Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010177

Physical Location & Seq

Genomic Coordinates Forward (+)

27799877 .. 27801732

Gene Structure 1856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGCTACCAATATTGTTGTTTTTCTTGTTACTTTCTCCATTGCTTACTTTGCCATTTCTTCCAATGCCGGAAGAGTCCTAGACTCGAACAATGTTGCATGCAACAATTGTGGTAGCAACTTCACTCATGTATGTGATCCTTCAAGGTATTCTGACCTTGATTTGGACATGTCAGCCTTCGCCTTTTGCGACTCTAAACTTTCGTATGGCGATAGGGCCAAGGACTTGGTAGATAGGATGACACTGGCGGAGAAAGAGAAGCAGCTTGGAAATAATGCAAAGGGGGTTCCAAGGTTGGGGTTGTCAAAGTATGAGTGGTGGTCCGAGGCACTCCACGGTGTGTCAAATGTTGGTCCCGGGACTTATTTCGATGATCTTATTCCGGGCGCAACAAGCTTTCCCACTGTTATTCTTACCACCGCAGCATTCAACCAGTCTTTGTGGAAGCAAATTGGTCAGGTTGTTTCAACAGAAACAAGAGCCATGTACAATCTCGGAAGAGCCGGATTGACATATTGGAGTCCCAACGTTAATGTAGTGAGGGATCCGAGAGGCTTGCAGGATGTAGACAACTGGCTCGGTGTTGATCGTTACCATTTTGATGCCAGGGTGACGGAGCAAGATATGGCGAAAACTTTCCTAAAACCATTCGAGATGTGTATTAAGGATGGGGATGTAAGCAGTGTAATGTGCTCTTATAACCGTGTTAATGGCACTTGTGCTGATCCGAAACTCTTGACAGATACCATTATTGGAGAGTGGGATCTTCATGGATATATAGTCTCGGATTGTGACTCTCTTGAAGTTATGGTGGACGACCACAAATGGCTCAGCGACACCAAAGAGGATGCTGCTGCACAAGCTTTGAAAGCAGGTATGGATTTAGACTGTGGAGACTACTACCCAAACTTCACTCAAAGTTCAGTTAGGCAAGGGAAGGTGAAGGAGGTAGAAATCGACCGATCACTCAAGAACCTTTATGTGGTGCTTATGAGGCTAGGTTTCTTCGATGGGAATCCCACGTTTAAGTCTCTTGGCAAGAAGGATGTGTGCTCCAAACAACATATTGAATTAGCAACAGAAGCAGCAAGGGAAGGAATCGTTTTATTGAAAAATGTCAATGAAACTTTGCCGTCGAAATTGAAGAAAATAAAAAAACTAGCCATCGTCGGGCCTCATGCCAATGCTACTGCAGCAATGATTGGAAACTATGCAGGTATTGAATCTAAAAATGCTCTTGAATTAAGTTCGACATCTCCAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

422

Amino Acids

46.39

Weight (kDa)

5.49

Isoelectric Point (pI)

27.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	205 - 325	8.2e-13	Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3_C	PF01915	367 - 406	8.6e-06	Glycosyl hydrolase family 3 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09700
fragaria_vesca	FvH4_3g05990
malus_domestica	MD05G1287500.v1.1 MD05G1287700.v1.1 MD05G1288600.v1.1 MD10G1264800.v1.1 MD17G1089800.v1.1
prunus_persica	Prupe.4G077200_v2.0.a1
pyrus_communis	pycom05g26600
rosa_chinensis	RchiOBHm_Chr5g0013421
rosa_laevigata	RLG00000032018
rosa_multiflora	Rmu_sc0003458.1_g000016 Rmu_sc0003458.1_g000017
rosa_roxburghii	Rroxscaffold_1G00063140
rosa_rugosa	Rorug05G0009200 Rorug05G0009300
rosa_samantha	Rh5AG104600 Rh5BG100900 Rh5CG112800 Rh5DG099500
rosa_wichuraiana	Rw5G009120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	699
Acc36I	ACCTGC	2 cut(s)	863, 1205
AccI	GTMKAC	1 cut(s)	567
AciI	CCGC	2 cut(s)	248, 420
AclI	AACGTT	1 cut(s)	528
AclWI	GGATC	5 cut(s)	131, 539, 552, 719, 771
AdeI	CACNNNGTG	1 cut(s)	340
AfaI	GTAC	1 cut(s)	488
AfiI	CCNNNNNNNGG	4 cut(s)	163, 296, 982, 1170
AflIII	ACRYGT	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	605
AluBI	AGCT	3 cut(s)	265, 396, 863
AluI	AGCT	3 cut(s)	265, 396, 863
Alw21I	GWGCWC	2 cut(s)	695, 1055
Alw26I	GTCTC	3 cut(s)	787, 888, 1035
AlwI	GGATC	5 cut(s)	131, 539, 552, 719, 771
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	2 cut(s)	216, 1172
ApeKI	GCWGC	6 cut(s)	262, 422, 851, 854, 1085, 1193
Asp700I	GAANNNNTTC	1 cut(s)	635
AspLEI	GCGC	1 cut(s)	389
AspS9I	GGNCC	4 cut(s)	216, 321, 353, 1172
AsuC2I	CCSGG	3 cut(s)	357, 358, 384
AsuHPI	GGTGA	2 cut(s)	622, 952
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	2 cut(s)	321, 353
BamHI	GGATCC	1 cut(s)	544
Bbv12I	GWGCWC	2 cut(s)	695, 1055
BbvI	GCAGC	6 cut(s)	274, 434, 838, 841, 1097, 1205
BccI	CCATC	3 cut(s)	662, 1004, 1172
BceAI	ACGGC	1 cut(s)	1117
BcgI	CGANNNNNNTGC	2 cut(s)	538, 572
BciT130I	CCWGG	1 cut(s)	607
BcnI	CCSGG	3 cut(s)	357, 358, 384
BcoDI	GTCTC	3 cut(s)	787, 888, 1035
BfaI	CTAG	3 cut(s)	80, 998, 1160
BfmI	CTRYAG	1 cut(s)	1191
BfuAI	ACCTGC	2 cut(s)	863, 1205
BisI	GCNGC	6 cut(s)	263, 423, 852, 855, 1086, 1194
BlpI	GCTNAGC	1 cut(s)	830
BlsI	GCNGC	6 cut(s)	264, 424, 853, 856, 1087, 1195
Bme1390I	CCNGG	4 cut(s)	357, 358, 384, 607
Bme18I	GGWCC	2 cut(s)	321, 353
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	4 cut(s)	216, 321, 353, 1172
BmiI	GGNNCC	3 cut(s)	288, 355, 546
BmrFI	CCNGG	4 cut(s)	357, 358, 384, 607
BmsI	GCATC	2 cut(s)	592, 838
Bpu1102I	GCTNAGC	1 cut(s)	830
BpuEI	CTTGAG	1 cut(s)	953
BpuMI	CCSGG	3 cut(s)	357, 358, 384
BsaBI	GATNNNNATC	1 cut(s)	1014
BsaJI	CCNNGG	6 cut(s)	219, 290, 324, 334, 356, 606
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 296, 982, 1170
Bse1I	ACTGG	3 cut(s)	249, 433, 578
Bse3DI	GCAATG	2 cut(s)	39, 1203
Bse8I	GATNNNNATC	1 cut(s)	1014
BseBI	CCWGG	1 cut(s)	607
BseDI	CCNNGG	6 cut(s)	219, 290, 324, 334, 356, 606
BseGI	GGATG	6 cut(s)	243, 568, 673, 679, 853, 1051
BseJI	GATNNNNATC	1 cut(s)	1014
BseLI	CCNNNNNNNGG	4 cut(s)	163, 296, 982, 1170
BseMI	GCAATG	2 cut(s)	39, 1203
BseMII	CTCAG	1 cut(s)	844
BseNI	ACTGG	3 cut(s)	249, 433, 578
BseXI	GCAGC	6 cut(s)	274, 434, 838, 841, 1097, 1205
BsgI	GTGCAG	1 cut(s)	840
Bsh1285I	CGRYCG	1 cut(s)	961
BshFI	GGCC	2 cut(s)	218, 1174
BsiEI	CGRYCG	1 cut(s)	961
BsiHKAI	GWGCWC	2 cut(s)	695, 1055
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	4 cut(s)	69, 357, 383, 504
BslFI	GGGAC	3 cut(s)	339, 373, 507
BslI	CCNNNNNNNGG	4 cut(s)	163, 296, 982, 1170
BsmAI	GTCTC	3 cut(s)	787, 888, 1035
BsmFI	GGGAC	3 cut(s)	339, 373, 507
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	2 cut(s)	218, 1174
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	2 cut(s)	695, 1055
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	7 cut(s)	136, 373, 544, 586, 724, 763, 962
Bsp1720I	GCTNAGC	1 cut(s)	830
BspACI	CCGC	2 cut(s)	248, 420
BspANI	GGCC	2 cut(s)	218, 1174
BspCNI	CTCAG	1 cut(s)	843
BspLI	GGNNCC	3 cut(s)	288, 355, 546
BspMAI	CTGCAG	1 cut(s)	1195
BspMI	ACCTGC	2 cut(s)	863, 1205
BspPI	GGATC	5 cut(s)	131, 539, 552, 719, 771
BspQI	GCTCTTC	1 cut(s)	493
BsrDI	GCAATG	2 cut(s)	39, 1203
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	3 cut(s)	249, 433, 578
BssECI	CCNNGG	6 cut(s)	219, 290, 324, 334, 356, 606
BssMI	GATC	7 cut(s)	136, 373, 544, 586, 724, 763, 962
BssT1I	CCWWGG	2 cut(s)	219, 290
Bst2UI	CCWGG	1 cut(s)	607
Bst4CI	ACNGT	4 cut(s)	338, 406, 704, 890
Bst6I	CTCTTC	2 cut(s)	67, 493
BstAUI	TGTACA	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	100, 557
BstDEI	CTNAG	1 cut(s)	830
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	6 cut(s)	243, 568, 673, 679, 853, 1051
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	7 cut(s)	139, 376, 547, 589, 727, 766, 965
BstMAI	GTCTC	3 cut(s)	787, 888, 1035
BstMBI	GATC	7 cut(s)	136, 373, 544, 586, 724, 763, 962
BstMCI	CGRYCG	1 cut(s)	961
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 393, 860, 869, 994, 1082, 1193
BstNI	CCWGG	1 cut(s)	607
BstNSI	RCATGY	2 cut(s)	102, 172
BstSCI	CCNGG	4 cut(s)	355, 356, 382, 605
BstSFI	CTRYAG	1 cut(s)	1191
BstV1I	GCAGC	6 cut(s)	274, 434, 838, 841, 1097, 1205
BstX2I	RGATCY	2 cut(s)	544, 763
BstXI	CCANNNNNNTGG	1 cut(s)	226
BstYI	RGATCY	2 cut(s)	544, 763
BsuRI	GGCC	2 cut(s)	218, 1174
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	6 cut(s)	243, 568, 673, 679, 853, 1051
BtsI	GCAGTG	1 cut(s)	688
BtsIMutI	CAGTG	3 cut(s)	242, 402, 688
BveI	ACCTGC	2 cut(s)	863, 1205
Cac8I	GCNNGC	2 cut(s)	100, 557
CfoI	GCGC	1 cut(s)	389
Cfr13I	GGNCC	4 cut(s)	216, 321, 353, 1172
Cfr9I	CCCGGG	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	487
CspCI	CAANNNNNGTGG	2 cut(s)	91, 126
CviAII	CATG	6 cut(s)	99, 128, 169, 484, 770, 1178
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	1 cut(s)	830
DpnI	GATC	7 cut(s)	138, 375, 546, 588, 726, 765, 964
DpnII	GATC	7 cut(s)	136, 373, 544, 586, 724, 763, 962
DraIII	CACNNNGTG	1 cut(s)	340
Eam1104I	CTCTTC	2 cut(s)	67, 493
EarI	CTCTTC	2 cut(s)	67, 493
EciI	GGCGGA	1 cut(s)	263
Eco130I	CCWWGG	2 cut(s)	219, 290
Eco47I	GGWCC	2 cut(s)	321, 353
Eco88I	CYCGRG	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	605
EcoT14I	CCWWGG	2 cut(s)	219, 290
ErhI	CCWWGG	2 cut(s)	219, 290
FaeI	CATG	6 cut(s)	102, 131, 172, 487, 773, 1181
FaqI	GGGAC	3 cut(s)	339, 373, 507
FatI	CATG	6 cut(s)	98, 127, 168, 483, 769, 1177
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	6 cut(s)	263, 423, 852, 855, 1086, 1194
FokI	GGATG	6 cut(s)	250, 575, 680, 686, 860, 1058
Fsp4HI	GCNGC	6 cut(s)	263, 423, 852, 855, 1086, 1194
FspBI	CTAG	3 cut(s)	80, 998, 1160
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	6 cut(s)	263, 423, 852, 855, 1086, 1194
HaeIII	GGCC	2 cut(s)	218, 1174
HapII	CCGG	4 cut(s)	69, 357, 383, 504
HhaI	GCGC	1 cut(s)	389
Hin1II	CATG	6 cut(s)	102, 131, 172, 487, 773, 1181
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HindIII	AAGCTT	2 cut(s)	394, 861
HinfI	GANTC	8 cut(s)	75, 83, 191, 520, 794, 1015, 1098, 1223
HpaII	CCGG	4 cut(s)	69, 357, 383, 504
HphI	GGTGA	2 cut(s)	622, 952
Hpy166II	GTNNAC	2 cut(s)	568, 814
Hpy188I	TCNGA	6 cut(s)	154, 325, 497, 549, 729, 787
Hpy188III	TCNNGA	5 cut(s)	652, 736, 800, 970, 1238
Hpy8I	GTNNAC	2 cut(s)	568, 814
Hpy99I	CGWCG	2 cut(s)	1138, 1172
HpyAV	CCTTC	6 cut(s)	150, 187, 931, 937, 1036, 1088
HpyCH4III	ACNGT	4 cut(s)	338, 406, 704, 890
HpyCH4IV	ACGT	3 cut(s)	528, 1022, 1262
HpyCH4V	TGCA	7 cut(s)	98, 102, 278, 559, 857, 1193, 1214
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 393, 860, 869, 994, 1082, 1193
HpyF3I	CTNAG	1 cut(s)	830
HpySE526I	ACGT	3 cut(s)	528, 1022, 1262
Hsp92II	CATG	6 cut(s)	102, 131, 172, 487, 773, 1181
HspAI	GCGC	1 cut(s)	387
Kzo9I	GATC	7 cut(s)	136, 373, 544, 586, 724, 763, 962
LguI	GCTCTTC	1 cut(s)	493
LmnI	GCTCC	2 cut(s)	616, 1058
Lsp1109I	GCAGC	6 cut(s)	274, 434, 838, 841, 1097, 1205
LweI	GCATC	2 cut(s)	592, 838
MaeI	CTAG	3 cut(s)	80, 998, 1160
MaeII	ACGT	3 cut(s)	528, 1022, 1262
MaeIII	GTNAC	4 cut(s)	28, 590, 610, 791
MalI	GATC	7 cut(s)	138, 375, 546, 588, 726, 765, 964
MboI	GATC	7 cut(s)	136, 373, 544, 586, 724, 763, 962
MboII	GAAGA	6 cut(s)	51, 84, 510, 758, 997, 1156
MfeI	CAATTG	1 cut(s)	106
MflI	RGATCY	2 cut(s)	544, 763
MhlI	GDGCHC	2 cut(s)	695, 1055
MluCI	AATT	5 cut(s)	106, 450, 1070, 1139, 1241
MlyI	GAGTC	5 cut(s)	77, 84, 185, 529, 788
MnlI	CCTC	7 cut(s)	319, 534, 545, 838, 940, 987, 1185
MroXI	GAANNNNTTC	1 cut(s)	635
MseI	TTAA	5 cut(s)	531, 663, 708, 1026, 1244
MslI	CAYNNNNRTG	3 cut(s)	132, 600, 1182
MspI	CCGG	4 cut(s)	69, 357, 383, 504
MspR9I	CCNGG	4 cut(s)	357, 358, 384, 607
MunI	CAATTG	1 cut(s)	106
Mva1269I	GAATGC	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	607
MwoI	GCNNNNNNNGC	7 cut(s)	50, 393, 860, 869, 994, 1082, 1193
NciI	CCSGG	3 cut(s)	357, 358, 384
NdeII	GATC	7 cut(s)	136, 373, 544, 586, 724, 763, 962
NlaIII	CATG	6 cut(s)	102, 131, 172, 487, 773, 1181
NlaIV	GGNNCC	3 cut(s)	288, 355, 546
NmuCI	GTSAC	2 cut(s)	610, 791
NspI	RCATGY	2 cut(s)	102, 172
PaeI	GCATGC	1 cut(s)	102
PciI	ACATGT	1 cut(s)	168
PciSI	GCTCTTC	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PctI	GAATGC	1 cut(s)	425
PdmI	GAANNNNTTC	1 cut(s)	635
PfeI	GAWTC	3 cut(s)	1015, 1098, 1223
PkrI	GCNGC	6 cut(s)	264, 424, 853, 856, 1087, 1195
PleI	GAGTC	5 cut(s)	77, 83, 185, 528, 788
PpsI	GAGTC	5 cut(s)	77, 83, 185, 528, 788
PscI	ACATGT	1 cut(s)	168
PsiI	TTATAA	1 cut(s)	699
Psp1406I	AACGTT	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	605
PspGI	CCWGG	1 cut(s)	605
PspN4I	GGNNCC	3 cut(s)	288, 355, 546
PspPI	GGNCC	4 cut(s)	216, 321, 353, 1172
PstI	CTGCAG	1 cut(s)	1195
PsuI	RGATCY	2 cut(s)	544, 763
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
RseI	CAYNNNNRTG	3 cut(s)	132, 600, 1182
SapI	GCTCTTC	1 cut(s)	493
SaqAI	TTAA	5 cut(s)	531, 663, 708, 1026, 1244
SatI	GCNGC	6 cut(s)	263, 423, 852, 855, 1086, 1194
Sau3AI	GATC	7 cut(s)	136, 373, 544, 586, 724, 763, 962
Sau96I	GGNCC	4 cut(s)	216, 321, 353, 1172
SchI	GAGTC	5 cut(s)	77, 84, 185, 529, 788
ScrFI	CCNGG	4 cut(s)	357, 358, 384, 607
SduI	GDGCHC	2 cut(s)	695, 1055
SfaNI	GCATC	2 cut(s)	592, 838
SfcI	CTRYAG	1 cut(s)	1191
SinI	GGWCC	2 cut(s)	321, 353
SmaI	CCCGGG	1 cut(s)	358
SmiMI	CAYNNNNRTG	3 cut(s)	132, 600, 1182
SmlI	CTYRAG	1 cut(s)	968
SmoI	CTYRAG	1 cut(s)	968
SphI	GCATGC	1 cut(s)	102
Sse9I	AATT	5 cut(s)	106, 450, 1070, 1139, 1241
SsiI	CCGC	2 cut(s)	248, 420
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	3 cut(s)	80, 998, 1160
StyD4I	CCNGG	4 cut(s)	355, 356, 382, 605
StyI	CCWWGG	2 cut(s)	219, 290
TaaI	ACNGT	4 cut(s)	338, 406, 704, 890
TaiI	ACGT	3 cut(s)	531, 1025, 1265
TaqI	TCGA	7 cut(s)	86, 369, 651, 957, 1008, 1136, 1250
TaqII	GACCGA	1 cut(s)	975
TasI	AATT	5 cut(s)	106, 450, 1070, 1139, 1241
TatI	WGTACW	1 cut(s)	486
TfiI	GAWTC	3 cut(s)	1015, 1098, 1223
Tru1I	TTAA	5 cut(s)	531, 663, 708, 1026, 1244
Tru9I	TTAA	5 cut(s)	531, 663, 708, 1026, 1244
TscAI	CASTG	3 cut(s)	249, 409, 688
TseFI	GTSAC	2 cut(s)	610, 791
TseI	GCWGC	6 cut(s)	262, 422, 851, 854, 1085, 1193
Tsp45I	GTSAC	2 cut(s)	610, 791
TspDTI	ATGAA	2 cut(s)	758, 1137
TspGWI	ACGGA	1 cut(s)	629
TspMI	CCCGGG	1 cut(s)	356
TspRI	CASTG	3 cut(s)	249, 409, 688
VpaK11BI	GGWCC	2 cut(s)	321, 353
XceI	RCATGY	2 cut(s)	102, 172
XmaI	CCCGGG	1 cut(s)	356
XmiI	GTMKAC	1 cut(s)	567
XmnI	GAANNNNTTC	1 cut(s)	635
XspI	CTAG	3 cut(s)	80, 998, 1160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.