Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010177

Physical Location & Seq

Genomic Coordinates Forward (+)

7364431 .. 7366067

Gene Structure 1637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1089800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTCTATCCCTCTCATCCTCCCGCGAGCCTCACCCATTATCAACCTCGTGCCTGCACCGCCTTCACCATCATTACCCCATCATCTTTCCCTCTCTTTCGTCTCTGCGGGACACAAAGGAACCCAGATAAGCTCTCTGGCGGGATTTTTCCTTTTCCTCCGGTTAGGTTTTGAAGACGGGAACGGCGCGGGGGAAGCACACCCATTTTTCTGGCGAACCCGTGAGCTTCGAGGGAATTTCCAGTCACCTCCGACCGTGTCACGGTTATTTGAGGGACAATATGCTGCCTGGGGCGAGGATCTGGTGTTGGCATTTAGGTCGGGAGAAATAATCTCTAACTACGAGCTTAAGGACATGGAGCAAGCATTAAGCCGGGAGTTGGTAATCTCTGGATACGGGCGCAGAGACCACGGAGCAGGCATTGGGCCGAGAGTTATATTTATTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.37

Weight (kDa)

6.98

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09700
fragaria_vesca	FvH4_3g05990
malus_domestica	MD05G1287500.v1.1 MD05G1287700.v1.1 MD05G1288600.v1.1 MD10G1264800.v1.1 MD17G1089800.v1.1
prunus_persica	Prupe.4G077200_v2.0.a1
pyrus_communis	pycom05g26600
rosa_chinensis	RchiOBHm_Chr5g0013421
rosa_laevigata	RLG00000032018
rosa_multiflora	Rmu_sc0003458.1_g000016 Rmu_sc0003458.1_g000017
rosa_roxburghii	Rroxscaffold_1G00063140
rosa_rugosa	Rorug05G0009200 Rorug05G0009300
rosa_samantha	Rh5AG104600 Rh5BG100900 Rh5CG112800 Rh5DG099500
rosa_wichuraiana	Rw5G009120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	25, 188
AciI	CCGC	5 cut(s)	23, 59, 107, 140, 188
AclWI	GGATC	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	235
AfiI	CCNNNNNNNGG	2 cut(s)	261, 379
AflII	CTTAAG	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	3 cut(s)	132, 226, 346
AluI	AGCT	3 cut(s)	132, 226, 346
Alw26I	GTCTC	2 cut(s)	106, 399
AlwI	GGATC	1 cut(s)	306
AoxI	GGCC	1 cut(s)	425
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	235
AspLEI	GCGC	2 cut(s)	188, 402
AspS9I	GGNCC	1 cut(s)	425
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	3 cut(s)	24, 57, 237
BauI	CACGAG	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	2 cut(s)	76, 87
BceAI	ACGGC	1 cut(s)	199
BcgI	CGANNNNNNTGC	2 cut(s)	300, 334
BciT130I	CCWGG	1 cut(s)	289
BciVI	GTATCC	1 cut(s)	386
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	106, 399
BfrI	CTTAAG	1 cut(s)	347
BfuI	GTATCC	1 cut(s)	386
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	2 cut(s)	289, 374
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	2 cut(s)	289, 374
BpiI	GAAGAC	1 cut(s)	180
BpuMI	CCSGG	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	288, 409
BsaWI	WCCGGW	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 379
Bse1I	ACTGG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	288, 409
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	2 cut(s)	261, 379
BseNI	ACTGG	1 cut(s)	241
BseXI	GCAGC	1 cut(s)	271
BsgI	GTGCAG	1 cut(s)	39
Bsh1236I	CGCG	2 cut(s)	25, 188
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	427
BsiEI	CGRYCG	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	160, 373
BslFI	GGGAC	2 cut(s)	123, 288
BslI	CCNNNNNNNGG	2 cut(s)	261, 379
BsmAI	GTCTC	2 cut(s)	106, 399
BsmBI	CGTCTC	1 cut(s)	106
BsmFI	GGGAC	2 cut(s)	123, 288
BsnI	GGCC	1 cut(s)	427
Bso31I	GGTCTC	1 cut(s)	399
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	5 cut(s)	23, 59, 107, 140, 188
BspANI	GGCC	1 cut(s)	427
BspFNI	CGCG	2 cut(s)	25, 188
BspLI	GGNNCC	1 cut(s)	121
BspPI	GGATC	1 cut(s)	306
BspTI	CTTAAG	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	288, 409
BssMI	GATC	1 cut(s)	298
BssSI	CACGAG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	2 cut(s)	256, 264
BstAFI	CTTAAG	1 cut(s)	347
BstC8I	GCNNGC	4 cut(s)	27, 54, 363, 418
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	1 cut(s)	15
BstFNI	CGCG	2 cut(s)	25, 188
BstHHI	GCGC	2 cut(s)	188, 402
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	2 cut(s)	106, 399
BstMBI	GATC	1 cut(s)	298
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 194
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	2 cut(s)	287, 372
BstUI	CGCG	2 cut(s)	25, 188
BstV1I	GCAGC	1 cut(s)	271
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	298
BstXI	CCANNNNNNTGG	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	298
BsuI	GTATCC	1 cut(s)	386
BsuRI	GGCC	1 cut(s)	427
BtgI	CCRYGG	1 cut(s)	409
BtsCI	GGATG	1 cut(s)	15
Cac8I	GCNNGC	4 cut(s)	27, 54, 363, 418
CfoI	GCGC	2 cut(s)	188, 402
Cfr13I	GGNCC	1 cut(s)	425
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	6 cut(s)	29, 132, 226, 346, 372, 427
CviKI_1	RGCY	6 cut(s)	29, 132, 226, 346, 372, 427
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	399
EcoRII	CCWGG	1 cut(s)	287
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	1 cut(s)	358
FaiI	YATR	3 cut(s)	282, 356, 437
FaqI	GGGAC	2 cut(s)	123, 288
FatI	CATG	1 cut(s)	354
FauI	CCCGC	4 cut(s)	30, 100, 133, 181
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	1 cut(s)	2
Fsp4HI	GCNGC	1 cut(s)	285
GlaI	GCGC	2 cut(s)	187, 401
GluI	GCNGC	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	427
HapII	CCGG	2 cut(s)	160, 373
HhaI	GCGC	2 cut(s)	188, 402
Hin1II	CATG	1 cut(s)	358
Hin6I	GCGC	2 cut(s)	186, 400
HinP1I	GCGC	2 cut(s)	186, 400
HpaII	CCGG	2 cut(s)	160, 373
HphI	GGTGA	3 cut(s)	24, 57, 237
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	2 cut(s)	321, 390
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	2 cut(s)	256, 264
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 194
Hsp92II	CATG	1 cut(s)	358
HspAI	GCGC	2 cut(s)	186, 400
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	2 cut(s)	358, 413
Lsp1109I	GCAGC	1 cut(s)	271
MaeIII	GTNAC	2 cut(s)	243, 258
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	1 cut(s)	185
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	1 cut(s)	235
MmeI	TCCRAC	1 cut(s)	275
MseI	TTAA	2 cut(s)	348, 368
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	2 cut(s)	160, 373
MspR9I	CCNGG	2 cut(s)	289, 374
MvaI	CCWGG	1 cut(s)	289
MvnI	CGCG	2 cut(s)	25, 188
MwoI	GCNNNNNNNGC	2 cut(s)	58, 194
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	2 cut(s)	243, 258
PflFI	GACNNNGTC	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	298
PsyI	GACNNNGTC	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	348, 368
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	425
ScrFI	CCNGG	2 cut(s)	289, 374
SetI	ASST	7 cut(s)	48, 134, 169, 228, 250, 320, 348
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	1 cut(s)	235
SsiI	CCGC	5 cut(s)	23, 59, 107, 140, 188
StyD4I	CCNGG	2 cut(s)	287, 372
TaaI	ACNGT	2 cut(s)	256, 264
TaqI	TCGA	1 cut(s)	229
TasI	AATT	1 cut(s)	235
Tru1I	TTAA	2 cut(s)	348, 368
Tru9I	TTAA	2 cut(s)	348, 368
TseFI	GTSAC	2 cut(s)	243, 258
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	2 cut(s)	243, 258
TspGWI	ACGGA	1 cut(s)	426
Tth111I	GACNNNGTC	1 cut(s)	256
Vha464I	CTTAAG	1 cut(s)	347
XapI	RAATTY	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.