Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005890

Physical Location & Seq

Genomic Coordinates Reverse (-)

4277800 .. 4285692

Gene Structure 7893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g07230.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3399 bp

ATGACCAGGGCTGTCCGAGATAGGATTCTCAAGGATGCAAATGGTGACATTAGTGATCATCTGCGCAACCACATTCATTTGACAAATTGCATTCACTTGAAGAACCATATGCACAAGCACAGCCCCATATTGGCCGATAGGTCTCTTATGAGGGACTTGGTTGTCCTTCAGAGGTCTCGATCTCTCAGGGACCCCTCTGCGAGCCCTCCTTCATGGCAGTCTCCTTCCATTGTTGAAATGCTTTCCAAGAAAGGTGAAAACGGTCCCTTGGTGCGGGAGGGGAGAAGGTCAGTAGGAAGTGAGCATCGAAGGGAAGGTAGGAGGTTGTTGGCAAGTTCTCCACCTTTAGCAAGTTTTGGAACATCAAGAGTTGCTCCAGATGAAGCTAATGGGGAGAATGATGGGTTAGCTGGAGTCAGTGAACATGGTAGCAAGAGTGGAGTGAGAGATGGTAGAAGGATCAGAAGAGAAGAGTCTAGTCAGAAGAGCTATAAGAGTGATATTTTGGGCAGCAAAGAGGAGTCTCCCCTAAACCAAAATGGTCATGATTTAACTCATGATACTGTTTCTCGAAATTCAGAATCAAAAAGTAGAAAAAGTAAACAAAAGGGAAAGCACATCCAAGGTGTTCAGATGAAGACTCTCTCGGAGCAATTGAATGAAGTTAGGATGGATAGTGATGATTTAGCATCGTCCAACATTCATCTACCTGGAAGACGGTTACGTCAAGAAAGAATTGTTGAGGAACCGGCAGCCAGCATTCGAGGCAGTTGCAGTGGACTGAGTAGGGTAAAACGGCGGAGATTTCGTGGTGCAAGAAGAAGCCGTGCTTCTGTAGCTTCCAGAGACATTGGAGCTCATAATGATTTGTCTGTGGCTTCTAATACTGTAGGTCATAGGTCAGGTCACTCAAAGTATCACATGGAGCAGGAGCAGGGAGAGGATGAGTATGAGGAGCAAAATGTTACAAGGGCTCCTGGAAATGGGTGTGGGATTCCATGGAATTGGTCAAGGATCCACCATAGAGGAAAATCATTCCTTGACATAGCTGGAAGGAGTTTTTCATGTGGCATGTCTGATTCAAGGTTTAAGAAAGGTGATCTGGCTGCTCATGGCAGAGATATTTCTGATATGCCTATGGCCTCTGATAACTCAAGCTCTTCTACTAAATATGATGCTGAGGCATTGCCTTTACTAGTTGATGCATCTGGATCACAGGAAAGCACTCGTTGGGCACACGACTACTCTGGCGAACTAGGCATATATGCTGATAATCTATTCAAGAATGATGTAGGTTCTGAATATGCTTCTGAAGCTAGATCTGGCGTTCAACACAAATTGAGAGTGCACCGCCATGGCAGACACCAAAATCTGACGCAGAAGTACATGCCAAAAACCTTTAGAGATCTTGTGGGACAGAATTTAGTGGTGCAAGCTCTTTCCAATGCTGTCATGAAAAAGAAGGTTGGGTTGCTCTATGTATTCTATGGTCCTCATGGTACAGGAAAAACATCATGTGCTCGCATATTTGCTAGAGCTTTGAATTGCCAGTCTTTGGATCATCCAAAGCCTTGCGGCTTTTGCAATTCTTGCATTGCACATGATCTGGGTAAGAGTAGAAATATAAGGGAAGTTGGCCCTGTTAGTAATTTTGACTTTGAGAGCATTGTGGACCTACTTGACAATATGAGTATTTCCCAGCAGCCATCACAGTACAGAGTGTTCATTTTCGATGACTGTGATACTTTATCCCAGGAGTACTGGAGTGTCATATCAAAGGTCATTGATCAAGCACCCAGACGTGTGGTTTTTGTCCTTGTCTGTTCAAGTCTTGATGTTTTGCCTCACATAATCATATCCAGGTGTCAGAAATTCTTTTTCCCAAAGCTAAAGGATGCAGACATTATCTACACTTTGCAATGGATTGCAACCAAAGATAACTTAGAAATTGACAAGGATGCACTAAAACTTATTGCGTCAAGATCAGATGGTTCATTGAGGGATGCTGAAATGACTCTTGAGCAACTGAGTTTGCTTGGCCAGAGAATCTCTGTTCCTCTAGTTCAGGAACTAGTTGGGCTTATCTCTGATGAGAGATTGGTGGATCTTCTTGATTTAGCATTATCTGCCGACACAGTTAATACTGTGAAGAATTTGAGAATGATAATGGAAAGTGGTGTTGAGCCATTAGCCCTGATGTCACAACTTGCAACAGTCATTACAGATATACTTGCTGGCTGCTATGATTATACCAAAGAAGGGCGTAGAAGGAAGTTCTTCCGGCACCAACCATTATCCAAAGAAGACATGGAGAAACTACGTCAAGCTTTGAAAACTTTGTCTGAGGCTGAAAAGCAATTGAGGACATCAAATGACAAGTTAACATGGCTAACAGCTGCACTTCTCCAACTTGCTCCTGATCAGCAGTACATGTTGCCTAGTTCTTCTGCAGGCACTAGCAATCACAGTCCTTTGGCCTTAAATAATGCTGGTGGAAGGGATGTTCCTAGTTATGACAGAGGCTTGCCCACAAATGTTAGAAATGCAGGAAGTTCTGGTCTCAGAAAAAGTCATGCTGGGGATAGTATGGCTAAAGCTACAAACTCTGCTGATATAGTAAAAGGGAGTGGGAGGAATAGTGTTGACAGAAGCTATAAAGCAATTGAAGAAATTTGGTTGGAGGTGCTTGAGAAAATTCCATATAATCGCATAAAAGAGTTTTTGTACCAAGAAGGGAAGCTAATCTCAGTCAGTTTTGGTGCAGCTCCCACCGTGCAGTTGATGTTCTCCTCACATATGACTAAATCTACAGCAGAGAAGTTTAGAGCACAGATTTTACACGCGTTCGAGATGGTTCTTGGGTCTCCCATGACAGTTGAAATACGAAGTCTGTCTAAAAAAGATACCAAGGAAGGGGCCCAGAAGCCTATTATCATACCCGATGCCCAGCACCTACACTCTGACACCCACAAAATGGGGAAGAGTGAAATTGTTGAGGTAGCTGCTTCTCCTAGGGACGGCAAGGGTGGTGGTCATATTGATAACCATAAAGAATCTAGTGCGCGGGTGGGAGAAGCATCTATACAACATAAAATTGGGGAACAAAGTCAGAGTCTAAGCCTCGTCAGGGGCAAGGTGTCCCTCGCACATGTAATTCAACAGGCAGAAGGATGCTCACAGCGCAGTGGATGGTCACAACGCAAAGCCGTTTCTATTGCTGAAAAGCTTGAACAAGATAATTTGAGATTGGAATCTCAATCGAGAAGTTTGATTTGCTGGAAAGCATCCAGAGTAGCTCGTCGAAAGCTTTCCCGTTTGAAAATGAGGACAAGGAGGCCACATTCACTACTGAAGCTTGTTTCTTGTGGCAAGTGTCTCACATCAAGATCTCCAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

1133

Amino Acids

125.95

Weight (kDa)

9.51

Isoelectric Point (pI)

54.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol3_delta2	PF13177	473 - 630	3.1e-22	DNA polymerase III, delta subunit
AAA	PF00004	494 - 627	2.3e-06	ATPase family associated with various cellular activities (AAA)
DNAX_ATPase_lid	PF22608	637 - 683	6.8e-06	DNA polymerase III clamp loader subunit, ATPase lid domain
DNA_pol3_gamma3	PF12169	686 - 809	1.9e-06	DNA polymerase III subunits gamma and tau domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18820
fragaria_vesca	FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230
malus_domestica	MD00G1008200.v1.1 MD10G1274700.v1.1
prunus_persica	Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1
pyrus_communis	pycom05g27350 pycom10g22920
rosa_chinensis	RchiOBHm_Chr5g0011921
rosa_laevigata	RLG00000031869
rosa_multiflora	Rmu_sc0001475.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064670
rosa_rugosa	Rorug04G0460000 Rorug04G0460100
rosa_samantha	Rh5AG091500 Rh5BG087300 Rh5CG101200 Rh5DG087900
rosa_wichuraiana	Rw5G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	161, 723
Acc16I	TGCGCA	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	2283
AccB7I	CCANNNNNTGG	2 cut(s)	1555, 2974
AccII	CGCG	2 cut(s)	2843, 3064
AciI	CCGC	5 cut(s)	274, 799, 1351, 1575, 3064
AclWI	GGATC	6 cut(s)	467, 1009, 1022, 1219, 1566, 2112
AcoI	YGGCCR	2 cut(s)	132, 2038
AcsI	RAATTY	6 cut(s)	574, 1420, 1871, 2152, 2670, 2694
AcuI	CTGAAG	3 cut(s)	152, 1332, 3371
AfaI	GTAC	6 cut(s)	1385, 1501, 1715, 1760, 2429, 2726
AfiI	CCNNNNNNNGG	9 cut(s)	130, 273, 983, 1555, 2259, 2913, 2974, 3017, 3127
AflIII	ACRYGT	4 cut(s)	1801, 2430, 2841, 3148
AhlI	ACTAGT	2 cut(s)	1195, 2071
AjiI	CACGTC	1 cut(s)	1802
AjnI	CCWGG	5 cut(s)	5, 709, 976, 1752, 1859
AloI	GAACNNNNNNTCC	2 cut(s)	2487, 2519
Alw21I	GWGCWC	4 cut(s)	859, 1350, 1522, 2830
Alw26I	GTCTC	8 cut(s)	147, 180, 225, 528, 840, 2564, 2868, 3380
Alw44I	GTGCAC	1 cut(s)	1346
AlwI	GGATC	6 cut(s)	467, 1009, 1022, 1219, 1566, 2112
AoxI	GGCC	7 cut(s)	132, 1140, 1636, 2038, 2475, 2916, 3335
ApaI	GGGCCC	1 cut(s)	2920
ApaLI	GTGCAC	1 cut(s)	1346
ApeKI	GCWGC	8 cut(s)	510, 752, 1106, 1702, 2238, 2396, 2762, 3002
ApoI	RAATTY	6 cut(s)	574, 1420, 1871, 2152, 2670, 2694
ArsI	GACNNNNNNTTYG	2 cut(s)	3097, 3129
Asp700I	GAANNNNTTC	2 cut(s)	2276, 3307
AspA2I	CCTAGG	1 cut(s)	3011
AspLEI	GCGC	3 cut(s)	66, 3064, 3183
AspS9I	GGNCC	7 cut(s)	190, 263, 1490, 1637, 1672, 2916, 2917
AsuHPI	GGTGA	3 cut(s)	56, 266, 1109
AvaII	GGWCC	4 cut(s)	190, 263, 1490, 1672
AvrII	CCTAGG	1 cut(s)	3011
BaeGI	GKGCMC	3 cut(s)	1237, 1350, 2920
BalI	TGGCCA	1 cut(s)	2040
BamHI	GGATCC	1 cut(s)	1014
BanI	GGYRCC	1 cut(s)	2283
BanII	GRGCYC	4 cut(s)	206, 859, 976, 2920
BarI	GAAGNNNNNNTAC	2 cut(s)	3066, 3098
BbsI	GAAGAC	3 cut(s)	644, 721, 2310
Bbv12I	GWGCWC	4 cut(s)	859, 1350, 1522, 2830
BbvCI	CCTCAGC	1 cut(s)	1179
BbvI	GCAGC	8 cut(s)	522, 764, 1093, 1714, 2225, 2383, 2774, 2989
BccI	CCATC	7 cut(s)	395, 443, 664, 1714, 1982, 2845, 3183
BceAI	ACGGC	4 cut(s)	810, 812, 3034, 3191
BcgI	CGANNNNNNTGC	2 cut(s)	753, 787
BciT130I	CCWGG	5 cut(s)	7, 711, 978, 1754, 1861
BclI	TGATCA	3 cut(s)	55, 1786, 2419
BcoDI	GTCTC	8 cut(s)	147, 180, 225, 528, 840, 2564, 2868, 3380
BcuI	ACTAGT	2 cut(s)	1195, 2071
BfmI	CTRYAG	4 cut(s)	834, 888, 2448, 2808
BglII	AGATCT	3 cut(s)	1319, 1405, 3386
BisI	GCNGC	9 cut(s)	511, 753, 1107, 1576, 1703, 2239, 2397, 2763, 3003
BlnI	CCTAGG	1 cut(s)	3011
BlsI	GCNGC	9 cut(s)	512, 754, 1108, 1577, 1704, 2240, 2398, 2764, 3004
BmcAI	AGTACT	1 cut(s)	1760
Bme1390I	CCNGG	5 cut(s)	7, 711, 978, 1754, 1861
Bme18I	GGWCC	4 cut(s)	190, 263, 1490, 1672
BmgBI	CACGTC	1 cut(s)	1802
BmgT120I	GGNCC	7 cut(s)	190, 263, 1490, 1637, 1672, 2916, 2917
BmiI	GGNNCC	9 cut(s)	191, 192, 265, 747, 975, 1016, 2285, 2917, 2918
BmrFI	CCNGG	5 cut(s)	7, 711, 978, 1754, 1861
BpiI	GAAGAC	3 cut(s)	644, 721, 2310
BpmI	CTGGAG	3 cut(s)	360, 432, 1783
Bpu10I	CCTNAGC	1 cut(s)	1179
BpuEI	CTTGAG	4 cut(s)	14, 1138, 2039, 2708
BsaBI	GATNNNNATC	1 cut(s)	3250
BsaI	GGTCTC	4 cut(s)	147, 180, 2564, 2868
BsaJI	CCNNGG	9 cut(s)	6, 267, 622, 998, 1354, 1752, 2907, 3011, 3392
BsaXI	ACNNNNNCTCC	6 cut(s)	793, 823, 958, 988, 2623, 2653
Bsc4I	CCNNNNNNNGG	9 cut(s)	130, 273, 983, 1555, 2259, 2913, 2974, 3017, 3127
Bse118I	RCCGGY	1 cut(s)	748
Bse1I	ACTGG	2 cut(s)	1549, 1766
Bse3DI	GCAATG	3 cut(s)	1184, 1593, 1925
Bse8I	GATNNNNATC	1 cut(s)	3250
BseBI	CCWGG	5 cut(s)	7, 711, 978, 1754, 1861
BseDI	CCNNGG	9 cut(s)	6, 267, 622, 998, 1354, 1752, 2907, 3011, 3392
BseJI	GATNNNNATC	1 cut(s)	3250
BseLI	CCNNNNNNNGG	9 cut(s)	130, 273, 983, 1555, 2259, 2913, 2974, 3017, 3127
BseMI	GCAATG	3 cut(s)	1184, 1593, 1925
BseMII	CTCAG	7 cut(s)	199, 773, 1170, 2018, 2334, 2575, 2760
BseNI	ACTGG	2 cut(s)	1549, 1766
BseRI	GAGGAG	3 cut(s)	533, 968, 2779
BseSI	GKGCMC	3 cut(s)	1237, 1350, 2920
BseXI	GCAGC	8 cut(s)	522, 764, 1093, 1714, 2225, 2383, 2774, 2989
BseYI	CCCAGC	3 cut(s)	1698, 2576, 2946
BsgI	GTGCAG	3 cut(s)	2382, 2781, 2795
Bsh1236I	CGCG	2 cut(s)	2843, 3064
BshFI	GGCC	7 cut(s)	134, 1142, 1638, 2040, 2477, 2918, 3337
BshNI	GGYRCC	1 cut(s)	2283
BsiHKAI	GWGCWC	4 cut(s)	859, 1350, 1522, 2830
BsiSI	CCGG	2 cut(s)	749, 2281
BslFI	GGGAC	6 cut(s)	167, 203, 249, 1428, 3029, 3124
BslI	CCNNNNNNNGG	9 cut(s)	130, 273, 983, 1555, 2259, 2913, 2974, 3017, 3127
BsmAI	GTCTC	8 cut(s)	147, 180, 225, 528, 840, 2564, 2868, 3380
BsmFI	GGGAC	6 cut(s)	167, 203, 249, 1428, 3029, 3124
BsmI	GAATGC	2 cut(s)	90, 759
BsnI	GGCC	7 cut(s)	134, 1142, 1638, 2040, 2477, 2918, 3337
Bso31I	GGTCTC	4 cut(s)	147, 180, 2564, 2868
Bsp120I	GGGCCC	1 cut(s)	2916
Bsp1286I	GDGCHC	8 cut(s)	206, 859, 976, 1237, 1350, 1522, 2830, 2920
Bsp19I	CCATGG	2 cut(s)	998, 1354
BspACI	CCGC	5 cut(s)	274, 799, 1351, 1575, 3064
BspANI	GGCC	7 cut(s)	134, 1142, 1638, 2040, 2477, 2918, 3337
BspCNI	CTCAG	7 cut(s)	198, 774, 1171, 2019, 2335, 2574, 2759
BspFNI	CGCG	2 cut(s)	2843, 3064
BspHI	TCATGA	3 cut(s)	544, 556, 1452
BspLI	GGNNCC	9 cut(s)	191, 192, 265, 747, 975, 1016, 2285, 2917, 2918
BspMAI	CTGCAG	1 cut(s)	2452
BspPI	GGATC	6 cut(s)	467, 1009, 1022, 1219, 1566, 2112
BspQI	GCTCTTC	2 cut(s)	479, 1165
BspT107I	GGYRCC	1 cut(s)	2283
BspTNI	GGTCTC	4 cut(s)	147, 180, 2564, 2868
BsrDI	GCAATG	3 cut(s)	1184, 1593, 1925
BsrFI	RCCGGY	1 cut(s)	748
BsrI	ACTGG	2 cut(s)	1549, 1766
BssAI	RCCGGY	1 cut(s)	748
BssECI	CCNNGG	9 cut(s)	6, 267, 622, 998, 1354, 1752, 2907, 3011, 3392
BssT1I	CCWWGG	7 cut(s)	267, 622, 998, 1354, 2907, 3011, 3392
Bst2UI	CCWGG	5 cut(s)	7, 711, 978, 1754, 1861
Bst6I	CTCTTC	5 cut(s)	460, 465, 479, 1165, 2975
BstAPI	GCANNNNNTGC	2 cut(s)	1590, 2126
BstC8I	GCNNGC	7 cut(s)	202, 757, 1434, 1522, 2236, 2452, 2525
BstDEI	CTNAG	9 cut(s)	185, 782, 1179, 1942, 2027, 2343, 2561, 2746, 3116
BstDSI	CCRYGG	2 cut(s)	998, 1354
BstFNI	CGCG	2 cut(s)	2843, 3064
BstHHI	GCGC	3 cut(s)	66, 3064, 3183
BstMAI	GTCTC	8 cut(s)	147, 180, 225, 528, 840, 2564, 2868, 3380
BstMWI	GCNNNNNNNGC	8 cut(s)	765, 836, 1257, 1313, 1581, 1590, 2126, 3180
BstNI	CCWGG	5 cut(s)	7, 711, 978, 1754, 1861
BstNSI	RCATGY	4 cut(s)	1075, 1390, 2434, 3152
BstSCI	CCNGG	5 cut(s)	5, 709, 976, 1752, 1859
BstSFI	CTRYAG	4 cut(s)	834, 888, 2448, 2808
BstSLI	GKGCMC	3 cut(s)	1237, 1350, 2920
BstUI	CGCG	2 cut(s)	2843, 3064
BstV1I	GCAGC	8 cut(s)	522, 764, 1093, 1714, 2225, 2383, 2774, 2989
BstV2I	GAAGAC	3 cut(s)	644, 721, 2310
BstX2I	RGATCY	5 cut(s)	1014, 1319, 1405, 2104, 3386
BstXI	CCANNNNNNTGG	2 cut(s)	1005, 1804
BstYI	RGATCY	5 cut(s)	1014, 1319, 1405, 2104, 3386
BsuRI	GGCC	7 cut(s)	134, 1142, 1638, 2040, 2477, 2918, 3337
BtgI	CCRYGG	2 cut(s)	998, 1354
BtrI	CACGTC	1 cut(s)	1802
BtsI	GCAGTG	2 cut(s)	781, 3190
BtsIMutI	CAGTG	3 cut(s)	424, 781, 3190
Cac8I	GCNNGC	7 cut(s)	202, 757, 1434, 1522, 2236, 2452, 2525
CciI	TCATGA	3 cut(s)	544, 556, 1452
CfoI	GCGC	3 cut(s)	66, 3064, 3183
Cfr10I	RCCGGY	1 cut(s)	748
Cfr13I	GGNCC	7 cut(s)	190, 263, 1490, 1637, 1672, 2916, 2917
CseI	GACGC	2 cut(s)	1384, 1965
Csp6I	GTAC	6 cut(s)	1384, 1500, 1714, 1759, 2428, 2725
CspCI	CAANNNNNGTGG	2 cut(s)	3010, 3045
CviQI	GTAC	6 cut(s)	1384, 1500, 1714, 1759, 2428, 2725
DdeI	CTNAG	9 cut(s)	185, 782, 1179, 1942, 2027, 2343, 2561, 2746, 3116
DrdI	GACNNNNNNGTC	2 cut(s)	161, 723
DseDI	GACNNNNNNGTC	2 cut(s)	161, 723
EaeI	YGGCCR	2 cut(s)	132, 2038
Eam1104I	CTCTTC	5 cut(s)	460, 465, 479, 1165, 2975
EarI	CTCTTC	5 cut(s)	460, 465, 479, 1165, 2975
EciI	GGCGGA	1 cut(s)	814
Ecl136II	GAGCTC	1 cut(s)	857
Eco130I	CCWWGG	7 cut(s)	267, 622, 998, 1354, 2907, 3011, 3392
Eco24I	GRGCYC	4 cut(s)	206, 859, 976, 2920
Eco31I	GGTCTC	4 cut(s)	147, 180, 2564, 2868
Eco47I	GGWCC	4 cut(s)	190, 263, 1490, 1672
Eco53kI	GAGCTC	1 cut(s)	857
Eco57I	CTGAAG	3 cut(s)	152, 1332, 3371
EcoICRI	GAGCTC	1 cut(s)	857
EcoO109I	RGGNCCY	2 cut(s)	190, 2916
EcoRII	CCWGG	5 cut(s)	5, 709, 976, 1752, 1859
EcoT14I	CCWWGG	7 cut(s)	267, 622, 998, 1354, 2907, 3011, 3392
EcoT22I	ATGCAT	1 cut(s)	1207
EcoT38I	GRGCYC	4 cut(s)	206, 859, 976, 2920
ErhI	CCWWGG	7 cut(s)	267, 622, 998, 1354, 2907, 3011, 3392
FalI	AAGNNNNNCTT	2 cut(s)	814, 846
FaqI	GGGAC	6 cut(s)	167, 203, 249, 1428, 3029, 3124
FauI	CCCGC	2 cut(s)	267, 3057
FauNDI	CATATG	2 cut(s)	108, 2796
FbaI	TGATCA	3 cut(s)	55, 1786, 2419
Fnu4HI	GCNGC	9 cut(s)	511, 753, 1107, 1576, 1703, 2239, 2397, 2763, 3003
FriOI	GRGCYC	4 cut(s)	206, 859, 976, 2920
Fsp4HI	GCNGC	9 cut(s)	511, 753, 1107, 1576, 1703, 2239, 2397, 2763, 3003
FspI	TGCGCA	1 cut(s)	65
GlaI	GCGC	3 cut(s)	65, 3063, 3182
GluI	GCNGC	9 cut(s)	511, 753, 1107, 1576, 1703, 2239, 2397, 2763, 3003
GsaI	CCCAGC	3 cut(s)	1702, 2580, 2950
GsuI	CTGGAG	3 cut(s)	360, 432, 1783
HaeIII	GGCC	7 cut(s)	134, 1142, 1638, 2040, 2477, 2918, 3337
HapII	CCGG	2 cut(s)	749, 2281
HgaI	GACGC	2 cut(s)	1384, 1965
HhaI	GCGC	3 cut(s)	66, 3064, 3183
Hin6I	GCGC	3 cut(s)	64, 3062, 3181
HinP1I	GCGC	3 cut(s)	64, 3062, 3181
HincII	GTYRAC	2 cut(s)	2382, 2644
HindII	GTYRAC	2 cut(s)	2382, 2644
HindIII	AAGCTT	4 cut(s)	2325, 3224, 3305, 3353
HpaI	GTTAAC	1 cut(s)	2382
HpaII	CCGG	2 cut(s)	749, 2281
HphI	GGTGA	3 cut(s)	56, 266, 1109
Hpy166II	GTNNAC	7 cut(s)	422, 602, 779, 1348, 1672, 2382, 2644
Hpy8I	GTNNAC	7 cut(s)	422, 602, 779, 1348, 1672, 2382, 2644
Hpy99I	CGWCG	1 cut(s)	3303
HpyCH4IV	ACGT	3 cut(s)	724, 1801, 2320
HpyF10VI	GCNNNNNNNGC	8 cut(s)	765, 836, 1257, 1313, 1581, 1590, 2126, 3180
HpyF3I	CTNAG	9 cut(s)	185, 782, 1179, 1942, 2027, 2343, 2561, 2746, 3116
HpySE526I	ACGT	3 cut(s)	724, 1801, 2320
HspAI	GCGC	3 cut(s)	64, 3062, 3181
KflI	GGGWCCC	1 cut(s)	190
Ksp22I	TGATCA	3 cut(s)	55, 1786, 2419
KspAI	GTTAAC	1 cut(s)	2382
LguI	GCTCTTC	2 cut(s)	479, 1165
LmnI	GCTCC	9 cut(s)	379, 649, 854, 925, 931, 955, 979, 2419, 2770
Lsp1109I	GCAGC	8 cut(s)	522, 764, 1093, 1714, 2225, 2383, 2774, 2989
MaeII	ACGT	3 cut(s)	724, 1801, 2320
MaeIII	GTNAC	6 cut(s)	44, 720, 905, 964, 2199, 3192
MfeI	CAATTG	3 cut(s)	653, 2357, 2661
MflI	RGATCY	5 cut(s)	1014, 1319, 1405, 2104, 3386
MhlI	GDGCHC	8 cut(s)	206, 859, 976, 1237, 1350, 1522, 2830, 2920
MlsI	TGGCCA	1 cut(s)	2040
MluI	ACGCGT	1 cut(s)	2841
MluNI	TGGCCA	1 cut(s)	2040
MlyI	GAGTC	6 cut(s)	423, 482, 530, 634, 2008, 3121
MmeI	TCCRAC	3 cut(s)	720, 2431, 2658
Mox20I	TGGCCA	1 cut(s)	2040
Mph1103I	ATGCAT	1 cut(s)	1207
MroXI	GAANNNNTTC	2 cut(s)	2276, 3307
MscI	TGGCCA	1 cut(s)	2040
MseI	TTAA	5 cut(s)	551, 1089, 2139, 2381, 2480
MslI	CAYNNNNRTG	1 cut(s)	1353
Msp20I	TGGCCA	1 cut(s)	2040
MspA1I	CMGCKG	1 cut(s)	2396
MspI	CCGG	2 cut(s)	749, 2281
MspR9I	CCNGG	5 cut(s)	7, 711, 978, 1754, 1861
MunI	CAATTG	3 cut(s)	653, 2357, 2661
Mva1269I	GAATGC	2 cut(s)	90, 759
MvaI	CCWGG	5 cut(s)	7, 711, 978, 1754, 1861
MvnI	CGCG	2 cut(s)	2843, 3064
MwoI	GCNNNNNNNGC	8 cut(s)	765, 836, 1257, 1313, 1581, 1590, 2126, 3180
NcoI	CCATGG	2 cut(s)	998, 1354
NdeI	CATATG	2 cut(s)	108, 2796
NlaIV	GGNNCC	9 cut(s)	191, 192, 265, 747, 975, 1016, 2285, 2917, 2918
NmuCI	GTSAC	4 cut(s)	44, 905, 2199, 3192
NsbI	TGCGCA	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	1207
NspI	RCATGY	4 cut(s)	1075, 1390, 2434, 3152
PagI	TCATGA	3 cut(s)	544, 556, 1452
PciI	ACATGT	2 cut(s)	2430, 3148
PciSI	GCTCTTC	2 cut(s)	479, 1165
PctI	GAATGC	2 cut(s)	90, 759
PdmI	GAANNNNTTC	2 cut(s)	2276, 3307
PfeI	GAWTC	7 cut(s)	25, 581, 994, 1079, 2046, 3053, 3251
PflMI	CCANNNNNTGG	2 cut(s)	1555, 2974
PfoI	TCCNGGA	1 cut(s)	976
PkrI	GCNGC	9 cut(s)	512, 754, 1108, 1577, 1704, 2240, 2398, 2764, 3004
PleI	GAGTC	6 cut(s)	422, 481, 529, 634, 2008, 3120
PpsI	GAGTC	6 cut(s)	422, 481, 529, 634, 2008, 3120
PpuMI	RGGWCCY	1 cut(s)	190
PscI	ACATGT	2 cut(s)	2430, 3148
Psp124BI	GAGCTC	1 cut(s)	859
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	5 cut(s)	5, 709, 976, 1752, 1859
PspFI	CCCAGC	3 cut(s)	1698, 2576, 2946
PspGI	CCWGG	5 cut(s)	5, 709, 976, 1752, 1859
PspN4I	GGNNCC	9 cut(s)	191, 192, 265, 747, 975, 1016, 2285, 2917, 2918
PspOMI	GGGCCC	1 cut(s)	2916
PspPI	GGNCC	7 cut(s)	190, 263, 1490, 1637, 1672, 2916, 2917
PspPPI	RGGWCCY	1 cut(s)	190
PsrI	GAACNNNNNNTAC	2 cut(s)	1706, 1738
PstI	CTGCAG	1 cut(s)	2452
PsuI	RGATCY	5 cut(s)	1014, 1319, 1405, 2104, 3386
PvuII	CAGCTG	1 cut(s)	2396
RsaI	GTAC	6 cut(s)	1385, 1501, 1715, 1760, 2429, 2726
RsaNI	GTAC	6 cut(s)	1384, 1500, 1714, 1759, 2428, 2725
RseI	CAYNNNNRTG	1 cut(s)	1353
SacI	GAGCTC	1 cut(s)	859
SapI	GCTCTTC	2 cut(s)	479, 1165
SaqAI	TTAA	5 cut(s)	551, 1089, 2139, 2381, 2480
SatI	GCNGC	9 cut(s)	511, 753, 1107, 1576, 1703, 2239, 2397, 2763, 3003
Sau96I	GGNCC	7 cut(s)	190, 263, 1490, 1637, 1672, 2916, 2917
ScaI	AGTACT	1 cut(s)	1760
SchI	GAGTC	6 cut(s)	423, 482, 530, 634, 2008, 3121
ScrFI	CCNGG	5 cut(s)	7, 711, 978, 1754, 1861
SduI	GDGCHC	8 cut(s)	206, 859, 976, 1237, 1350, 1522, 2830, 2920
SfcI	CTRYAG	4 cut(s)	834, 888, 2448, 2808
SinI	GGWCC	4 cut(s)	190, 263, 1490, 1672
SmiMI	CAYNNNNRTG	1 cut(s)	1353
SmlI	CTYRAG	4 cut(s)	29, 1153, 2018, 2687
SmoI	CTYRAG	4 cut(s)	29, 1153, 2018, 2687
SpeI	ACTAGT	2 cut(s)	1195, 2071
SsiI	CCGC	5 cut(s)	274, 799, 1351, 1575, 3064
SstI	GAGCTC	1 cut(s)	859
StyD4I	CCNGG	5 cut(s)	5, 709, 976, 1752, 1859
StyI	CCWWGG	7 cut(s)	267, 622, 998, 1354, 2907, 3011, 3392
TaiI	ACGT	3 cut(s)	727, 1804, 2323
TaqI	TCGA	8 cut(s)	178, 307, 571, 763, 1731, 2847, 3260, 3301
TatI	WGTACW	4 cut(s)	1383, 1713, 1758, 2427
TauI	GCSGC	1 cut(s)	1578
TfiI	GAWTC	7 cut(s)	25, 581, 994, 1079, 2046, 3053, 3251
Tru1I	TTAA	5 cut(s)	551, 1089, 2139, 2381, 2480
Tru9I	TTAA	5 cut(s)	551, 1089, 2139, 2381, 2480
TscAI	CASTG	3 cut(s)	424, 781, 3190
TseFI	GTSAC	4 cut(s)	44, 905, 2199, 3192
TseI	GCWGC	8 cut(s)	510, 752, 1106, 1702, 2238, 2396, 2762, 3002
Tsp45I	GTSAC	4 cut(s)	44, 905, 2199, 3192
TspRI	CASTG	3 cut(s)	424, 781, 3190
Van91I	CCANNNNNTGG	2 cut(s)	1555, 2974
VneI	GTGCAC	1 cut(s)	1346
VpaK11BI	GGWCC	4 cut(s)	190, 263, 1490, 1672
XapI	RAATTY	6 cut(s)	574, 1420, 1871, 2152, 2670, 2694
XceI	RCATGY	4 cut(s)	1075, 1390, 2434, 3152
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2305
XmaJI	CCTAGG	1 cut(s)	3011
XmnI	GAANNNNTTC	2 cut(s)	2276, 3307
ZrmI	AGTACT	1 cut(s)	1760
Zsp2I	ATGCAT	1 cut(s)	1207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.