Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003458.1

Orthogroup ID

OG0010177

Physical Location & Seq

Genomic Coordinates Reverse (-)

78251 .. 79820

Gene Structure 1570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003458.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

atggatttggactgtggaatctactaccctaatttcactgagtctgctgtgaagcaagggaaggtgaaggtcaaagaaatagacaattctttgaagcagctttatgtggtacttatgaggctaggcttttttgatggaaaccctatttacaactcacttggcaagaaagatgtgtgctcccaagaacacattgaattggcaagagaagcagccaaagaaggaattgttttactaaaaaatgccaatgaaactttgcctgtcaactcttacaagatcaagaaattggccgtggtcgggcctcatgccaatgctactacagctatgattggaaattatgcaggtattccttgcaagttcatctcacctcttgatgctttttcgaaatatggagaagtgaagtatgaagtgggatgtgatgttaagtgtccaaatgagagcctgatattcccagccatgcaagctgcaaaggaagctgatgtgacaataatttttgctggattagacttatcagttgaggctgagagcttggacaggactgatcttcttctccctgggtatcaaacccaattcatcaaccaagttgctcaagtgtcaaaaggtccggtaattcttgtgatcttgtctgcagggggtgttgatatcacctttgccaagaacaatgataacatcaaagccattttgtgggctggataccctggtgagcaaggtggccgtgccattgcagatgttgtttttggacattacaatcctggtggaagattacctcttacatggtacccagctgattatgtggatatgctacccttaacctccatgccattgaggccaattgatagcttaggatatcctggtcgtacatacaagttctacaatggatccacagtttacccatttggatatggtcttagctacaccaaattcaactacactatactatctgcaaagagatctgtagacataaagttggagaagacccaacactgccgtgacttggagtacaaacaaggggaaaagaaaccagcttgcccttcagtccttattgatgacttggactgccaatatgatttcgagtttgaggttgaagtccgaaatgtgggcggaagggatggaagtgaagtcattttagtttactctaaacccccaagtggcattgcctctacacatgctaagcaggttattgggtttcagagggtgtttgttgaagctggcaagactgagaaagtcaaatttgtcttcaatgtttacaagagcttgggaattattgattatacagcttataatcttttaccatcaggcagccacaccatttcgctcggagacgatctggttacattccctctccaagttaaccttgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

452

Amino Acids

49.81

Weight (kDa)

5.96

Isoelectric Point (pI)

28.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09700
fragaria_vesca	FvH4_3g05990
malus_domestica	MD05G1287500.v1.1 MD05G1287700.v1.1 MD05G1288600.v1.1 MD10G1264800.v1.1 MD17G1089800.v1.1
prunus_persica	Prupe.4G077200_v2.0.a1
pyrus_communis	pycom05g26600
rosa_chinensis	RchiOBHm_Chr5g0013421
rosa_laevigata	RLG00000032018
rosa_multiflora	Rmu_sc0003458.1_g000016 Rmu_sc0003458.1_g000017
rosa_roxburghii	Rroxscaffold_1G00063140
rosa_rugosa	Rorug05G0009200 Rorug05G0009300
rosa_samantha	Rh5AG104600 Rh5BG100900 Rh5CG112800 Rh5DG099500
rosa_wichuraiana	Rw5G009120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1278
Acc36I	ACCTGC	2 cut(s)	329, 1162
Acc65I	GGTACC	1 cut(s)	774
AccB1I	GGYRCC	1 cut(s)	774
AccB7I	CCANNNNNTGG	1 cut(s)	681
AccI	GTMKAC	1 cut(s)	954
AciI	CCGC	1 cut(s)	1098
AclWI	GGATC	2 cut(s)	870, 883
AcoI	YGGCCR	2 cut(s)	285, 709
AcsI	RAATTY	2 cut(s)	917, 1226
AcuI	CTGAAG	1 cut(s)	1014
AfaI	GTAC	4 cut(s)	111, 776, 856, 998
AfiI	CCNNNNNNNGG	5 cut(s)	294, 681, 991, 1093, 1145
AgsI	TTSAA	6 cut(s)	94, 194, 922, 1082, 1202, 1237
AjnI	CCWGG	4 cut(s)	550, 694, 748, 847
AleI	CACNNNNGTG	1 cut(s)	984
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	1 cut(s)	1311
AlwI	GGATC	2 cut(s)	870, 883
AoxI	GGCC	4 cut(s)	285, 296, 709, 824
ApeKI	GCWGC	4 cut(s)	97, 209, 461, 1296
ApoI	RAATTY	2 cut(s)	917, 1226
Asp718I	GGTACC	1 cut(s)	774
AspS9I	GGNCC	2 cut(s)	296, 599
AsuHPI	GGTGA	4 cut(s)	76, 354, 634, 710
AsuII	TTCGAA	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	599
BaeI	ACNNNNGTAYC	2 cut(s)	682, 715
BamHI	GGATCC	1 cut(s)	875
BanI	GGYRCC	1 cut(s)	774
BbsI	GAAGAC	2 cut(s)	977, 1225
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	4 cut(s)	109, 221, 448, 1308
BccI	CCATC	3 cut(s)	128, 1100, 1297
BceAI	ACGGC	3 cut(s)	272, 696, 969
BciT130I	CCWGG	4 cut(s)	552, 696, 750, 849
BciVI	GTATCC	1 cut(s)	683
BcoDI	GTCTC	1 cut(s)	1311
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	3 cut(s)	315, 624, 951
BfuAI	ACCTGC	2 cut(s)	329, 1162
BfuI	GTATCC	1 cut(s)	683
BglI	GCCNNNNNGGC	1 cut(s)	823
BglII	AGATCT	1 cut(s)	947
BisI	GCNGC	4 cut(s)	98, 210, 462, 1297
BlpI	GCTNAGC	1 cut(s)	1167
BlsI	GCNGC	4 cut(s)	99, 211, 463, 1298
Bme1390I	CCNGG	4 cut(s)	552, 696, 750, 849
Bme18I	GGWCC	1 cut(s)	599
BmgT120I	GGNCC	2 cut(s)	296, 599
BmiI	GGNNCC	2 cut(s)	776, 877
BmrFI	CCNGG	4 cut(s)	552, 696, 750, 849
BmsI	GCATC	1 cut(s)	361
BpiI	GAAGAC	2 cut(s)	977, 1225
Bpu10I	CCTNAGC	1 cut(s)	838
Bpu1102I	GCTNAGC	1 cut(s)	1167
Bpu14I	TTCGAA	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	570
BsaJI	CCNNGG	4 cut(s)	288, 550, 551, 694
BsaWI	WCCGGW	1 cut(s)	601
Bsc4I	CCNNNNNNNGG	5 cut(s)	294, 681, 991, 1093, 1145
Bse3DI	GCAATG	2 cut(s)	717, 1149
BseBI	CCWGG	4 cut(s)	552, 696, 750, 849
BseDI	CCNNGG	4 cut(s)	288, 550, 551, 694
BseGI	GGATG	2 cut(s)	416, 1111
BseLI	CCNNNNNNNGG	5 cut(s)	294, 681, 991, 1093, 1145
BseMI	GCAATG	2 cut(s)	717, 1149
BseMII	CTCAG	3 cut(s)	30, 510, 1206
BseXI	GCAGC	4 cut(s)	109, 221, 448, 1308
BseYI	CCCAGC	2 cut(s)	448, 778
BshFI	GGCC	4 cut(s)	287, 298, 711, 826
BshNI	GGYRCC	1 cut(s)	774
BsiHKAI	GWGCWC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	602
BslI	CCNNNNNNNGG	5 cut(s)	294, 681, 991, 1093, 1145
BsmAI	GTCTC	1 cut(s)	1311
BsmBI	CGTCTC	1 cut(s)	1311
BsnI	GGCC	4 cut(s)	287, 298, 711, 826
Bsp119I	TTCGAA	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	6 cut(s)	273, 538, 615, 875, 947, 1321
Bsp1720I	GCTNAGC	1 cut(s)	1167
BspACI	CCGC	1 cut(s)	1098
BspANI	GGCC	4 cut(s)	287, 298, 711, 826
BspCNI	CTCAG	3 cut(s)	31, 511, 1207
BspLI	GGNNCC	2 cut(s)	776, 877
BspMAI	CTGCAG	1 cut(s)	628
BspMI	ACCTGC	2 cut(s)	329, 1162
BspPI	GGATC	2 cut(s)	870, 883
BspT104I	TTCGAA	1 cut(s)	380
BspT107I	GGYRCC	1 cut(s)	774
BsrDI	GCAATG	2 cut(s)	717, 1149
BssECI	CCNNGG	4 cut(s)	288, 550, 551, 694
BssMI	GATC	6 cut(s)	273, 538, 615, 875, 947, 1321
Bst2UI	CCWGG	4 cut(s)	552, 696, 750, 849
Bst4CI	ACNGT	2 cut(s)	14, 883
BstBI	TTCGAA	1 cut(s)	380
BstC8I	GCNNGC	3 cut(s)	459, 1024, 1207
BstDEI	CTNAG	6 cut(s)	39, 519, 838, 905, 1167, 1215
BstDSI	CCRYGG	1 cut(s)	288
BstF5I	GGATG	2 cut(s)	416, 1111
BstKTI	GATC	6 cut(s)	276, 541, 618, 878, 950, 1324
BstMAI	GTCTC	1 cut(s)	1311
BstMBI	GATC	6 cut(s)	273, 538, 615, 875, 947, 1321
BstMWI	GCNNNNNNNGC	5 cut(s)	206, 317, 458, 470, 823
BstNI	CCWGG	4 cut(s)	552, 696, 750, 849
BstNSI	RCATGY	1 cut(s)	1166
BstSCI	CCNGG	4 cut(s)	550, 694, 748, 847
BstSFI	CTRYAG	3 cut(s)	315, 624, 951
BstV1I	GCAGC	4 cut(s)	109, 221, 448, 1308
BstV2I	GAAGAC	2 cut(s)	977, 1225
BstX2I	RGATCY	2 cut(s)	875, 947
BstYI	RGATCY	2 cut(s)	875, 947
BsuI	GTATCC	1 cut(s)	683
BsuRI	GGCC	4 cut(s)	287, 298, 711, 826
BtgI	CCRYGG	1 cut(s)	288
BtsCI	GGATG	2 cut(s)	416, 1111
BtsI	GCAGTG	1 cut(s)	979
BtsIMutI	CAGTG	2 cut(s)	36, 979
BveI	ACCTGC	2 cut(s)	329, 1162
Cac8I	GCNNGC	3 cut(s)	459, 1024, 1207
Cfr13I	GGNCC	2 cut(s)	296, 599
Csp6I	GTAC	4 cut(s)	110, 775, 855, 997
CspCI	CAANNNNNGTGG	2 cut(s)	733, 768
CviAII	CATG	5 cut(s)	302, 454, 771, 814, 1163
CviQI	GTAC	4 cut(s)	110, 775, 855, 997
DdeI	CTNAG	6 cut(s)	39, 519, 838, 905, 1167, 1215
DpnI	GATC	6 cut(s)	275, 540, 617, 877, 949, 1323
DpnII	GATC	6 cut(s)	273, 538, 615, 875, 947, 1321
EaeI	YGGCCR	2 cut(s)	285, 709
EciI	GGCGGA	1 cut(s)	1113
Eco32I	GATATC	2 cut(s)	640, 845
Eco47I	GGWCC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	1014
EcoRII	CCWGG	4 cut(s)	550, 694, 748, 847
EcoRV	GATATC	2 cut(s)	640, 845
Esp3I	CGTCTC	1 cut(s)	1311
FaeI	CATG	5 cut(s)	305, 457, 774, 817, 1166
FalI	AAGNNNNNCTT	1 cut(s)	1335
FatI	CATG	5 cut(s)	301, 453, 770, 813, 1162
FblI	GTMKAC	1 cut(s)	954
Fnu4HI	GCNGC	4 cut(s)	98, 210, 462, 1297
FokI	GGATG	2 cut(s)	423, 1118
Fsp4HI	GCNGC	4 cut(s)	98, 210, 462, 1297
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	4 cut(s)	98, 210, 462, 1297
GsaI	CCCAGC	2 cut(s)	452, 782
HaeIII	GGCC	4 cut(s)	287, 298, 711, 826
HapII	CCGG	1 cut(s)	602
Hin1II	CATG	5 cut(s)	305, 457, 774, 817, 1166
HincII	GTYRAC	2 cut(s)	262, 1348
HindII	GTYRAC	2 cut(s)	262, 1348
HinfI	GANTC	2 cut(s)	18, 41
HpaI	GTTAAC	1 cut(s)	1348
HpaII	CCGG	1 cut(s)	602
HphI	GGTGA	4 cut(s)	76, 354, 634, 710
Hpy166II	GTNNAC	6 cut(s)	262, 886, 955, 1129, 1243, 1348
Hpy188I	TCNGA	3 cut(s)	1088, 1188, 1316
Hpy188III	TCNNGA	2 cut(s)	277, 368
Hpy8I	GTNNAC	6 cut(s)	262, 886, 955, 1129, 1243, 1348
HpyAV	CCTTC	5 cut(s)	55, 61, 212, 1038, 1095
HpyCH4III	ACNGT	2 cut(s)	14, 883
HpyCH4V	TGCA	7 cut(s)	338, 351, 457, 464, 626, 722, 941
HpyF10VI	GCNNNNNNNGC	5 cut(s)	206, 317, 458, 470, 823
HpyF3I	CTNAG	6 cut(s)	39, 519, 838, 905, 1167, 1215
Hsp92II	CATG	5 cut(s)	305, 457, 774, 817, 1166
KpnI	GGTACC	1 cut(s)	778
KspAI	GTTAAC	1 cut(s)	1348
Kzo9I	GATC	6 cut(s)	273, 538, 615, 875, 947, 1321
LmnI	GCTCC	1 cut(s)	182
Lsp1109I	GCAGC	4 cut(s)	109, 221, 448, 1308
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	122
MaeIII	GTNAC	3 cut(s)	478, 986, 1327
MalI	GATC	6 cut(s)	275, 540, 617, 877, 949, 1323
MboI	GATC	6 cut(s)	273, 538, 615, 875, 947, 1321
MboII	GAAGA	5 cut(s)	533, 536, 768, 982, 1225
MfeI	CAATTG	1 cut(s)	828
MflI	RGATCY	2 cut(s)	875, 947
MhlI	GDGCHC	1 cut(s)	179
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	945
MseI	TTAA	3 cut(s)	420, 806, 1347
MslI	CAYNNNNRTG	2 cut(s)	306, 984
MspA1I	CMGCKG	1 cut(s)	782
MspI	CCGG	1 cut(s)	602
MspR9I	CCNGG	4 cut(s)	552, 696, 750, 849
MunI	CAATTG	1 cut(s)	828
MvaI	CCWGG	4 cut(s)	552, 696, 750, 849
MwoI	GCNNNNNNNGC	5 cut(s)	206, 317, 458, 470, 823
NdeII	GATC	6 cut(s)	273, 538, 615, 875, 947, 1321
NlaIII	CATG	5 cut(s)	305, 457, 774, 817, 1166
NlaIV	GGNNCC	2 cut(s)	776, 877
NmuCI	GTSAC	2 cut(s)	478, 986
NspI	RCATGY	1 cut(s)	1166
NspV	TTCGAA	1 cut(s)	380
OliI	CACNNNNGTG	1 cut(s)	984
PasI	CCCWGGG	1 cut(s)	551
PfeI	GAWTC	1 cut(s)	18
PflMI	CCANNNNNTGG	1 cut(s)	681
PkrI	GCNGC	4 cut(s)	99, 211, 463, 1298
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PsiI	TTATAA	1 cut(s)	1278
Psp6I	CCWGG	4 cut(s)	550, 694, 748, 847
PspFI	CCCAGC	2 cut(s)	448, 778
PspGI	CCWGG	4 cut(s)	550, 694, 748, 847
PspN4I	GGNNCC	2 cut(s)	776, 877
PspPI	GGNCC	2 cut(s)	296, 599
PstI	CTGCAG	1 cut(s)	628
PsuI	RGATCY	2 cut(s)	875, 947
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	4 cut(s)	111, 776, 856, 998
RsaNI	GTAC	4 cut(s)	110, 775, 855, 997
RseI	CAYNNNNRTG	2 cut(s)	306, 984
SaqAI	TTAA	3 cut(s)	420, 806, 1347
SatI	GCNGC	4 cut(s)	98, 210, 462, 1297
Sau3AI	GATC	6 cut(s)	273, 538, 615, 875, 947, 1321
Sau96I	GGNCC	2 cut(s)	296, 599
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	4 cut(s)	552, 696, 750, 849
SduI	GDGCHC	1 cut(s)	179
SfaNI	GCATC	1 cut(s)	361
SfcI	CTRYAG	3 cut(s)	315, 624, 951
SfuI	TTCGAA	1 cut(s)	380
SinI	GGWCC	1 cut(s)	599
SmiMI	CAYNNNNRTG	2 cut(s)	306, 984
SmlI	CTYRAG	1 cut(s)	585
SmoI	CTYRAG	1 cut(s)	585
SsiI	CCGC	1 cut(s)	1098
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	4 cut(s)	550, 694, 748, 847
TaaI	ACNGT	2 cut(s)	14, 883
TaqI	TCGA	2 cut(s)	380, 1068
TatI	WGTACW	1 cut(s)	996
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	3 cut(s)	420, 806, 1347
Tru9I	TTAA	3 cut(s)	420, 806, 1347
TscAI	CASTG	2 cut(s)	43, 986
TseFI	GTSAC	2 cut(s)	478, 986
TseI	GCWGC	4 cut(s)	97, 209, 461, 1296
Tsp45I	GTSAC	2 cut(s)	478, 986
TspDTI	ATGAA	4 cut(s)	261, 346, 417, 559
TspRI	CASTG	2 cut(s)	43, 986
Van91I	CCANNNNNTGG	1 cut(s)	681
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	2 cut(s)	917, 1226
XceI	RCATGY	1 cut(s)	1166
XmiI	GTMKAC	1 cut(s)	954
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.