Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005890

Physical Location & Seq

Genomic Coordinates Forward (+)

7575386 .. 7582975

Gene Structure 7590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG087300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3333 bp

ATGACCAGGGCTGTCCGAGATAGGATTCTCAAGGATGCAAATGGTGACATTAGTGATCATCTGCGCAACCACATTCATTTGACAAATTGCATTCACTTGAAGAACCATATGCACAAGCACAGCCCCATATTGGCCGATAGGTCACTTATGAGGGACTTGGTTGTCCTTCAGAGGTCTCGATCTCTCAGGGACCCTTCTGCGAGCCCTCCTTCATGGCAGTCTCCTTCCATTGTTGAAATGCTTTCCAAGAAAGGTGAAAATGCTCCCCTGGTGCGGGAGGGGAGAAGGTCGGTAGGAAGCGAGCATCGAAGGGAAGGTAGGAGGTTGTTGGCAAGTTCTCCACCTATAGCAAGTTTCGGAACATCAAGAGTTGCTCCAGATGAAGCTAATGGGGAGAATGATGTGTTAGCTGGAATGAGTGAACATGGAAGCAAGAGTGGAGTGAGGGATGGTAGAAGAGTTAGAAGAGAAGAATCTAGTCAGAAGAGCAATAGGATTGATATTTTGGGTGGCAATGAGGAGTCTCCACTAGATCAAAAGGGTCATGATTTAAGTCATGACACTGTTTCCCGAAATTCAGAATCAAAAAGTAGAAAAAGTAAACAAAAGGGAAAGCACATCCAAGGTGTTCAGATGAAGACTCTCTCGGAGCAATTGAATGAAGTTAGGATGGATAGTGATGATTTAGCATCGTCCAACATTCATCTACCTGGAAGACGGTCACGACAGGAAAGAATTGTTCAGGAACCGGAAGTCAGCATTCGAGGCAATTGCAGTGGACTGAGTAGGGTAAAACGGCGGAGAATTCGAGGTGGCAGAAGAAGCCGTGCTTCTGTAGCTTCCAGAGACATTGGAGCTCATAATGATTTGTCTGTGGCTTCTAATACTTTAGGTCATGGGTCAGCTCACTCAAAGTATCACATGGAGCAGGAGCAGGGAGAGGATGAGTATGAGGAGCAAAATGTCACAAGGGCTCCCGGAAATGGGTGCGGGATCCCATGGAATTGGTCAAGGATCCACGATAGAGGCAAATCATTCCTTGACATAGCTGGAAGGAGTTTTTCATGTGGTATGTCTGATTCAAGGTTTAAGAAAGGTGGTCTGGGTGCTCATGGCAGAGACATTTCTGACATGCCTATGGCCTCCGATAATTCGAGCTCTTCTACTAAATATGATGCCGAGGCATTGCCTTTACTAGTTGATGCATCCGGGTCACAGGAAAGCGCTGGTTGGGTACATGACTACTCTGGCGAACTAGGTATATATGCTGATAATCTATTCAAGCATGATGTAGGTTCTGAATTTGCTTCTGAAGCTAGATCTGGTGATCAACGCAAATTGAGAGGGCATCGCCGTGGCAGACACCAAAATCTGACGCAGAAGTACATGCCAAAAACCTTTAGAGATCTTGTGGGACAGAATTTAGTGGTGCAAGCTCTTTCCAATGCGGTCATGAAAAAGAAAGTTGGGTTGCTCTATGTATTCTATGGTCCTCATGGTACAGGAAAAACGTCCTGTGCTCGCATATTTGCTAGAGCTTTGAATTGCCAGTCTTTGGATCGTCCAAAGCCTTGCGGCTGTTGCAATTCTTGCATTGCACATGATGTGGGTAAGAGTAGAAATATAAGGGAAGTTGGCCCTGTTAGTAATATTGACTTTGAGAGCATCGTGGACCTACTTGACAATATGAGTATTTCCCAGCTGCCATCACAGTACAGAGTGTTCATCTTCGATGACTGTGATACTTTATCCCAGGAGTGCTGGAGTGCCATATCAAAGGTCATTGATCGAGCACCCAGACGTGTGGTTTTTGTCCTTGTCTGTTCAAGTCTTGATGTTTTGCCTCACATAATCATATCCAGGTGTCAGAAATTCTTTTTCCCAAAGGTAAAGGATGCAGACATTATATACACTTTGCAATGGATTGCAACCAAAGACGACTTAGAAATTGACAAGGATGCACTGAAACTTATTGCGTCAAGATCAGATGGTTCATTGAGGGATGCTGAGATGACTCTAGAGCAACTGAGTTTGCTTGGCCAGAGAATCTCTGTTCCTCTAGTTCAGGAACTAGTTGGGCTTATCTCTGACGAGAGATTGGTGGATCTGCTTGATTTAGCATTGTCTGCAGACACAGTTAATACTGTGAAGAATTTGAGAGTGATAATGGAAAGTGGTGTTGAGCCATTAGCCTTGATGTCACAACTTGCAACAGTCATTACAGATATACTTGCTGGCAGCTATGATTATACCAAAGAAGGGCGTAGAAGGAAGTTCTTTCGGCACCAACCATTATCAAAAGAAGACATGGAAAAACTGCGTCAAGCTTTGAAAACTTTATCCGAGGCTGAAAAGCAATTGAGGACATCAAATGACAAGTTAACATGGCTAACGGCTGCGCTTCTCCAACTTGCTCCTGATCAGCAGTACATGTTGCCTAGTTCTTCTGCAGGCACTAGCAATCACAGTCCTTTGGCCTTAAATAATGCTGATGGAAGGGATGTTCCTAGTTATGACAGAGGCTTGCCAACAAATGTTAAAAATGCTGGAAGTTCCAGTTTCTATGGCAATGGCTCAGTAAAAGGTAGGAGTGTAGATCGAAAAAGTCATGCTGGGGATGGTATGACTATAGCTACAAACTCTGCTGACATAGTAAAAGGGAGTGGGAGGAATAATGTTGACAGAAGCTATAAAGCAATTGAAGAAATTTGGTTGGAGGTGCTTGAGAAAATTCCATATAATCGCATAAAAGAGTTTTTGTACCAAGAAGGGAAGCTAATATCAGTCAGTTTTGGTGCAGCTCCCACTGTGCAGTTGATGTTCTCTTCACATATGACTAAATCTACAGCAGAGAAGTTTAGAGCACAGATATTACAGGCGTTTGAGATGGTTCTCGGGTCTCCCCTGACAGTTGAAATAAGATGTCTATCAAAAAAAGATACCAAGGAAGGGGCCCAGAAGCCTATTATCATACCAGCTTCTAAGGATGGTTTGTCCCAGATTAGAGATAAAAATAGTGTCATCACAGATGCCCAGCACATACACCCTGACACCCGCGAAATGGGGAAGAGTGAAATTGTTGAGGTAGCTGCTTCTCCTAGGGAAGGCAAGGGTAGTGATCAGATTGATAACCACAAAGTATCTAGCGCACGGAGGGGAGAAGCATCTATAAAACATAGAGTTGGGGAACAAAGTCAGAGTCAAAGCCTTGTCAGAGGCAAGGTGTCCCTCGCACATGTAATTCAACAGGCAGAAGGATGCTCACAGCTCAGTGGATGGTCACAACGCAAAGCAGTTTCTATTGCTGAAAAGCTTGAACAAGATAATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

1110

Amino Acids

122.86

Weight (kDa)

9.15

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol3_delta2	PF13177	473 - 630	3.7e-24	DNA polymerase III, delta subunit
AAA	PF00004	494 - 627	3.3e-06	ATPase family associated with various cellular activities (AAA)
DNA_pol3_gamma3	PF12169	686 - 810	1.4e-06	DNA polymerase III subunits gamma and tau domain III
DnaA_N-like_STI	PF23007	895 - 975	2.8e-28	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18820
fragaria_vesca	FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230
malus_domestica	MD00G1008200.v1.1 MD10G1274700.v1.1
prunus_persica	Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1
pyrus_communis	pycom05g27350 pycom10g22920
rosa_chinensis	RchiOBHm_Chr5g0011921
rosa_laevigata	RLG00000031869
rosa_multiflora	Rmu_sc0001475.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064670
rosa_rugosa	Rorug04G0460000 Rorug04G0460100
rosa_samantha	Rh5AG091500 Rh5BG087300 Rh5CG101200 Rh5DG087900
rosa_wichuraiana	Rw5G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
Acc16I	TGCGCA	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	2283
AccB7I	CCANNNNNTGG	1 cut(s)	1555
AccII	CGCG	1 cut(s)	3057
AciI	CCGC	6 cut(s)	274, 799, 990, 1448, 1575, 3055
AclWI	GGATC	6 cut(s)	988, 1001, 1009, 1022, 1566, 2112
AcoI	YGGCCR	2 cut(s)	132, 2038
AcsI	RAATTY	8 cut(s)	574, 804, 1301, 1420, 1871, 2152, 2706, 2730
AcuI	CTGAAG	2 cut(s)	152, 1332
AfaI	GTAC	6 cut(s)	1236, 1385, 1501, 1715, 2429, 2762
AfeI	AGCGCT	1 cut(s)	1225
AflIII	ACRYGT	3 cut(s)	1801, 2430, 3235
AhlI	ACTAGT	2 cut(s)	1195, 2071
AjiI	CACGTC	1 cut(s)	1802
AjnI	CCWGG	5 cut(s)	5, 267, 709, 1752, 1859
AloI	GAACNNNNNNTCC	2 cut(s)	2487, 2519
Alw21I	GWGCWC	6 cut(s)	859, 1111, 1160, 1522, 1795, 2866
Alw26I	GTCTC	6 cut(s)	180, 225, 528, 840, 1113, 2904
AlwI	GGATC	6 cut(s)	988, 1001, 1009, 1022, 1566, 2112
Ama87I	CYCGRG	1 cut(s)	2894
Aor51HI	AGCGCT	1 cut(s)	1225
AoxI	GGCC	6 cut(s)	132, 1140, 1636, 2038, 2475, 2952
ApaI	GGGCCC	1 cut(s)	2956
ApeKI	GCWGC	5 cut(s)	1702, 2238, 2396, 2798, 3089
ApoI	RAATTY	8 cut(s)	574, 804, 1301, 1420, 1871, 2152, 2706, 2730
ArsI	GACNNNNNNTTYG	2 cut(s)	3184, 3216
AspA2I	CCTAGG	1 cut(s)	3098
AspLEI	GCGC	4 cut(s)	66, 1226, 2401, 3149
AspS9I	GGNCC	6 cut(s)	190, 1490, 1637, 1672, 2952, 2953
AsuC2I	CCSGG	2 cut(s)	978, 1210
AsuHPI	GGTGA	3 cut(s)	56, 266, 1337
AvaI	CYCGRG	1 cut(s)	2894
AvaII	GGWCC	3 cut(s)	190, 1490, 1672
AvrII	CCTAGG	1 cut(s)	3098
BaeGI	GKGCMC	1 cut(s)	2956
BalI	TGGCCA	1 cut(s)	2040
BamHI	GGATCC	2 cut(s)	993, 1014
BanI	GGYRCC	1 cut(s)	2283
BanII	GRGCYC	5 cut(s)	206, 859, 976, 1160, 2956
BbsI	GAAGAC	3 cut(s)	644, 721, 2310
Bbv12I	GWGCWC	6 cut(s)	859, 1111, 1160, 1522, 1795, 2866
BbvI	GCAGC	5 cut(s)	1689, 2250, 2383, 2810, 3076
BccI	CCATC	9 cut(s)	443, 664, 1714, 1982, 2486, 2612, 2881, 2981, 3270
BceAI	ACGGC	4 cut(s)	810, 812, 1338, 2409
BcgI	CGANNNNNNTGC	2 cut(s)	753, 787
BciT130I	CCWGG	5 cut(s)	7, 269, 711, 1754, 1861
BclI	TGATCA	4 cut(s)	55, 1327, 2419, 3118
BcnI	CCSGG	2 cut(s)	978, 1210
BcoDI	GTCTC	6 cut(s)	180, 225, 528, 840, 1113, 2904
BcuI	ACTAGT	2 cut(s)	1195, 2071
BfmI	CTRYAG	6 cut(s)	345, 834, 2127, 2448, 2628, 2844
BfoI	RGCGCY	1 cut(s)	1227
BglII	AGATCT	2 cut(s)	1319, 1405
BisI	GCNGC	6 cut(s)	1576, 1703, 2239, 2397, 2799, 3090
BlnI	CCTAGG	1 cut(s)	3098
BlsI	GCNGC	6 cut(s)	1577, 1704, 2240, 2398, 2800, 3091
Bme1390I	CCNGG	7 cut(s)	7, 269, 711, 978, 1210, 1754, 1861
Bme18I	GGWCC	3 cut(s)	190, 1490, 1672
BmeT110I	CYCGRG	1 cut(s)	2894
BmgBI	CACGTC	1 cut(s)	1802
BmgT120I	GGNCC	6 cut(s)	190, 1490, 1637, 1672, 2952, 2953
BmiI	GGNNCC	9 cut(s)	191, 192, 747, 975, 995, 1016, 2285, 2953, 2954
BmrFI	CCNGG	7 cut(s)	7, 269, 711, 978, 1210, 1754, 1861
BpiI	GAAGAC	3 cut(s)	644, 721, 2310
BpmI	CTGGAG	2 cut(s)	360, 1783
BpuEI	CTTGAG	2 cut(s)	14, 2744
BpuMI	CCSGG	2 cut(s)	978, 1210
BsaBI	GATNNNNATC	1 cut(s)	2926
BsaI	GGTCTC	2 cut(s)	180, 2904
BsaWI	WCCGGW	1 cut(s)	748
BsaXI	ACNNNNNCTCC	2 cut(s)	958, 988
Bse1I	ACTGG	2 cut(s)	1549, 2556
Bse3DI	GCAATG	5 cut(s)	520, 1184, 1593, 1925, 2575
Bse8I	GATNNNNATC	1 cut(s)	2926
BseBI	CCWGG	5 cut(s)	7, 269, 711, 1754, 1861
BseJI	GATNNNNATC	1 cut(s)	2926
BseMI	GCAATG	5 cut(s)	520, 1184, 1593, 1925, 2575
BseMII	CTCAG	6 cut(s)	199, 773, 1998, 2018, 2589, 3283
BseNI	ACTGG	2 cut(s)	1549, 2556
BseRI	GAGGAG	2 cut(s)	533, 968
BseSI	GKGCMC	1 cut(s)	2956
BseXI	GCAGC	5 cut(s)	1689, 2250, 2383, 2810, 3076
BseYI	CCCAGC	3 cut(s)	1698, 2612, 3033
BsgI	GTGCAG	2 cut(s)	2817, 2831
Bsh1236I	CGCG	1 cut(s)	3057
BshFI	GGCC	6 cut(s)	134, 1142, 1638, 2040, 2477, 2954
BshNI	GGYRCC	1 cut(s)	2283
BsiHKAI	GWGCWC	6 cut(s)	859, 1111, 1160, 1522, 1795, 2866
BsiHKCI	CYCGRG	1 cut(s)	2894
BsiSI	CCGG	3 cut(s)	749, 978, 1209
BslFI	GGGAC	5 cut(s)	167, 203, 1428, 2980, 3211
BsmAI	GTCTC	6 cut(s)	180, 225, 528, 840, 1113, 2904
BsmFI	GGGAC	5 cut(s)	167, 203, 1428, 2980, 3211
BsmI	GAATGC	2 cut(s)	90, 759
BsnI	GGCC	6 cut(s)	134, 1142, 1638, 2040, 2477, 2954
Bso31I	GGTCTC	2 cut(s)	180, 2904
BsoBI	CYCGRG	1 cut(s)	2894
Bsp120I	GGGCCC	1 cut(s)	2952
Bsp1286I	GDGCHC	9 cut(s)	206, 859, 976, 1111, 1160, 1522, 1795, 2866, 2956
Bsp19I	CCATGG	1 cut(s)	998
BspACI	CCGC	6 cut(s)	274, 799, 990, 1448, 1575, 3055
BspANI	GGCC	6 cut(s)	134, 1142, 1638, 2040, 2477, 2954
BspCNI	CTCAG	6 cut(s)	198, 774, 1999, 2019, 2588, 3282
BspFNI	CGCG	1 cut(s)	3057
BspHI	TCATGA	3 cut(s)	544, 556, 1452
BspLI	GGNNCC	9 cut(s)	191, 192, 747, 975, 995, 1016, 2285, 2953, 2954
BspMAI	CTGCAG	2 cut(s)	2131, 2452
BspPI	GGATC	6 cut(s)	988, 1001, 1009, 1022, 1566, 2112
BspQI	GCTCTTC	2 cut(s)	479, 1165
BspT107I	GGYRCC	1 cut(s)	2283
BspTNI	GGTCTC	2 cut(s)	180, 2904
BsrDI	GCAATG	5 cut(s)	520, 1184, 1593, 1925, 2575
BsrI	ACTGG	2 cut(s)	1549, 2556
BssT1I	CCWWGG	4 cut(s)	622, 998, 2943, 3098
Bst2UI	CCWGG	5 cut(s)	7, 269, 711, 1754, 1861
Bst6I	CTCTTC	6 cut(s)	451, 460, 479, 1165, 2830, 3062
BstAPI	GCANNNNNTGC	2 cut(s)	1590, 2126
BstC8I	GCNNGC	7 cut(s)	202, 302, 1434, 1522, 2236, 2452, 2525
BstDEI	CTNAG	8 cut(s)	185, 782, 1942, 2007, 2027, 2575, 2982, 3269
BstDSI	CCRYGG	2 cut(s)	998, 1354
BstENI	CCTNNNNNAGG	1 cut(s)	3102
BstFNI	CGCG	1 cut(s)	3057
BstH2I	RGCGCY	1 cut(s)	1227
BstHHI	GCGC	4 cut(s)	66, 1226, 2401, 3149
BstMAI	GTCTC	6 cut(s)	180, 225, 528, 840, 1113, 2904
BstMWI	GCNNNNNNNGC	7 cut(s)	765, 822, 836, 1313, 1581, 1590, 2126
BstNI	CCWGG	5 cut(s)	7, 269, 711, 1754, 1861
BstNSI	RCATGY	4 cut(s)	1135, 1390, 2434, 3239
BstSCI	CCNGG	7 cut(s)	5, 267, 709, 976, 1208, 1752, 1859
BstSFI	CTRYAG	6 cut(s)	345, 834, 2127, 2448, 2628, 2844
BstSLI	GKGCMC	1 cut(s)	2956
BstUI	CGCG	1 cut(s)	3057
BstV1I	GCAGC	5 cut(s)	1689, 2250, 2383, 2810, 3076
BstV2I	GAAGAC	3 cut(s)	644, 721, 2310
BstX2I	RGATCY	5 cut(s)	993, 1014, 1319, 1405, 2104
BstXI	CCANNNNNNTGG	2 cut(s)	1005, 1804
BstYI	RGATCY	5 cut(s)	993, 1014, 1319, 1405, 2104
BsuRI	GGCC	6 cut(s)	134, 1142, 1638, 2040, 2477, 2954
BtgI	CCRYGG	2 cut(s)	998, 1354
BtgZI	GCGATG	1 cut(s)	1334
BtrI	CACGTC	1 cut(s)	1802
BtsI	GCAGTG	1 cut(s)	781
BtsIMutI	CAGTG	5 cut(s)	561, 781, 1961, 2805, 3277
Cac8I	GCNNGC	7 cut(s)	202, 302, 1434, 1522, 2236, 2452, 2525
CciI	TCATGA	3 cut(s)	544, 556, 1452
CfoI	GCGC	4 cut(s)	66, 1226, 2401, 3149
Cfr13I	GGNCC	6 cut(s)	190, 1490, 1637, 1672, 2952, 2953
CseI	GACGC	3 cut(s)	1384, 1965, 2309
Csp6I	GTAC	6 cut(s)	1235, 1384, 1500, 1714, 2428, 2761
CspCI	CAANNNNNGTGG	2 cut(s)	757, 792
CviQI	GTAC	6 cut(s)	1235, 1384, 1500, 1714, 2428, 2761
DdeI	CTNAG	8 cut(s)	185, 782, 1942, 2007, 2027, 2575, 2982, 3269
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	2 cut(s)	132, 2038
Eam1104I	CTCTTC	6 cut(s)	451, 460, 479, 1165, 2830, 3062
EarI	CTCTTC	6 cut(s)	451, 460, 479, 1165, 2830, 3062
EciI	GGCGGA	1 cut(s)	814
Ecl136II	GAGCTC	2 cut(s)	857, 1158
Eco130I	CCWWGG	4 cut(s)	622, 998, 2943, 3098
Eco24I	GRGCYC	5 cut(s)	206, 859, 976, 1160, 2956
Eco31I	GGTCTC	2 cut(s)	180, 2904
Eco47I	GGWCC	3 cut(s)	190, 1490, 1672
Eco47III	AGCGCT	1 cut(s)	1225
Eco53kI	GAGCTC	2 cut(s)	857, 1158
Eco57I	CTGAAG	2 cut(s)	152, 1332
Eco88I	CYCGRG	1 cut(s)	2894
EcoICRI	GAGCTC	2 cut(s)	857, 1158
EcoNI	CCTNNNNNAGG	1 cut(s)	3102
EcoO109I	RGGNCCY	2 cut(s)	190, 2952
EcoRI	GAATTC	1 cut(s)	804
EcoRII	CCWGG	5 cut(s)	5, 267, 709, 1752, 1859
EcoT14I	CCWWGG	4 cut(s)	622, 998, 2943, 3098
EcoT22I	ATGCAT	1 cut(s)	1207
EcoT38I	GRGCYC	5 cut(s)	206, 859, 976, 1160, 2956
ErhI	CCWWGG	4 cut(s)	622, 998, 2943, 3098
FalI	AAGNNNNNCTT	2 cut(s)	814, 846
FaqI	GGGAC	5 cut(s)	167, 203, 1428, 2980, 3211
FauI	CCCGC	3 cut(s)	267, 983, 3062
FauNDI	CATATG	2 cut(s)	108, 2832
FbaI	TGATCA	4 cut(s)	55, 1327, 2419, 3118
Fnu4HI	GCNGC	6 cut(s)	1576, 1703, 2239, 2397, 2799, 3090
FriOI	GRGCYC	5 cut(s)	206, 859, 976, 1160, 2956
Fsp4HI	GCNGC	6 cut(s)	1576, 1703, 2239, 2397, 2799, 3090
FspI	TGCGCA	1 cut(s)	65
GlaI	GCGC	4 cut(s)	65, 1225, 2400, 3148
GluI	GCNGC	6 cut(s)	1576, 1703, 2239, 2397, 2799, 3090
GsaI	CCCAGC	3 cut(s)	1702, 2616, 3037
GsuI	CTGGAG	2 cut(s)	360, 1783
HaeII	RGCGCY	1 cut(s)	1227
HaeIII	GGCC	6 cut(s)	134, 1142, 1638, 2040, 2477, 2954
HapII	CCGG	3 cut(s)	749, 978, 1209
HgaI	GACGC	3 cut(s)	1384, 1965, 2309
HhaI	GCGC	4 cut(s)	66, 1226, 2401, 3149
Hin6I	GCGC	4 cut(s)	64, 1224, 2399, 3147
HinP1I	GCGC	4 cut(s)	64, 1224, 2399, 3147
HincII	GTYRAC	2 cut(s)	2382, 2680
HindII	GTYRAC	2 cut(s)	2382, 2680
HindIII	AAGCTT	2 cut(s)	2325, 3311
HinfI	GANTC	9 cut(s)	25, 473, 521, 581, 640, 1079, 2014, 2046, 3199
HpaI	GTTAAC	1 cut(s)	2382
HpaII	CCGG	3 cut(s)	749, 978, 1209
HphI	GGTGA	3 cut(s)	56, 266, 1337
Hpy166II	GTNNAC	6 cut(s)	422, 602, 779, 1672, 2382, 2680
Hpy8I	GTNNAC	6 cut(s)	422, 602, 779, 1672, 2382, 2680
HpyCH4IV	ACGT	2 cut(s)	1511, 1801
HpyF10VI	GCNNNNNNNGC	7 cut(s)	765, 822, 836, 1313, 1581, 1590, 2126
HpyF3I	CTNAG	8 cut(s)	185, 782, 1942, 2007, 2027, 2575, 2982, 3269
HpySE526I	ACGT	2 cut(s)	1511, 1801
HspAI	GCGC	4 cut(s)	64, 1224, 2399, 3147
KflI	GGGWCCC	1 cut(s)	190
Ksp22I	TGATCA	4 cut(s)	55, 1327, 2419, 3118
KspAI	GTTAAC	1 cut(s)	2382
LguI	GCTCTTC	2 cut(s)	479, 1165
Lsp1109I	GCAGC	5 cut(s)	1689, 2250, 2383, 2810, 3076
MaeII	ACGT	2 cut(s)	1511, 1801
MaeIII	GTNAC	7 cut(s)	44, 141, 720, 964, 1212, 2199, 3279
MfeI	CAATTG	4 cut(s)	653, 769, 2357, 2697
MflI	RGATCY	5 cut(s)	993, 1014, 1319, 1405, 2104
MhlI	GDGCHC	9 cut(s)	206, 859, 976, 1111, 1160, 1522, 1795, 2866, 2956
MlsI	TGGCCA	1 cut(s)	2040
MluNI	TGGCCA	1 cut(s)	2040
MlyI	GAGTC	4 cut(s)	530, 634, 2008, 3208
MmeI	TCCRAC	3 cut(s)	720, 2431, 2694
Mox20I	TGGCCA	1 cut(s)	2040
Mph1103I	ATGCAT	1 cut(s)	1207
MscI	TGGCCA	1 cut(s)	2040
MseI	TTAA	6 cut(s)	551, 1089, 2139, 2381, 2480, 2538
MslI	CAYNNNNRTG	2 cut(s)	1136, 1353
Msp20I	TGGCCA	1 cut(s)	2040
MspA1I	CMGCKG	1 cut(s)	1702
MspI	CCGG	3 cut(s)	749, 978, 1209
MspR9I	CCNGG	7 cut(s)	7, 269, 711, 978, 1210, 1754, 1861
MunI	CAATTG	4 cut(s)	653, 769, 2357, 2697
Mva1269I	GAATGC	2 cut(s)	90, 759
MvaI	CCWGG	5 cut(s)	7, 269, 711, 1754, 1861
MvnI	CGCG	1 cut(s)	3057
MwoI	GCNNNNNNNGC	7 cut(s)	765, 822, 836, 1313, 1581, 1590, 2126
NciI	CCSGG	2 cut(s)	978, 1210
NcoI	CCATGG	1 cut(s)	998
NdeI	CATATG	2 cut(s)	108, 2832
NlaIV	GGNNCC	9 cut(s)	191, 192, 747, 975, 995, 1016, 2285, 2953, 2954
NmeAIII	GCCGAG	1 cut(s)	1204
NmuCI	GTSAC	7 cut(s)	44, 141, 720, 964, 1212, 2199, 3279
NsbI	TGCGCA	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	1207
NspI	RCATGY	4 cut(s)	1135, 1390, 2434, 3239
PagI	TCATGA	3 cut(s)	544, 556, 1452
PciI	ACATGT	2 cut(s)	2430, 3235
PciSI	GCTCTTC	2 cut(s)	479, 1165
PctI	GAATGC	2 cut(s)	90, 759
PfeI	GAWTC	5 cut(s)	25, 473, 581, 1079, 2046
PflMI	CCANNNNNTGG	1 cut(s)	1555
PfoI	TCCNGGA	1 cut(s)	976
PkrI	GCNGC	6 cut(s)	1577, 1704, 2240, 2398, 2800, 3091
PleI	GAGTC	4 cut(s)	529, 634, 2008, 3207
PpsI	GAGTC	4 cut(s)	529, 634, 2008, 3207
PpuMI	RGGWCCY	1 cut(s)	190
PscI	ACATGT	2 cut(s)	2430, 3235
Psp124BI	GAGCTC	2 cut(s)	859, 1160
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	5 cut(s)	5, 267, 709, 1752, 1859
PspFI	CCCAGC	3 cut(s)	1698, 2612, 3033
PspGI	CCWGG	5 cut(s)	5, 267, 709, 1752, 1859
PspN4I	GGNNCC	9 cut(s)	191, 192, 747, 975, 995, 1016, 2285, 2953, 2954
PspOMI	GGGCCC	1 cut(s)	2952
PspPI	GGNCC	6 cut(s)	190, 1490, 1637, 1672, 2952, 2953
PspPPI	RGGWCCY	1 cut(s)	190
PsrI	GAACNNNNNNTAC	2 cut(s)	1706, 1738
PstI	CTGCAG	2 cut(s)	2131, 2452
PsuI	RGATCY	5 cut(s)	993, 1014, 1319, 1405, 2104
PvuII	CAGCTG	1 cut(s)	1702
RsaI	GTAC	6 cut(s)	1236, 1385, 1501, 1715, 2429, 2762
RsaNI	GTAC	6 cut(s)	1235, 1384, 1500, 1714, 2428, 2761
RseI	CAYNNNNRTG	2 cut(s)	1136, 1353
SacI	GAGCTC	2 cut(s)	859, 1160
SapI	GCTCTTC	2 cut(s)	479, 1165
SaqAI	TTAA	6 cut(s)	551, 1089, 2139, 2381, 2480, 2538
SatI	GCNGC	6 cut(s)	1576, 1703, 2239, 2397, 2799, 3090
Sau96I	GGNCC	6 cut(s)	190, 1490, 1637, 1672, 2952, 2953
SchI	GAGTC	4 cut(s)	530, 634, 2008, 3208
ScrFI	CCNGG	7 cut(s)	7, 269, 711, 978, 1210, 1754, 1861
SduI	GDGCHC	9 cut(s)	206, 859, 976, 1111, 1160, 1522, 1795, 2866, 2956
SfcI	CTRYAG	6 cut(s)	345, 834, 2127, 2448, 2628, 2844
SinI	GGWCC	3 cut(s)	190, 1490, 1672
SmiMI	CAYNNNNRTG	2 cut(s)	1136, 1353
SmlI	CTYRAG	2 cut(s)	29, 2723
SmoI	CTYRAG	2 cut(s)	29, 2723
SpeI	ACTAGT	2 cut(s)	1195, 2071
SsiI	CCGC	6 cut(s)	274, 799, 990, 1448, 1575, 3055
SspI	AATATT	1 cut(s)	1651
SstI	GAGCTC	2 cut(s)	859, 1160
StyD4I	CCNGG	7 cut(s)	5, 267, 709, 976, 1208, 1752, 1859
StyI	CCWWGG	4 cut(s)	622, 998, 2943, 3098
TaiI	ACGT	2 cut(s)	1514, 1804
TaqI	TCGA	8 cut(s)	178, 307, 763, 808, 1154, 1731, 1789, 2599
TatI	WGTACW	3 cut(s)	1383, 1713, 2427
TauI	GCSGC	1 cut(s)	1578
TfiI	GAWTC	5 cut(s)	25, 473, 581, 1079, 2046
Tru1I	TTAA	6 cut(s)	551, 1089, 2139, 2381, 2480, 2538
Tru9I	TTAA	6 cut(s)	551, 1089, 2139, 2381, 2480, 2538
TscAI	CASTG	5 cut(s)	568, 781, 1968, 2812, 3277
TseFI	GTSAC	7 cut(s)	44, 141, 720, 964, 1212, 2199, 3279
TseI	GCWGC	5 cut(s)	1702, 2238, 2396, 2798, 3089
Tsp45I	GTSAC	7 cut(s)	44, 141, 720, 964, 1212, 2199, 3279
TspGWI	ACGGA	1 cut(s)	3166
TspRI	CASTG	5 cut(s)	568, 781, 1968, 2812, 3277
Van91I	CCANNNNNTGG	1 cut(s)	1555
VpaK11BI	GGWCC	3 cut(s)	190, 1490, 1672
XagI	CCTNNNNNAGG	1 cut(s)	3102
XapI	RAATTY	8 cut(s)	574, 804, 1301, 1420, 1871, 2152, 2706, 2730
XbaI	TCTAGA	1 cut(s)	2017
XceI	RCATGY	4 cut(s)	1135, 1390, 2434, 3239
XmaJI	CCTAGG	1 cut(s)	3098
Zsp2I	ATGCAT	1 cut(s)	1207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.