STICHEL-like 3
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G18820 |
| fragaria_vesca | FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 |
| malus_domestica | MD00G1008200.v1.1 MD10G1274700.v1.1 |
| prunus_persica | Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1 |
| pyrus_communis | pycom05g27350 pycom10g22920 |
| rosa_chinensis | RchiOBHm_Chr5g0011921 |
| rosa_laevigata | RLG00000031869 |
| rosa_multiflora | Rmu_sc0001475.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00064670 |
| rosa_rugosa | Rorug04G0460000 Rorug04G0460100 |
| rosa_samantha | Rh5AG091500 Rh5BG087300 Rh5CG101200 Rh5DG087900 |
| rosa_wichuraiana | Rw5G007980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2247 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 161 |
| Acc16I | TGCGCA | 1 cut(s) | 65 |
| Acc65I | GGTACC | 1 cut(s) | 3086 |
| AccB1I | GGYRCC | 5 cut(s) | 967, 1359, 2990, 3086, 3200 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1552, 3097 |
| AccII | CGCG | 2 cut(s) | 18, 3084 |
| AciI | CCGC | 3 cut(s) | 1348, 1996, 3084 |
| AclWI | GGATC | 3 cut(s) | 19, 32, 1563 |
| AcoI | YGGCCR | 1 cut(s) | 2035 |
| AcsI | RAATTY | 8 cut(s) | 574, 803, 1417, 2149, 2620, 2745, 2792, 3269 |
| AcuI | CTGAAG | 3 cut(s) | 1188, 1329, 3542 |
| AcvI | CACGTG | 1 cut(s) | 380 |
| AcyI | GRCGYC | 1 cut(s) | 968 |
| AdeI | CACNNNGTG | 1 cut(s) | 1603 |
| AfaI | GTAC | 4 cut(s) | 617, 1498, 1712, 3088 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 977, 978, 1552, 2666, 3097 |
| AflIII | ACRYGT | 2 cut(s) | 1798, 3325 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 688 |
| AhlI | ACTAGT | 1 cut(s) | 1183 |
| AjnI | CCWGG | 2 cut(s) | 5, 1856 |
| Alw21I | GWGCWC | 4 cut(s) | 631, 1519, 1537, 1792 |
| Alw26I | GTCTC | 6 cut(s) | 180, 840, 1789, 2943, 3409, 3551 |
| AlwI | GGATC | 3 cut(s) | 19, 32, 1563 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2068 |
| AoxI | GGCC | 5 cut(s) | 1342, 1634, 2035, 2475, 3057 |
| ApeKI | GCWGC | 6 cut(s) | 1100, 1699, 2235, 2393, 2837, 3125 |
| ApoI | RAATTY | 8 cut(s) | 574, 803, 1417, 2149, 2620, 2745, 2792, 3269 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3274, 3306 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1117, 3478 |
| Asp718I | GGTACC | 1 cut(s) | 3086 |
| AspA2I | CCTAGG | 1 cut(s) | 3134 |
| AspLEI | GCGC | 5 cut(s) | 66, 801, 970, 1429, 3084 |
| AspS9I | GGNCC | 7 cut(s) | 154, 190, 1342, 1487, 1634, 1669, 3057 |
| AsuHPI | GGTGA | 8 cut(s) | 56, 213, 266, 899, 1259, 1334, 1550, 3231 |
| AvaII | GGWCC | 4 cut(s) | 154, 190, 1487, 1669 |
| AvrII | CCTAGG | 1 cut(s) | 3134 |
| BaeGI | GKGCMC | 2 cut(s) | 2995, 3205 |
| BalI | TGGCCA | 1 cut(s) | 2037 |
| BamHI | GGATCC | 1 cut(s) | 24 |
| BanI | GGYRCC | 5 cut(s) | 967, 1359, 2990, 3086, 3200 |
| BanII | GRGCYC | 1 cut(s) | 1537 |
| BauI | CACGAG | 1 cut(s) | 1406 |
| BbrPI | CACGTG | 1 cut(s) | 380 |
| BbsI | GAAGAC | 2 cut(s) | 644, 2307 |
| Bbv12I | GWGCWC | 4 cut(s) | 631, 1519, 1537, 1792 |
| BbvI | GCAGC | 6 cut(s) | 1087, 1686, 2247, 2380, 2849, 3112 |
| BceAI | ACGGC | 2 cut(s) | 810, 1335 |
| BciT130I | CCWGG | 2 cut(s) | 7, 1858 |
| BciVI | GTATCC | 1 cut(s) | 1224 |
| BclI | TGATCA | 3 cut(s) | 55, 1324, 2416 |
| BcoDI | GTCTC | 6 cut(s) | 180, 840, 1789, 2943, 3409, 3551 |
| BcuI | ACTAGT | 1 cut(s) | 1183 |
| BfmI | CTRYAG | 3 cut(s) | 834, 1906, 2883 |
| BfoI | RGCGCY | 1 cut(s) | 971 |
| BfuI | GTATCC | 1 cut(s) | 1224 |
| BglII | AGATCT | 4 cut(s) | 1316, 1402, 1936, 2101 |
| BisI | GCNGC | 6 cut(s) | 1101, 1700, 2236, 2394, 2838, 3126 |
| BlnI | CCTAGG | 1 cut(s) | 3134 |
| BlsI | GCNGC | 6 cut(s) | 1102, 1701, 2237, 2395, 2839, 3127 |
| Bme1390I | CCNGG | 2 cut(s) | 7, 1858 |
| Bme18I | GGWCC | 4 cut(s) | 154, 190, 1487, 1669 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 688 |
| BmgT120I | GGNCC | 7 cut(s) | 154, 190, 1342, 1487, 1634, 1669, 3057 |
| BmrFI | CCNGG | 2 cut(s) | 7, 1858 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2822 |
| BpiI | GAAGAC | 2 cut(s) | 644, 2307 |
| BpmI | CTGGAG | 3 cut(s) | 1780, 2387, 3062 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1881 |
| BpuEI | CTTGAG | 5 cut(s) | 14, 879, 1132, 1547, 2783 |
| BsaAI | YACGTR | 1 cut(s) | 380 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2965 |
| BsaHI | GRCGYC | 1 cut(s) | 968 |
| BsaI | GGTCTC | 2 cut(s) | 180, 2943 |
| BsaJI | CCNNGG | 6 cut(s) | 6, 992, 1131, 2472, 2593, 3134 |
| BsaWI | WCCGGW | 1 cut(s) | 748 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 977, 978, 1552, 2666, 3097 |
| Bse1I | ACTGG | 6 cut(s) | 201, 1546, 2073, 2176, 3014, 3423 |
| Bse3DI | GCAATG | 6 cut(s) | 520, 1038, 1922, 1991, 2605, 3515 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2965 |
| BseBI | CCWGG | 2 cut(s) | 7, 1858 |
| BseDI | CCNNGG | 6 cut(s) | 6, 992, 1131, 2472, 2593, 3134 |
| BseJI | GATNNNNATC | 1 cut(s) | 2965 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 977, 978, 1552, 2666, 3097 |
| BseMI | GCAATG | 6 cut(s) | 520, 1038, 1922, 1991, 2605, 3515 |
| BseMII | CTCAG | 5 cut(s) | 199, 660, 1995, 2331, 2835 |
| BseNI | ACTGG | 6 cut(s) | 201, 1546, 2073, 2176, 3014, 3423 |
| BseRI | GAGGAG | 2 cut(s) | 533, 2649 |
| BseSI | GKGCMC | 2 cut(s) | 2995, 3205 |
| BseXI | GCAGC | 6 cut(s) | 1087, 1686, 2247, 2380, 2849, 3112 |
| BseYI | CCCAGC | 3 cut(s) | 1695, 2642, 3072 |
| BsgI | GTGCAG | 3 cut(s) | 2379, 2856, 2870 |
| Bsh1236I | CGCG | 2 cut(s) | 18, 3084 |
| BshFI | GGCC | 5 cut(s) | 1344, 1636, 2037, 2477, 3059 |
| BshNI | GGYRCC | 5 cut(s) | 967, 1359, 2990, 3086, 3200 |
| BsiHKAI | GWGCWC | 4 cut(s) | 631, 1519, 1537, 1792 |
| BsiSI | CCGG | 2 cut(s) | 411, 749 |
| BslFI | GGGAC | 7 cut(s) | 167, 203, 1425, 1678, 1732, 2454, 3301 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 977, 978, 1552, 2666, 3097 |
| BsmAI | GTCTC | 6 cut(s) | 180, 840, 1789, 2943, 3409, 3551 |
| BsmFI | GGGAC | 7 cut(s) | 167, 203, 1425, 1678, 1732, 2454, 3301 |
| BsmI | GAATGC | 4 cut(s) | 90, 217, 759, 3337 |
| BsnI | GGCC | 5 cut(s) | 1344, 1636, 2037, 2477, 3059 |
| Bso31I | GGTCTC | 2 cut(s) | 180, 2943 |
| Bsp1286I | GDGCHC | 6 cut(s) | 631, 1519, 1537, 1792, 2995, 3205 |
| Bsp19I | CCATGG | 2 cut(s) | 992, 2593 |
| Bsp68I | TCGCGA | 1 cut(s) | 18 |
| BspACI | CCGC | 3 cut(s) | 1348, 1996, 3084 |
| BspANI | GGCC | 5 cut(s) | 1344, 1636, 2037, 2477, 3059 |
| BspCNI | CTCAG | 5 cut(s) | 198, 659, 1996, 2332, 2834 |
| BspFNI | CGCG | 2 cut(s) | 18, 3084 |
| BspHI | TCATGA | 2 cut(s) | 556, 1449 |
| BspPI | GGATC | 3 cut(s) | 19, 32, 1563 |
| BspT107I | GGYRCC | 5 cut(s) | 967, 1359, 2990, 3086, 3200 |
| BspTNI | GGTCTC | 2 cut(s) | 180, 2943 |
| BsrDI | GCAATG | 6 cut(s) | 520, 1038, 1922, 1991, 2605, 3515 |
| BsrI | ACTGG | 6 cut(s) | 201, 1546, 2073, 2176, 3014, 3423 |
| BssECI | CCNNGG | 6 cut(s) | 6, 992, 1131, 2472, 2593, 3134 |
| BssNI | GRCGYC | 1 cut(s) | 968 |
| BssSI | CACGAG | 1 cut(s) | 1406 |
| BssT1I | CCWWGG | 4 cut(s) | 992, 2472, 2593, 3134 |
| Bst2BI | CACGAG | 1 cut(s) | 1406 |
| Bst2UI | CCWGG | 2 cut(s) | 7, 1858 |
| Bst6I | CTCTTC | 5 cut(s) | 479, 1604, 2869, 3009, 3098 |
| BstACI | GRCGYC | 1 cut(s) | 968 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1587 |
| BstBAI | YACGTR | 1 cut(s) | 380 |
| BstC8I | GCNNGC | 7 cut(s) | 711, 950, 1431, 2233, 2409, 2449, 3061 |
| BstDEI | CTNAG | 7 cut(s) | 185, 646, 782, 1881, 2004, 2340, 2821 |
| BstDSI | CCRYGG | 3 cut(s) | 992, 1131, 2593 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2664 |
| BstFNI | CGCG | 2 cut(s) | 18, 3084 |
| BstH2I | RGCGCY | 1 cut(s) | 971 |
| BstHHI | GCGC | 5 cut(s) | 66, 801, 970, 1429, 3084 |
| BstMAI | GTCTC | 6 cut(s) | 180, 840, 1789, 2943, 3409, 3551 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 356, 836, 1106, 1310, 1587, 2123, 2654, 3444 |
| BstNI | CCWGG | 2 cut(s) | 7, 1858 |
| BstNSI | RCATGY | 5 cut(s) | 1129, 1387, 1802, 3329, 3515 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2822 |
| BstSCI | CCNGG | 2 cut(s) | 5, 1856 |
| BstSFI | CTRYAG | 3 cut(s) | 834, 1906, 2883 |
| BstSLI | GKGCMC | 2 cut(s) | 2995, 3205 |
| BstUI | CGCG | 2 cut(s) | 18, 3084 |
| BstV1I | GCAGC | 6 cut(s) | 1087, 1686, 2247, 2380, 2849, 3112 |
| BstV2I | GAAGAC | 2 cut(s) | 644, 2307 |
| BstX2I | RGATCY | 5 cut(s) | 24, 1316, 1402, 1936, 2101 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 999, 2600 |
| BstYI | RGATCY | 5 cut(s) | 24, 1316, 1402, 1936, 2101 |
| BsuI | GTATCC | 1 cut(s) | 1224 |
| BsuRI | GGCC | 5 cut(s) | 1344, 1636, 2037, 2477, 3059 |
| BtgI | CCRYGG | 3 cut(s) | 992, 1131, 2593 |
| BtsI | GCAGTG | 2 cut(s) | 781, 1172 |
| BtsIMutI | CAGTG | 6 cut(s) | 424, 781, 1172, 1958, 2217, 2844 |
| BtuMI | TCGCGA | 1 cut(s) | 18 |
| Cac8I | GCNNGC | 7 cut(s) | 711, 950, 1431, 2233, 2409, 2449, 3061 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2068 |
| CciI | TCATGA | 2 cut(s) | 556, 1449 |
| CfoI | GCGC | 5 cut(s) | 66, 801, 970, 1429, 3084 |
| Cfr13I | GGNCC | 7 cut(s) | 154, 190, 1342, 1487, 1634, 1669, 3057 |
| CseI | GACGC | 3 cut(s) | 44, 1381, 2306 |
| Csp6I | GTAC | 4 cut(s) | 616, 1497, 1711, 3087 |
| CspCI | CAANNNNNGTGG | 8 cut(s) | 1552, 1587, 2172, 2207, 3133, 3168, 3498, 3533 |
| CviQI | GTAC | 4 cut(s) | 616, 1497, 1711, 3087 |
| DdeI | CTNAG | 7 cut(s) | 185, 646, 782, 1881, 2004, 2340, 2821 |
| DinI | GGCGCC | 1 cut(s) | 969 |
| DraIII | CACNNNGTG | 1 cut(s) | 1603 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 161 |
| DriI | GACNNNNNGTC | 1 cut(s) | 688 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 161 |
| EaeI | YGGCCR | 1 cut(s) | 2035 |
| Eam1104I | CTCTTC | 5 cut(s) | 479, 1604, 2869, 3009, 3098 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 688 |
| EarI | CTCTTC | 5 cut(s) | 479, 1604, 2869, 3009, 3098 |
| Ecl136II | GAGCTC | 1 cut(s) | 1535 |
| Eco130I | CCWWGG | 4 cut(s) | 992, 2472, 2593, 3134 |
| Eco24I | GRGCYC | 1 cut(s) | 1537 |
| Eco31I | GGTCTC | 2 cut(s) | 180, 2943 |
| Eco47I | GGWCC | 4 cut(s) | 154, 190, 1487, 1669 |
| Eco53kI | GAGCTC | 1 cut(s) | 1535 |
| Eco57I | CTGAAG | 3 cut(s) | 1188, 1329, 3542 |
| Eco72I | CACGTG | 1 cut(s) | 380 |
| EcoICRI | GAGCTC | 1 cut(s) | 1535 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2664 |
| EcoO109I | RGGNCCY | 2 cut(s) | 154, 190 |
| EcoRI | GAATTC | 1 cut(s) | 574 |
| EcoRII | CCWGG | 2 cut(s) | 5, 1856 |
| EcoT14I | CCWWGG | 4 cut(s) | 992, 2472, 2593, 3134 |
| EcoT22I | ATGCAT | 2 cut(s) | 268, 3517 |
| EcoT38I | GRGCYC | 1 cut(s) | 1537 |
| EgeI | GGCGCC | 1 cut(s) | 969 |
| EheI | GGCGCC | 1 cut(s) | 969 |
| ErhI | CCWWGG | 4 cut(s) | 992, 2472, 2593, 3134 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 814, 846, 3207, 3239 |
| FaqI | GGGAC | 7 cut(s) | 167, 203, 1425, 1678, 1732, 2454, 3301 |
| FauI | CCCGC | 1 cut(s) | 1989 |
| FauNDI | CATATG | 2 cut(s) | 108, 2871 |
| FbaI | TGATCA | 3 cut(s) | 55, 1324, 2416 |
| Fnu4HI | GCNGC | 6 cut(s) | 1101, 1700, 2236, 2394, 2838, 3126 |
| FriOI | GRGCYC | 1 cut(s) | 1537 |
| Fsp4HI | GCNGC | 6 cut(s) | 1101, 1700, 2236, 2394, 2838, 3126 |
| FspI | TGCGCA | 1 cut(s) | 65 |
| GlaI | GCGC | 5 cut(s) | 65, 800, 969, 1428, 3083 |
| GluI | GCNGC | 6 cut(s) | 1101, 1700, 2236, 2394, 2838, 3126 |
| GsaI | CCCAGC | 3 cut(s) | 1699, 2646, 3076 |
| GsuI | CTGGAG | 3 cut(s) | 1780, 2387, 3062 |
| HaeII | RGCGCY | 1 cut(s) | 971 |
| HaeIII | GGCC | 5 cut(s) | 1344, 1636, 2037, 2477, 3059 |
| HapII | CCGG | 2 cut(s) | 411, 749 |
| HgaI | GACGC | 3 cut(s) | 44, 1381, 2306 |
| HhaI | GCGC | 5 cut(s) | 66, 801, 970, 1429, 3084 |
| Hin1I | GRCGYC | 1 cut(s) | 968 |
| Hin6I | GCGC | 5 cut(s) | 64, 799, 968, 1427, 3082 |
| HinP1I | GCGC | 5 cut(s) | 64, 799, 968, 1427, 3082 |
| HincII | GTYRAC | 2 cut(s) | 2379, 2559 |
| HindII | GTYRAC | 2 cut(s) | 2379, 2559 |
| HindIII | AAGCTT | 5 cut(s) | 2322, 2455, 3436, 3476, 3524 |
| HpaI | GTTAAC | 1 cut(s) | 2379 |
| HpaII | CCGG | 2 cut(s) | 411, 749 |
| HphI | GGTGA | 8 cut(s) | 56, 213, 266, 899, 1259, 1334, 1550, 3231 |
| Hpy166II | GTNNAC | 6 cut(s) | 422, 779, 1250, 2379, 2522, 2559 |
| Hpy8I | GTNNAC | 6 cut(s) | 422, 779, 1250, 2379, 2522, 2559 |
| Hpy99I | CGWCG | 3 cut(s) | 1356, 2446, 3474 |
| HpyCH4IV | ACGT | 6 cut(s) | 379, 684, 689, 718, 2635, 3352 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 356, 836, 1106, 1310, 1587, 2123, 2654, 3444 |
| HpyF3I | CTNAG | 7 cut(s) | 185, 646, 782, 1881, 2004, 2340, 2821 |
| HpySE526I | ACGT | 6 cut(s) | 379, 684, 689, 718, 2635, 3352 |
| Hsp92I | GRCGYC | 1 cut(s) | 968 |
| HspAI | GCGC | 5 cut(s) | 64, 799, 968, 1427, 3082 |
| KasI | GGCGCC | 1 cut(s) | 967 |
| KflI | GGGWCCC | 1 cut(s) | 190 |
| KpnI | GGTACC | 1 cut(s) | 3090 |
| Ksp22I | TGATCA | 3 cut(s) | 55, 1324, 2416 |
| KspAI | GTTAAC | 1 cut(s) | 2379 |
| LmnI | GCTCC | 8 cut(s) | 379, 520, 1050, 1217, 2416, 2662, 3081, 3306 |
| Lsp1109I | GCAGC | 6 cut(s) | 1087, 1686, 2247, 2380, 2849, 3112 |
| MaeII | ACGT | 6 cut(s) | 379, 684, 689, 718, 2635, 3352 |
| MfeI | CAATTG | 2 cut(s) | 653, 2354 |
| MflI | RGATCY | 5 cut(s) | 24, 1316, 1402, 1936, 2101 |
| MhlI | GDGCHC | 6 cut(s) | 631, 1519, 1537, 1792, 2995, 3205 |
| MlsI | TGGCCA | 1 cut(s) | 2037 |
| MluNI | TGGCCA | 1 cut(s) | 2037 |
| Mly113I | GGCGCC | 1 cut(s) | 968 |
| MlyI | GAGTC | 5 cut(s) | 547, 634, 2005, 3298, 3353 |
| MmeI | TCCRAC | 2 cut(s) | 1208, 2733 |
| Mox20I | TGGCCA | 1 cut(s) | 2037 |
| Mph1103I | ATGCAT | 2 cut(s) | 268, 3517 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1117, 3478 |
| MscI | TGGCCA | 1 cut(s) | 2037 |
| MseI | TTAA | 7 cut(s) | 1083, 2024, 2136, 2378, 2460, 2480, 3440 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1130, 2598 |
| Msp20I | TGGCCA | 1 cut(s) | 2037 |
| MspA1I | CMGCKG | 2 cut(s) | 1699, 2393 |
| MspI | CCGG | 2 cut(s) | 411, 749 |
| MspR9I | CCNGG | 2 cut(s) | 7, 1858 |
| MunI | CAATTG | 2 cut(s) | 653, 2354 |
| Mva1269I | GAATGC | 4 cut(s) | 90, 217, 759, 3337 |
| MvaI | CCWGG | 2 cut(s) | 7, 1858 |
| MvnI | CGCG | 2 cut(s) | 18, 3084 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 356, 836, 1106, 1310, 1587, 2123, 2654, 3444 |
| NarI | GGCGCC | 1 cut(s) | 968 |
| NcoI | CCATGG | 2 cut(s) | 992, 2593 |
| NdeI | CATATG | 2 cut(s) | 108, 2871 |
| NmeAIII | GCCGAG | 1 cut(s) | 1413 |
| NmuCI | GTSAC | 7 cut(s) | 141, 958, 1200, 2196, 3155, 3345, 3363 |
| NruI | TCGCGA | 1 cut(s) | 18 |
| NsbI | TGCGCA | 1 cut(s) | 65 |
| NsiI | ATGCAT | 2 cut(s) | 268, 3517 |
| NspI | RCATGY | 5 cut(s) | 1129, 1387, 1802, 3329, 3515 |
| PagI | TCATGA | 2 cut(s) | 556, 1449 |
| PciI | ACATGT | 2 cut(s) | 1798, 3325 |
| PctI | GAATGC | 4 cut(s) | 90, 217, 759, 3337 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1117, 3478 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1552, 3097 |
| PkrI | GCNGC | 6 cut(s) | 1102, 1701, 2237, 2395, 2839, 3127 |
| PleI | GAGTC | 5 cut(s) | 547, 634, 2005, 3297, 3352 |
| PluTI | GGCGCC | 1 cut(s) | 971 |
| PmaCI | CACGTG | 1 cut(s) | 380 |
| PmlI | CACGTG | 1 cut(s) | 380 |
| PpsI | GAGTC | 5 cut(s) | 547, 634, 2005, 3297, 3352 |
| Ppu21I | YACGTR | 1 cut(s) | 380 |
| PpuMI | RGGWCCY | 2 cut(s) | 154, 190 |
| PscI | ACATGT | 2 cut(s) | 1798, 3325 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2822 |
| PsiI | TTATAA | 1 cut(s) | 2247 |
| Psp124BI | GAGCTC | 1 cut(s) | 1537 |
| Psp5II | RGGWCCY | 2 cut(s) | 154, 190 |
| Psp6I | CCWGG | 2 cut(s) | 5, 1856 |
| PspCI | CACGTG | 1 cut(s) | 380 |
| PspFI | CCCAGC | 3 cut(s) | 1695, 2642, 3072 |
| PspGI | CCWGG | 2 cut(s) | 5, 1856 |
| PspPI | GGNCC | 7 cut(s) | 154, 190, 1342, 1487, 1634, 1669, 3057 |
| PspPPI | RGGWCCY | 2 cut(s) | 154, 190 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1703, 1735 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2068 |
| PsuI | RGATCY | 5 cut(s) | 24, 1316, 1402, 1936, 2101 |
| PvuII | CAGCTG | 2 cut(s) | 1699, 2393 |
| RruI | TCGCGA | 1 cut(s) | 18 |
| RsaI | GTAC | 4 cut(s) | 617, 1498, 1712, 3088 |
| RsaNI | GTAC | 4 cut(s) | 616, 1497, 1711, 3087 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1130, 2598 |
| SacI | GAGCTC | 1 cut(s) | 1537 |
| SaqAI | TTAA | 7 cut(s) | 1083, 2024, 2136, 2378, 2460, 2480, 3440 |
| SatI | GCNGC | 6 cut(s) | 1101, 1700, 2236, 2394, 2838, 3126 |
| Sau96I | GGNCC | 7 cut(s) | 154, 190, 1342, 1487, 1634, 1669, 3057 |
| SchI | GAGTC | 5 cut(s) | 547, 634, 2005, 3298, 3353 |
| ScrFI | CCNGG | 2 cut(s) | 7, 1858 |
| SduI | GDGCHC | 6 cut(s) | 631, 1519, 1537, 1792, 2995, 3205 |
| SfcI | CTRYAG | 3 cut(s) | 834, 1906, 2883 |
| SfoI | GGCGCC | 1 cut(s) | 969 |
| SinI | GGWCC | 4 cut(s) | 154, 190, 1487, 1669 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1130, 2598 |
| SmlI | CTYRAG | 5 cut(s) | 29, 894, 1147, 1562, 2762 |
| SmoI | CTYRAG | 5 cut(s) | 29, 894, 1147, 1562, 2762 |
| SpeI | ACTAGT | 1 cut(s) | 1183 |
| SsiI | CCGC | 3 cut(s) | 1348, 1996, 3084 |
| SspDI | GGCGCC | 1 cut(s) | 967 |
| SspI | AATATT | 2 cut(s) | 1117, 1524 |
| SstI | GAGCTC | 1 cut(s) | 1537 |
| StyD4I | CCNGG | 2 cut(s) | 5, 1856 |
| StyI | CCWWGG | 4 cut(s) | 992, 2472, 2593, 3134 |
| TaiI | ACGT | 6 cut(s) | 382, 687, 692, 721, 2638, 3355 |
| TatI | WGTACW | 2 cut(s) | 615, 1710 |
| Tru1I | TTAA | 7 cut(s) | 1083, 2024, 2136, 2378, 2460, 2480, 3440 |
| Tru9I | TTAA | 7 cut(s) | 1083, 2024, 2136, 2378, 2460, 2480, 3440 |
| TscAI | CASTG | 6 cut(s) | 424, 781, 1179, 1965, 2217, 2851 |
| TseFI | GTSAC | 7 cut(s) | 141, 958, 1200, 2196, 3155, 3345, 3363 |
| TseI | GCWGC | 6 cut(s) | 1100, 1699, 2235, 2393, 2837, 3125 |
| Tsp45I | GTSAC | 7 cut(s) | 141, 958, 1200, 2196, 3155, 3345, 3363 |
| TspGWI | ACGGA | 1 cut(s) | 3385 |
| TspRI | CASTG | 6 cut(s) | 424, 781, 1179, 1965, 2217, 2851 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1552, 3097 |
| VpaK11BI | GGWCC | 4 cut(s) | 154, 190, 1487, 1669 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2664 |
| XapI | RAATTY | 8 cut(s) | 574, 803, 1417, 2149, 2620, 2745, 2792, 3269 |
| XbaI | TCTAGA | 4 cut(s) | 842, 1939, 2014, 3458 |
| XceI | RCATGY | 5 cut(s) | 1129, 1387, 1802, 3329, 3515 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2302, 3176 |
| XmaJI | CCTAGG | 1 cut(s) | 3134 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1117, 3478 |
| Zsp2I | ATGCAT | 2 cut(s) | 268, 3517 |