 1851, 2200, 2380
FauI	CCCGC	1 cut(s)	1717
FblI	GTMKAC	2 cut(s)	868, 1056
Fnu4HI	GCNGC	9 cut(s)	257, 260, 417, 420, 708, 1133, 1245, 1500, 2057
FokI	GGATG	5 cut(s)	247, 644, 1217, 1458, 2156
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	9 cut(s)	257, 260, 417, 420, 708, 1133, 1245, 1500, 2057
FspBI	CTAG	6 cut(s)	293, 669, 959, 1157, 1538, 1877
GluI	GCNGC	9 cut(s)	257, 260, 417, 420, 708, 1133, 1245, 1500, 2057
GsaI	CCCAGC	1 cut(s)	1820
GsuI	CTGGAG	2 cut(s)	535, 1020
HaeIII	GGCC	6 cut(s)	173, 215, 673, 978, 1333, 1864
HapII	CCGG	6 cut(s)	66, 353, 381, 573, 1533, 1788
HgaI	GACGC	2 cut(s)	82, 577
Hin1I	GRCGYC	1 cut(s)	569
Hin1II	CATG	9 cut(s)	163, 932, 1340, 1495, 1660, 1812, 1855, 2204, 2384
HincII	GTYRAC	1 cut(s)	1845
HindII	GTYRAC	1 cut(s)	1845
HindIII	AAGCTT	2 cut(s)	391, 1008
HinfI	GANTC	8 cut(s)	83, 188, 431, 517, 953, 1053, 1161, 1645
HpaII	CCGG	6 cut(s)	66, 353, 381, 573, 1533, 1788
HphI	GGTGA	7 cut(s)	112, 403, 836, 1004, 1063, 1389, 1748
Hpy166II	GTNNAC	6 cut(s)	869, 1057, 1845, 1924, 2167, 2281
Hpy188I	TCNGA	7 cut(s)	88, 266, 322, 784, 946, 2226, 2396
Hpy188III	TCNNGA	5 cut(s)	80, 895, 959, 1403, 1991
Hpy8I	GTNNAC	6 cut(s)	869, 1057, 1845, 1924, 2167, 2281
Hpy99I	CGWCG	2 cut(s)	209, 350
HpyAV	CCTTC	9 cut(s)	147, 204, 436, 489, 935, 1195, 1247, 2036, 2251
HpyCH4III	ACNGT	3 cut(s)	335, 1842, 1921
HpyCH4IV	ACGT	2 cut(s)	9, 345
HpyF10VI	GCNNNNNNNGC	7 cut(s)	298, 1028, 1241, 1352, 1496, 1508, 1861
HpyF3I	CTNAG	5 cut(s)	321, 490, 943, 1943, 2253
HpySE526I	ACGT	2 cut(s)	9, 345
Hsp92I	GRCGYC	1 cut(s)	569
Hsp92II	CATG	9 cut(s)	163, 932, 1340, 1495, 1660, 1812, 1855, 2204, 2384
KpnI	GGTACC	3 cut(s)	1597, 1732, 1816
Kzo9I	GATC	6 cut(s)	133, 541, 739, 883, 1104, 1576
LguI	GCTCTTC	1 cut(s)	2071
LmnI	GCTCC	4 cut(s)	107, 769, 1217, 1919
Lsp1109I	GCAGC	7 cut(s)	268, 271, 403, 694, 1144, 1256, 1486
LweI	GCATC	2 cut(s)	745, 1396
MaeI	CTAG	6 cut(s)	293, 669, 959, 1157, 1538, 1877
MaeII	ACGT	2 cut(s)	9, 345
MaeIII	GTNAC	9 cut(s)	13, 185, 743, 763, 992, 1516, 1836, 2024, 2365
MalI	GATC	6 cut(s)	135, 543, 741, 885, 1106, 1578
MboI	GATC	6 cut(s)	133, 541, 739, 883, 1104, 1576
MflI	RGATCY	3 cut(s)	541, 1104, 1576
MhlI	GDGCHC	3 cut(s)	375, 848, 1214
MlsI	TGGCCA	1 cut(s)	978
MluCI	AATT	9 cut(s)	649, 1066, 1229, 1316, 1524, 1604, 1777, 1955, 2295
MluNI	TGGCCA	1 cut(s)	978
MlyI	GAGTC	4 cut(s)	77, 182, 526, 1062
MmeI	TCCRAC	4 cut(s)	366, 574, 762, 1017
Mox20I	TGGCCA	1 cut(s)	978
Mph1103I	ATGCAT	1 cut(s)	1411
MscI	TGGCCA	1 cut(s)	978
MseI	TTAA	5 cut(s)	795, 816, 861, 1311, 1458
MslI	CAYNNNNRTG	5 cut(s)	164, 753, 1001, 1341, 2022
Msp20I	TGGCCA	1 cut(s)	978
MspA1I	CMGCKG	2 cut(s)	416, 1820
MspI	CCGG	6 cut(s)	66, 353, 381, 573, 1533, 1788
MspR9I	CCNGG	7 cut(s)	354, 381, 573, 1590, 1734, 1788, 1887
Mva1269I	GAATGC	2 cut(s)	422, 1279
MvaI	CCWGG	3 cut(s)	1590, 1734, 1887
MwoI	GCNNNNNNNGC	7 cut(s)	298, 1028, 1241, 1352, 1496, 1508, 1861
NciI	CCSGG	4 cut(s)	354, 381, 573, 1788
NdeII	GATC	6 cut(s)	133, 541, 739, 883, 1104, 1576
NlaIII	CATG	9 cut(s)	163, 932, 1340, 1495, 1660, 1812, 1855, 2204, 2384
NlaIV	GGNNCC	7 cut(s)	109, 285, 923, 1595, 1730, 1814, 1915
NmeAIII	GCCGAG	2 cut(s)	135, 268
NmuCI	GTSAC	6 cut(s)	13, 185, 763, 992, 1516, 2024
NsiI	ATGCAT	1 cut(s)	1411
NspI	RCATGY	1 cut(s)	2204
OliI	CACNNNNGTG	2 cut(s)	1001, 2022
PceI	AGGCCT	1 cut(s)	673
PciSI	GCTCTTC	1 cut(s)	2071
PctI	GAATGC	2 cut(s)	422, 1279
PfeI	GAWTC	4 cut(s)	431, 953, 1161, 1645
PflFI	GACNNNGTC	1 cut(s)	1984
PflMI	CCANNNNNTGG	1 cut(s)	1719
PfoI	TCCNGGA	1 cut(s)	352
PkrI	GCNGC	9 cut(s)	258, 261, 418, 421, 709, 1134, 1246, 1501, 2058
PleI	GAGTC	4 cut(s)	77, 182, 525, 1061
PpsI	GAGTC	4 cut(s)	77, 182, 525, 1061
PpuMI	RGGWCCY	1 cut(s)	922
PshBI	ATTAAT	1 cut(s)	861
PsiI	TTATAA	1 cut(s)	2316
Psp124BI	GAGCTC	1 cut(s)	375
Psp1406I	AACGTT	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	922
Psp6I	CCWGG	3 cut(s)	1588, 1732, 1885
PspFI	CCCAGC	1 cut(s)	1816
PspGI	CCWGG	3 cut(s)	1588, 1732, 1885
PspN4I	GGNNCC	7 cut(s)	109, 285, 923, 1595, 1730, 1814, 1915
PspPI	GGNCC	5 cut(s)	213, 350, 922, 1331, 1637
PspPPI	RGGWCCY	1 cut(s)	922
PstI	CTGCAG	1 cut(s)	1666
PsuI	RGATCY	3 cut(s)	541, 1104, 1576
PsyI	GACNNNGTC	1 cut(s)	1984
PvuII	CAGCTG	1 cut(s)	1820
RseI	CAYNNNNRTG	5 cut(s)	164, 753, 1001, 1341, 2022
Rsr2I	CGGWCCG	1 cut(s)	350
RsrII	CGGWCCG	1 cut(s)	350
SacI	GAGCTC	1 cut(s)	375
SapI	GCTCTTC	1 cut(s)	2071
SaqAI	TTAA	5 cut(s)	795, 816, 861, 1311, 1458
SatI	GCNGC	9 cut(s)	257, 260, 417, 420, 708, 1133, 1245, 1500, 2057
Sau3AI	GATC	6 cut(s)	133, 541, 739, 883, 1104, 1576
Sau96I	GGNCC	5 cut(s)	213, 350, 922, 1331, 1637
SchI	GAGTC	4 cut(s)	77, 182, 526, 1062
ScrFI	CCNGG	7 cut(s)	354, 381, 573, 1590, 1734, 1788, 1887
SduI	GDGCHC	3 cut(s)	375, 848, 1214
SfaNI	GCATC	2 cut(s)	745, 1396
SfcI	CTRYAG	1 cut(s)	1662
SinI	GGWCC	3 cut(s)	350, 922, 1637
SmiMI	CAYNNNNRTG	5 cut(s)	164, 753, 1001, 1341, 2022
SmlI	CTYRAG	2 cut(s)	677, 1623
SmoI	CTYRAG	2 cut(s)	677, 1623
Sse9I	AATT	9 cut(s)	649, 1066, 1229, 1316, 1524, 1604, 1777, 1955, 2295
SseBI	AGGCCT	1 cut(s)	673
SsiI	CCGC	6 cut(s)	414, 419, 1142, 1724, 2057, 2334
SspMI	CTAG	6 cut(s)	293, 669, 959, 1157, 1538, 1877
SstI	GAGCTC	1 cut(s)	375
StuI	AGGCCT	1 cut(s)	673
StyD4I	CCNGG	7 cut(s)	352, 379, 571, 1588, 1732, 1786, 1885
StyI	CCWWGG	1 cut(s)	1876
TaaI	ACNGT	3 cut(s)	335, 1842, 1921
TaiI	ACGT	2 cut(s)	12, 348
TaqI	TCGA	2 cut(s)	81, 140
TaqII	GACCGA	1 cut(s)	338
TasI	AATT	9 cut(s)	649, 1066, 1229, 1316, 1524, 1604, 1777, 1955, 2295
TatI	WGTACW	3 cut(s)	483, 1651, 2122
TauI	GCSGC	2 cut(s)	422, 2059
TfiI	GAWTC	4 cut(s)	431, 953, 1161, 1645
Tru1I	TTAA	5 cut(s)	795, 816, 861, 1311, 1458
Tru9I	TTAA	5 cut(s)	795, 816, 861, 1311, 1458
TscAI	CASTG	4 cut(s)	246, 1003, 1926, 2024
TseFI	GTSAC	6 cut(s)	13, 185, 763, 992, 1516, 2024
TseI	GCWGC	7 cut(s)	256, 259, 416, 707, 1132, 1244, 1499
Tsp45I	GTSAC	6 cut(s)	13, 185, 763, 992, 1516, 2024
TspDTI	ATGAA	6 cut(s)	40, 176, 917, 1296, 1452, 1597
TspGWI	ACGGA	3 cut(s)	222, 782, 1589
TspRI	CASTG	4 cut(s)	246, 1003, 1926, 2024
Tth111I	GACNNNGTC	1 cut(s)	1984
Van91I	CCANNNNNTGG	1 cut(s)	1719
VpaK11BI	GGWCC	3 cut(s)	350, 922, 1637
VspI	ATTAAT	1 cut(s)	861
XagI	CCTNNNNNAGG	1 cut(s)	291
XapI	RAATTY	1 cut(s)	649
XbaI	TCTAGA	1 cut(s)	958
XceI	RCATGY	1 cut(s)	2204
XcmI	CCANNNNNNNNNTGG	2 cut(s)	223, 986
XmaJI	CCTAGG	1 cut(s)	1876
XmiI	GTMKAC	2 cut(s)	868, 1056
XspI	CTAG	6 cut(s)	293, 669, 959, 1157, 1538, 1877
Zsp2I	ATGCAT	1 cut(s)	1411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.