Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003458.1

Orthogroup ID

OG0010177

Physical Location & Seq

Genomic Coordinates Reverse (-)

80098 .. 81683

Gene Structure 1586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003458.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atggctaccattgtcagtttgctcgtttattttgccattgcctcttctttcttcgtttcttctaatgctggaagaaaacttctcgactctacaagtgtttccaccaatggagccactaactttaccattgtgtgtgatccgtcaaggtactccaacctcggcctgaacatatctgactttgccttctgcgactcagccttgccgtacgatgctagggtcaaagacttggtggataggatgaccttggcagagaaagtgcagcagctaggaaacaaagcagctggggtgcctagactaggcttgcccaagtacgagtggtggtctgaggcactccacggtgtatccaacgtcggtccgggtacgtactttgatgatgttgttcccggtgcaacaagcttcccccctgtcattctcaccgccgcgtcattcaacgagtccttgtggaaggagattggtcaggttgtttcaacagaagcaagagccatgtacaacctaggaagggctggattgacatattggagtcccaatataaatgtagtgagggatccaaggtggggaagagccacagagacgcccggtgaagacccttatgttgttggagcttatgctataaactatgtccgaggcttgcaagatgttaagggtacagagaattttgcagacttgaactctaggcctcttaaggtctcctcttgctgcaagcactatgctgcctatgatgttgataactggcttggtgtggatcgttaccattttgatgcccaggttacggagcaagatatgtcagagactttccttaaaccatttgagatgtgtgttaaagatggtgatgttagtagtgtaatgtgctcctacaacaggattaatggaataccagcttgtgctgatacaaagctcttgaaagataccattagaggagaatgggaccttcatggatacattgtctcagattgtgactctctagaagtaatggtgaatggccataaatggcttggggacactggagtggaagcttctgcacaagcattaaaagcaggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

346

Amino Acids

37.89

Weight (kDa)

4.96

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09700
fragaria_vesca	FvH4_3g05990
malus_domestica	MD05G1287500.v1.1 MD05G1287700.v1.1 MD05G1288600.v1.1 MD10G1264800.v1.1 MD17G1089800.v1.1
prunus_persica	Prupe.4G077200_v2.0.a1
pyrus_communis	pycom05g26600
rosa_chinensis	RchiOBHm_Chr5g0013421
rosa_laevigata	RLG00000032018
rosa_multiflora	Rmu_sc0003458.1_g000016 Rmu_sc0003458.1_g000017
rosa_roxburghii	Rroxscaffold_1G00063140
rosa_rugosa	Rorug05G0009200 Rorug05G0009300
rosa_samantha	Rh5AG104600 Rh5BG100900 Rh5CG112800 Rh5DG099500
rosa_wichuraiana	Rw5G009120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1025
AccB1I	GGYRCC	1 cut(s)	286
AccII	CGCG	1 cut(s)	422
AciI	CCGC	2 cut(s)	417, 420
AclWI	GGATC	4 cut(s)	131, 539, 552, 750
AcoI	YGGCCR	1 cut(s)	979
AcsI	RAATTY	1 cut(s)	652
AcyI	GRCGYC	1 cut(s)	572
AfaI	GTAC	7 cut(s)	149, 206, 311, 361, 365, 488, 646
AfiI	CCNNNNNNNGG	5 cut(s)	296, 499, 554, 769, 858
AflII	CTTAAG	1 cut(s)	680
AgsI	TTSAA	4 cut(s)	430, 468, 667, 901
AjnI	CCWGG	1 cut(s)	762
AleI	CACNNNNGTG	1 cut(s)	1004
AluBI	AGCT	7 cut(s)	265, 281, 396, 602, 878, 895, 1013
AluI	AGCT	7 cut(s)	265, 281, 396, 602, 878, 895, 1013
Alw21I	GWGCWC	1 cut(s)	851
Alw26I	GTCTC	4 cut(s)	563, 691, 782, 949
AlwI	GGATC	4 cut(s)	131, 539, 552, 750
AoxI	GGCC	3 cut(s)	160, 674, 979
ApeKI	GCWGC	5 cut(s)	259, 262, 278, 696, 710
ApoI	RAATTY	1 cut(s)	652
AseI	ATTAAT	1 cut(s)	864
AspA2I	CCTAGG	1 cut(s)	493
AspS9I	GGNCC	2 cut(s)	353, 925
AsuC2I	CCSGG	3 cut(s)	357, 384, 576
AsuHPI	GGTGA	4 cut(s)	406, 590, 839, 985
AvaII	GGWCC	2 cut(s)	353, 925
AvrII	CCTAGG	1 cut(s)	493
BalI	TGGCCA	1 cut(s)	981
BamHI	GGATCC	1 cut(s)	544
BanI	GGYRCC	1 cut(s)	286
BbsI	GAAGAC	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	851
BbvI	GCAGC	5 cut(s)	271, 274, 290, 683, 697
BccI	CCATC	1 cut(s)	818
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	764
BciVI	GTATCC	2 cut(s)	352, 929
BcnI	CCSGG	3 cut(s)	357, 384, 576
BcoDI	GTCTC	4 cut(s)	563, 691, 782, 949
BfaI	CTAG	7 cut(s)	213, 266, 291, 296, 494, 672, 962
BfrI	CTTAAG	1 cut(s)	680
BfuAI	ACCTGC	1 cut(s)	1025
BfuI	GTATCC	2 cut(s)	352, 929
BisI	GCNGC	6 cut(s)	260, 263, 279, 420, 697, 711
BlnI	CCTAGG	1 cut(s)	493
BlsI	GCNGC	6 cut(s)	261, 264, 280, 421, 698, 712
Bme1390I	CCNGG	4 cut(s)	357, 384, 576, 764
Bme18I	GGWCC	2 cut(s)	353, 925
BmgT120I	GGNCC	2 cut(s)	353, 925
BmiI	GGNNCC	4 cut(s)	112, 288, 546, 926
BmrFI	CCNGG	4 cut(s)	357, 384, 576, 764
BmsI	GCATC	2 cut(s)	199, 748
BpiI	GAAGAC	1 cut(s)	588
BpmI	CTGGAG	1 cut(s)	1023
BpuMI	CCSGG	3 cut(s)	357, 384, 576
BsaAI	YACGTR	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	572
BsaI	GGTCTC	1 cut(s)	691
BsaJI	CCNNGG	7 cut(s)	157, 243, 334, 493, 548, 622, 762
Bsc4I	CCNNNNNNNGG	5 cut(s)	296, 499, 554, 769, 858
Bse1I	ACTGG	2 cut(s)	734, 1006
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	764
BseDI	CCNNGG	7 cut(s)	157, 243, 334, 493, 548, 622, 762
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	5 cut(s)	296, 499, 554, 769, 858
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	3 cut(s)	207, 315, 960
BseNI	ACTGG	2 cut(s)	734, 1006
BseRI	GAGGAG	2 cut(s)	679, 930
BseXI	GCAGC	5 cut(s)	271, 274, 290, 683, 697
BseYI	CCCAGC	1 cut(s)	281
BsgI	GTGCAG	2 cut(s)	278, 1002
Bsh1236I	CGCG	1 cut(s)	422
BshFI	GGCC	3 cut(s)	162, 676, 981
BshNI	GGYRCC	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	851
BsiSI	CCGG	3 cut(s)	356, 384, 576
BsiWI	CGTACG	1 cut(s)	204
BslFI	GGGAC	3 cut(s)	507, 938, 1010
BslI	CCNNNNNNNGG	5 cut(s)	296, 499, 554, 769, 858
BsmAI	GTCTC	4 cut(s)	563, 691, 782, 949
BsmBI	CGTCTC	1 cut(s)	563
BsmFI	GGGAC	3 cut(s)	507, 938, 1010
BsnI	GGCC	3 cut(s)	162, 676, 981
Bso31I	GGTCTC	1 cut(s)	691
Bsp1286I	GDGCHC	1 cut(s)	851
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	3 cut(s)	136, 544, 742
BspACI	CCGC	2 cut(s)	417, 420
BspANI	GGCC	3 cut(s)	162, 676, 981
BspCNI	CTCAG	3 cut(s)	206, 316, 959
BspFNI	CGCG	1 cut(s)	422
BspLI	GGNNCC	4 cut(s)	112, 288, 546, 926
BspMI	ACCTGC	1 cut(s)	1025
BspPI	GGATC	4 cut(s)	131, 539, 552, 750
BspQI	GCTCTTC	1 cut(s)	553
BspT107I	GGYRCC	1 cut(s)	286
BspTI	CTTAAG	1 cut(s)	680
BspTNI	GGTCTC	1 cut(s)	691
BsrDI	GCAATG	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	734, 1006
BssECI	CCNNGG	7 cut(s)	157, 243, 334, 493, 548, 622, 762
BssMI	GATC	3 cut(s)	136, 544, 742
BssNI	GRCGYC	1 cut(s)	572
BssT1I	CCWWGG	3 cut(s)	243, 493, 548
Bst2UI	CCWGG	1 cut(s)	764
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	2 cut(s)	49, 553
BstACI	GRCGYC	1 cut(s)	572
BstAFI	CTTAAG	1 cut(s)	680
BstAUI	TGTACA	1 cut(s)	486
BstBAI	YACGTR	1 cut(s)	363
BstC8I	GCNNGC	3 cut(s)	302, 629, 701
BstDEI	CTNAG	3 cut(s)	193, 324, 946
BstDSI	CCRYGG	1 cut(s)	334
BstENI	CCTNNNNNAGG	2 cut(s)	294, 856
BstF5I	GGATG	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	422
BstKTI	GATC	3 cut(s)	139, 547, 745
BstMAI	GTCTC	4 cut(s)	563, 691, 782, 949
BstMBI	GATC	3 cut(s)	136, 544, 742
BstMWI	GCNNNNNNNGC	1 cut(s)	1031
BstNI	CCWGG	1 cut(s)	764
BstSCI	CCNGG	4 cut(s)	355, 382, 574, 762
BstSNI	TACGTA	1 cut(s)	363
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	5 cut(s)	271, 274, 290, 683, 697
BstV2I	GAAGAC	1 cut(s)	588
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BsuI	GTATCC	2 cut(s)	352, 929
BsuRI	GGCC	3 cut(s)	162, 676, 981
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	999
BveI	ACCTGC	1 cut(s)	1025
Cac8I	GCNNGC	3 cut(s)	302, 629, 701
Cfr13I	GGNCC	2 cut(s)	353, 925
CpoI	CGGWCCG	1 cut(s)	353
CseI	GACGC	2 cut(s)	411, 580
Csp6I	GTAC	7 cut(s)	148, 205, 310, 360, 364, 487, 645
CspI	CGGWCCG	1 cut(s)	353
CviAII	CATG	2 cut(s)	484, 932
CviQI	GTAC	7 cut(s)	148, 205, 310, 360, 364, 487, 645
DdeI	CTNAG	3 cut(s)	193, 324, 946
DpnI	GATC	3 cut(s)	138, 546, 744
DpnII	GATC	3 cut(s)	136, 544, 742
EaeI	YGGCCR	1 cut(s)	979
Eam1104I	CTCTTC	2 cut(s)	49, 553
EarI	CTCTTC	2 cut(s)	49, 553
Eco105I	TACGTA	1 cut(s)	363
Eco130I	CCWWGG	3 cut(s)	243, 493, 548
Eco147I	AGGCCT	1 cut(s)	676
Eco31I	GGTCTC	1 cut(s)	691
Eco47I	GGWCC	2 cut(s)	353, 925
EcoNI	CCTNNNNNAGG	2 cut(s)	294, 856
EcoO109I	RGGNCCY	1 cut(s)	925
EcoRII	CCWGG	1 cut(s)	762
EcoT14I	CCWWGG	3 cut(s)	243, 493, 548
ErhI	CCWWGG	3 cut(s)	243, 493, 548
Esp3I	CGTCTC	1 cut(s)	563
FaeI	CATG	2 cut(s)	487, 935
FaqI	GGGAC	3 cut(s)	507, 938, 1010
FatI	CATG	2 cut(s)	483, 931
Fnu4HI	GCNGC	6 cut(s)	260, 263, 279, 420, 697, 711
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	6 cut(s)	260, 263, 279, 420, 697, 711
FspBI	CTAG	7 cut(s)	213, 266, 291, 296, 494, 672, 962
GluI	GCNGC	6 cut(s)	260, 263, 279, 420, 697, 711
GsaI	CCCAGC	1 cut(s)	285
GsuI	CTGGAG	1 cut(s)	1023
HaeIII	GGCC	3 cut(s)	162, 676, 981
HapII	CCGG	3 cut(s)	356, 384, 576
HgaI	GACGC	2 cut(s)	411, 580
Hin1I	GRCGYC	1 cut(s)	572
Hin1II	CATG	2 cut(s)	487, 935
HindIII	AAGCTT	2 cut(s)	394, 1011
HinfI	GANTC	5 cut(s)	86, 191, 434, 520, 956
HpaII	CCGG	3 cut(s)	356, 384, 576
HphI	GGTGA	4 cut(s)	406, 590, 839, 985
Hpy188I	TCNGA	5 cut(s)	175, 325, 623, 787, 949
Hpy188III	TCNNGA	3 cut(s)	83, 898, 962
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	4 cut(s)	193, 439, 492, 938
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	2 cut(s)	348, 362
HpyCH4V	TGCA	6 cut(s)	259, 389, 631, 659, 699, 1019
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1031
HpyF3I	CTNAG	3 cut(s)	193, 324, 946
HpySE526I	ACGT	2 cut(s)	348, 362
Hsp92I	GRCGYC	1 cut(s)	572
Hsp92II	CATG	2 cut(s)	487, 935
Kzo9I	GATC	3 cut(s)	136, 544, 742
LguI	GCTCTTC	1 cut(s)	553
LmnI	GCTCC	4 cut(s)	110, 599, 772, 854
Lsp1109I	GCAGC	5 cut(s)	271, 274, 290, 683, 697
LweI	GCATC	2 cut(s)	199, 748
MaeI	CTAG	7 cut(s)	213, 266, 291, 296, 494, 672, 962
MaeII	ACGT	2 cut(s)	348, 362
MaeIII	GTNAC	3 cut(s)	746, 766, 953
MalI	GATC	3 cut(s)	138, 546, 744
MboI	GATC	3 cut(s)	136, 544, 742
MboII	GAAGA	6 cut(s)	36, 43, 51, 84, 570, 593
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	1 cut(s)	851
MlsI	TGGCCA	1 cut(s)	981
MluCI	AATT	1 cut(s)	652
MluNI	TGGCCA	1 cut(s)	981
MlyI	GAGTC	5 cut(s)	80, 185, 443, 529, 950
MmeI	TCCRAC	3 cut(s)	177, 369, 577
MnlI	CCTC	8 cut(s)	52, 167, 319, 534, 617, 687, 700, 908
Mox20I	TGGCCA	1 cut(s)	981
MscI	TGGCCA	1 cut(s)	981
MseI	TTAA	7 cut(s)	639, 681, 798, 819, 864, 1028, 1039
MslI	CAYNNNNRTG	2 cut(s)	756, 1004
Msp20I	TGGCCA	1 cut(s)	981
MspA1I	CMGCKG	1 cut(s)	281
MspCI	CTTAAG	1 cut(s)	680
MspI	CCGG	3 cut(s)	356, 384, 576
MspR9I	CCNGG	4 cut(s)	357, 384, 576, 764
MvaI	CCWGG	1 cut(s)	764
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	1 cut(s)	1031
NciI	CCSGG	3 cut(s)	357, 384, 576
NdeII	GATC	3 cut(s)	136, 544, 742
NlaIII	CATG	2 cut(s)	487, 935
NlaIV	GGNNCC	4 cut(s)	112, 288, 546, 926
NmeAIII	GCCGAG	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	953
OliI	CACNNNNGTG	1 cut(s)	1004
PceI	AGGCCT	1 cut(s)	676
PciSI	GCTCTTC	1 cut(s)	553
Pfl23II	CGTACG	1 cut(s)	204
PkrI	GCNGC	6 cut(s)	261, 264, 280, 421, 698, 712
PleI	GAGTC	5 cut(s)	80, 185, 442, 528, 950
PpsI	GAGTC	5 cut(s)	80, 185, 442, 528, 950
Ppu21I	YACGTR	1 cut(s)	363
PpuMI	RGGWCCY	1 cut(s)	925
PshBI	ATTAAT	1 cut(s)	864
Psp5II	RGGWCCY	1 cut(s)	925
Psp6I	CCWGG	1 cut(s)	762
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	762
PspLI	CGTACG	1 cut(s)	204
PspN4I	GGNNCC	4 cut(s)	112, 288, 546, 926
PspPI	GGNCC	2 cut(s)	353, 925
PspPPI	RGGWCCY	1 cut(s)	925
PsuI	RGATCY	1 cut(s)	544
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	7 cut(s)	149, 206, 311, 361, 365, 488, 646
RsaNI	GTAC	7 cut(s)	148, 205, 310, 360, 364, 487, 645
RseI	CAYNNNNRTG	2 cut(s)	756, 1004
Rsr2I	CGGWCCG	1 cut(s)	353
RsrII	CGGWCCG	1 cut(s)	353
SapI	GCTCTTC	1 cut(s)	553
SaqAI	TTAA	7 cut(s)	639, 681, 798, 819, 864, 1028, 1039
SatI	GCNGC	6 cut(s)	260, 263, 279, 420, 697, 711
Sau3AI	GATC	3 cut(s)	136, 544, 742
Sau96I	GGNCC	2 cut(s)	353, 925
SchI	GAGTC	5 cut(s)	80, 185, 443, 529, 950
ScrFI	CCNGG	4 cut(s)	357, 384, 576, 764
SduI	GDGCHC	1 cut(s)	851
SfaNI	GCATC	2 cut(s)	199, 748
SinI	GGWCC	2 cut(s)	353, 925
SmiMI	CAYNNNNRTG	2 cut(s)	756, 1004
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
SnaBI	TACGTA	1 cut(s)	363
Sse9I	AATT	1 cut(s)	652
SseBI	AGGCCT	1 cut(s)	676
SsiI	CCGC	2 cut(s)	417, 420
SspMI	CTAG	7 cut(s)	213, 266, 291, 296, 494, 672, 962
StuI	AGGCCT	1 cut(s)	676
StyD4I	CCNGG	4 cut(s)	355, 382, 574, 762
StyI	CCWWGG	3 cut(s)	243, 493, 548
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	2 cut(s)	351, 365
TaqI	TCGA	1 cut(s)	84
TaqII	GACCGA	1 cut(s)	341
TasI	AATT	1 cut(s)	652
TatI	WGTACW	1 cut(s)	486
TauI	GCSGC	1 cut(s)	422
Tru1I	TTAA	7 cut(s)	639, 681, 798, 819, 864, 1028, 1039
Tru9I	TTAA	7 cut(s)	639, 681, 798, 819, 864, 1028, 1039
TscAI	CASTG	1 cut(s)	1006
TseFI	GTSAC	1 cut(s)	953
TseI	GCWGC	5 cut(s)	259, 262, 278, 696, 710
Tsp45I	GTSAC	1 cut(s)	953
TspDTI	ATGAA	1 cut(s)	920
TspGWI	ACGGA	2 cut(s)	129, 785
TspRI	CASTG	1 cut(s)	1006
Vha464I	CTTAAG	1 cut(s)	680
VpaK11BI	GGWCC	2 cut(s)	353, 925
VspI	ATTAAT	1 cut(s)	864
XagI	CCTNNNNNAGG	2 cut(s)	294, 856
XapI	RAATTY	1 cut(s)	652
XbaI	TCTAGA	1 cut(s)	961
XcmI	CCANNNNNNNNNTGG	1 cut(s)	989
XmaJI	CCTAGG	1 cut(s)	493
XspI	CTAG	7 cut(s)	213, 266, 291, 296, 494, 672, 962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.