Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005890

Physical Location & Seq

Genomic Coordinates Forward (+)

8283528 .. 8291123

Gene Structure 7596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG091500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2805 bp

ATGACCAGGGCTGTCCGAGATAGGATTCTCAAGGATGCAAATGGTGACATTAGTGATCATCTGCGCAACCACATTCATTTGACAAATTGCATTCACTTGAAGAACCATATGCACAAGCACAGCCCCATATTGGCCGATAGGTCACTTATGAGGGACTTGGTTGTCCTTCAGAGGTCTCGATCTCTCAGGGACCCTTCTGCGAGCCCTCCTTCATGGCAGTCTCCTTCCATTGTTGAAATGCTTTCCAAGAAAGGTGAAAATGCTCCCCTGGTGCGGGAGGGGAGAAGGTCGGTAGGAAGTGAGCATCGAAGAGAAGGTAGGAGGTTGTTGCCAAGTTCTCCACCTATAGCAAGTTTCGGAACATCAAGAGTTGCTCCAGATGAAGCTAATGGGGAGAATGATGTGTTAGCTGGAATGAGTGAACATGGAAGCAAGAGTGGAAGAAGAGTTAGAAGAGAAGAATCTAGTCAGAAGAGCAATAGGATTGATATTTTGGGTGGCAATGAGGAGTCTCCACTAGATCAAAAGGGTCATGATTTAAGTCATGACACTGTTTCCCGAAATTCAGAATCAAAAAGTAGAAAAAGTAAACAAAAGGGAAAGCACATCCAAGGTGTTCAGATGAAGACTCTCTCGGAGCAATTGAATGAAGTTAGGATGGATAGTGATGATTTAGCATCGTCCAACATTCATCTACCTGGAAGACGGTCACGACAGGAAGGAATTGTTCAGGAACCGGAAGTCAGCATTCGAGGCAATTGCAGTGGACTGAGTAGGGTAAAACGGCGGAGATTTCGAGGTGGCAGAAGAAGCCGTGCTTCTGTAGCTTCCAGAGACATTGGAGCTCATAATGATTTGTCTGTGGCTTCTAATACTTTAGGCCATGGGTCAGCTCACTCAAAGTATCACATGGAGCAGGAGCAGGAGCAGGGAGAGGATGAGTATGAGGAGCAAAATGTCACAAGGGCTCCTGGAAATGGGTGCGGGATTCCATGGAATTGGTCAAGGATCCACGATAGAGGCAAATCATTCCTTGACATAGCTGGAAGGAGTTTTTCATGTGGTATGTCTGATTCAAGGTTTAAGAAAGGTGATCTGGGTGCTCATGGCAGAGACATCTCTGACATGCCTATGGCCTCCGATAATTCGAGCTCTTCTACTAAATATGATGCCGAGGCATTGCCTTTACTAGTTGATGCATCCGGATCACAGGAAAGCGCTGGTTGGGTACATGACTACTCTGGCGAACTAGGTATATATGCTGATAATCTATTCAAGCATGATGTAGGTTCTGAATTTGCTTCTGAAGCTAGATCTGGTGATCAACGCAAATTGAGAGGGCATCGCCATGGCAGACACCAAAATCTGACGCAGAAGTACATGCCAAAAACCTTTAGAGATCTTGTGGGACAGAATTTAGCGGTGCAAGCTCTTTCCAATGCTGTCATGAAAAAGAAAGTTGGGTTGCTCTATGTATTCTACGGTCCTCATGGTACAGGAAAAACGTCCTGTGCTCGCATATTTGCTAGAGCTTTGAATTGCCAGTCTTTGGATCGTCCAAAGCCTTGCGGCTGTTGCAATTCTTGCATTGCACACGATGTGGGTAAGAATAGAAATATAAGGGAAGTTGGCCCTGTTAGTAATATTGACTTTGAGATCATCGTGGACCTACTTGACAATATGAGCATTTCCCAGCTGCCATCACAGTACAGAGTGTTCATCTTCGATGACTGTGATACTTTATCCCAGGAATGCTGGAGTGCCATATCAAAGGTCATTGATCGAGCACCCAGACGTGTGGTTTTTGTCCTTGTCTGTTCAAGTCTTGATGTTTTGCCTCACATAATCATATCCAGGTGTCAGAAATTCTTTTTCCCAAAGCTAAAGGATGCAGATATTATATACTCTTTGCAATGGATTGCAACCAAAGACGACTTAGAAATTGACAAGGATGCACTGAAACTTATTGCCTCAAGATCAGATGGTTCATTGAGGGATGCTGAGATGACTCTAGAGCAACTGAGTTTGCTTGGCCAGAGAATCTCTGTTCCTCTAGTTCAGGAACTAGTTGGGCTTATCTCTGATGAGAGATTGGTGGATCTGCTTGATTTAGCATTGTCTGCAGACACAGTTAATACTGTGAAGAATTTGAGAGTGATAATGGAAAGTGGTGTTGAGCCATTAGCCTTGATGTCACAACTTGCAACAGTCATTACAGATATACTTGCTGGCAGCTATGATTATACCAAAGAAGGGCGTAGAAGGAAGTTCTTTAGGCACCAACCATTATCAAAAGAAGACATGGAAAAACTGCGTCAAGCTTTGAAAACTTTATCTGAGGCTGAAAAGCAATTGAGGACATCAAATGACAAGTTAACATGGCTAACGGCTGCGCTTCTCCAACTTGCTCCTGATCAGCAGTACATGTTGCCTAGTTCTTCTGCAGGCACTAGCAATCACAGTCCTTTGGCCTTAAATAATGCTGGTGTAAGGGATGTTCCTAGTTATGACAGAGGCTTGCCAACAAATGTTAAAAATGCCGGAAGTTCCAGTTTCTATGGCAATGGCTCAGTAAAAGGTAGGAGTTTAGATAGAAAAAGTCATGCTGGGGATGGTATGGCTATAGCTACAAACTCTGCTGACATAGTAAAAGGGACTGGGAGGAATAATGTTGACAGAAGTTATAAAGCAATTGAAGAAATTTGGTTGGAGGTGCTTGAGAAAATTCCATATAATCGCATAAAAGAGTTTTTGTACCAAGAAGGGAAGCTAATATCAGTCAGTTTTGGTGCAGGTATGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

934

Amino Acids

103.64

Weight (kDa)

8.98

Isoelectric Point (pI)

53.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol3_delta2	PF13177	471 - 628	1.2e-23	DNA polymerase III, delta subunit
AAA	PF00004	492 - 625	7.4e-06	ATPase family associated with various cellular activities (AAA)
DNA_pol3_gamma3	PF12169	684 - 808	1.1e-06	DNA polymerase III subunits gamma and tau domain III
DnaA_N-like_STI	PF23007	893 - 932	3.6e-10	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18820
fragaria_vesca	FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230
malus_domestica	MD00G1008200.v1.1 MD10G1274700.v1.1
prunus_persica	Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1
pyrus_communis	pycom05g27350 pycom10g22920
rosa_chinensis	RchiOBHm_Chr5g0011921
rosa_laevigata	RLG00000031869
rosa_multiflora	Rmu_sc0001475.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064670
rosa_rugosa	Rorug04G0460000 Rorug04G0460100
rosa_samantha	Rh5AG091500 Rh5BG087300 Rh5CG101200 Rh5DG087900
rosa_wichuraiana	Rw5G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2685
AasI	GACNNNNNNGTC	1 cut(s)	161
Acc16I	TGCGCA	1 cut(s)	65
Acc36I	ACCTGC	1 cut(s)	2783
AccB1I	GGYRCC	1 cut(s)	2277
AccB7I	CCANNNNNTGG	1 cut(s)	1549
AccIII	TCCGGA	1 cut(s)	1202
AciI	CCGC	5 cut(s)	274, 787, 984, 1421, 1569
AclWI	GGATC	5 cut(s)	1003, 1016, 1213, 1560, 2106
AcoI	YGGCCR	2 cut(s)	132, 2032
AcsI	RAATTY	7 cut(s)	562, 1295, 1414, 1865, 2146, 2700, 2724
AcuI	CTGAAG	2 cut(s)	152, 1326
AdeI	CACNNNGTG	1 cut(s)	1600
AfaI	GTAC	6 cut(s)	1230, 1379, 1495, 1709, 2423, 2756
AfeI	AGCGCT	1 cut(s)	1219
AfiI	CCNNNNNNNGG	6 cut(s)	130, 273, 274, 977, 1549, 2253
AflIII	ACRYGT	2 cut(s)	1795, 2424
AgsI	TTSAA	9 cut(s)	100, 236, 646, 1077, 1276, 1537, 1821, 2326, 2696
AhlI	ACTAGT	2 cut(s)	1189, 2065
AjiI	CACGTC	1 cut(s)	1796
AjnI	CCWGG	6 cut(s)	5, 267, 697, 970, 1746, 1853
Alw21I	GWGCWC	5 cut(s)	847, 1105, 1154, 1516, 1789
Alw26I	GTCTC	5 cut(s)	180, 225, 516, 828, 1107
AlwI	GGATC	5 cut(s)	1003, 1016, 1213, 1560, 2106
Aor13HI	TCCGGA	1 cut(s)	1202
Aor51HI	AGCGCT	1 cut(s)	1219
AoxI	GGCC	6 cut(s)	132, 880, 1134, 1630, 2032, 2469
ApeKI	GCWGC	3 cut(s)	1696, 2232, 2390
ApoI	RAATTY	7 cut(s)	562, 1295, 1414, 1865, 2146, 2700, 2724
AspLEI	GCGC	3 cut(s)	66, 1220, 2395
AspS9I	GGNCC	4 cut(s)	190, 1484, 1631, 1666
AsuHPI	GGTGA	4 cut(s)	56, 266, 1103, 1331
AvaII	GGWCC	3 cut(s)	190, 1484, 1666
BalI	TGGCCA	1 cut(s)	2034
BamHI	GGATCC	1 cut(s)	1008
BanI	GGYRCC	1 cut(s)	2277
BanII	GRGCYC	4 cut(s)	206, 847, 970, 1154
BbsI	GAAGAC	3 cut(s)	632, 709, 2304
Bbv12I	GWGCWC	5 cut(s)	847, 1105, 1154, 1516, 1789
BbvI	GCAGC	3 cut(s)	1683, 2244, 2377
BccI	CCATC	4 cut(s)	652, 1708, 1976, 2606
BceAI	ACGGC	3 cut(s)	798, 800, 2403
BcgI	CGANNNNNNTGC	2 cut(s)	741, 775
BciT130I	CCWGG	6 cut(s)	7, 269, 699, 972, 1748, 1855
BclI	TGATCA	3 cut(s)	55, 1321, 2413
BcoDI	GTCTC	5 cut(s)	180, 225, 516, 828, 1107
BcuI	ACTAGT	2 cut(s)	1189, 2065
BfmI	CTRYAG	5 cut(s)	345, 822, 2121, 2442, 2622
BfoI	RGCGCY	1 cut(s)	1221
BfuAI	ACCTGC	1 cut(s)	2783
BglII	AGATCT	2 cut(s)	1313, 1399
BisI	GCNGC	4 cut(s)	1570, 1697, 2233, 2391
BlsI	GCNGC	4 cut(s)	1571, 1698, 2234, 2392
Bme1390I	CCNGG	6 cut(s)	7, 269, 699, 972, 1748, 1855
Bme18I	GGWCC	3 cut(s)	190, 1484, 1666
BmgBI	CACGTC	1 cut(s)	1796
BmgT120I	GGNCC	4 cut(s)	190, 1484, 1631, 1666
BmiI	GGNNCC	6 cut(s)	191, 192, 735, 969, 1010, 2279
BmrFI	CCNGG	6 cut(s)	7, 269, 699, 972, 1748, 1855
BmrI	ACTGGG	1 cut(s)	2667
BmuI	ACTGGG	1 cut(s)	2667
BpiI	GAAGAC	3 cut(s)	632, 709, 2304
BpmI	CTGGAG	2 cut(s)	360, 1777
BpuEI	CTTGAG	3 cut(s)	14, 1957, 2738
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	8 cut(s)	6, 267, 610, 883, 992, 1173, 1348, 1746
BsaWI	WCCGGW	2 cut(s)	736, 1202
BsaXI	ACNNNNNCTCC	2 cut(s)	952, 982
Bsc4I	CCNNNNNNNGG	6 cut(s)	130, 273, 274, 977, 1549, 2253
Bse1I	ACTGG	3 cut(s)	1543, 2550, 2662
Bse3DI	GCAATG	5 cut(s)	508, 1178, 1587, 1919, 2569
BseAI	TCCGGA	1 cut(s)	1202
BseBI	CCWGG	6 cut(s)	7, 269, 699, 972, 1748, 1855
BseDI	CCNNGG	8 cut(s)	6, 267, 610, 883, 992, 1173, 1348, 1746
BseLI	CCNNNNNNNGG	6 cut(s)	130, 273, 274, 977, 1549, 2253
BseMI	GCAATG	5 cut(s)	508, 1178, 1587, 1919, 2569
BseMII	CTCAG	6 cut(s)	199, 761, 1992, 2012, 2328, 2583
BseNI	ACTGG	3 cut(s)	1543, 2550, 2662
BseRI	GAGGAG	2 cut(s)	521, 962
BseXI	GCAGC	3 cut(s)	1683, 2244, 2377
BseYI	CCCAGC	2 cut(s)	1692, 2606
BshFI	GGCC	6 cut(s)	134, 882, 1136, 1632, 2034, 2471
BshNI	GGYRCC	1 cut(s)	2277
BsiHKAI	GWGCWC	5 cut(s)	847, 1105, 1154, 1516, 1789
BsiSI	CCGG	3 cut(s)	737, 1203, 2541
BslFI	GGGAC	4 cut(s)	167, 203, 1422, 2668
BslI	CCNNNNNNNGG	6 cut(s)	130, 273, 274, 977, 1549, 2253
BsmAI	GTCTC	5 cut(s)	180, 225, 516, 828, 1107
BsmFI	GGGAC	4 cut(s)	167, 203, 1422, 2668
BsmI	GAATGC	3 cut(s)	90, 747, 1757
BsnI	GGCC	6 cut(s)	134, 882, 1136, 1632, 2034, 2471
Bso31I	GGTCTC	1 cut(s)	180
Bsp1286I	GDGCHC	7 cut(s)	206, 847, 970, 1105, 1154, 1516, 1789
Bsp13I	TCCGGA	1 cut(s)	1202
Bsp19I	CCATGG	3 cut(s)	883, 992, 1348
BspACI	CCGC	5 cut(s)	274, 787, 984, 1421, 1569
BspANI	GGCC	6 cut(s)	134, 882, 1136, 1632, 2034, 2471
BspCNI	CTCAG	6 cut(s)	198, 762, 1993, 2013, 2329, 2582
BspEI	TCCGGA	1 cut(s)	1202
BspHI	TCATGA	3 cut(s)	532, 544, 1446
BspLI	GGNNCC	6 cut(s)	191, 192, 735, 969, 1010, 2279
BspMAI	CTGCAG	2 cut(s)	2125, 2446
BspMI	ACCTGC	1 cut(s)	2783
BspPI	GGATC	5 cut(s)	1003, 1016, 1213, 1560, 2106
BspQI	GCTCTTC	2 cut(s)	467, 1159
BspT107I	GGYRCC	1 cut(s)	2277
BspTNI	GGTCTC	1 cut(s)	180
BsrDI	GCAATG	5 cut(s)	508, 1178, 1587, 1919, 2569
BsrI	ACTGG	3 cut(s)	1543, 2550, 2662
BssECI	CCNNGG	8 cut(s)	6, 267, 610, 883, 992, 1173, 1348, 1746
BssT1I	CCWWGG	4 cut(s)	610, 883, 992, 1348
Bst2UI	CCWGG	6 cut(s)	7, 269, 699, 972, 1748, 1855
Bst4CI	ACNGT	9 cut(s)	553, 708, 1484, 1707, 1733, 2131, 2140, 2209, 2462
Bst6I	CTCTTC	5 cut(s)	304, 439, 448, 467, 1159
BstAPI	GCANNNNNTGC	2 cut(s)	1584, 2120
BstC8I	GCNNGC	6 cut(s)	202, 1428, 1516, 2230, 2446, 2519
BstDEI	CTNAG	7 cut(s)	185, 770, 1936, 2001, 2021, 2337, 2569
BstDSI	CCRYGG	3 cut(s)	883, 992, 1348
BstH2I	RGCGCY	1 cut(s)	1221
BstHHI	GCGC	3 cut(s)	66, 1220, 2395
BstMAI	GTCTC	5 cut(s)	180, 225, 516, 828, 1107
BstMWI	GCNNNNNNNGC	8 cut(s)	753, 810, 824, 1307, 1427, 1575, 1584, 2120
BstNI	CCWGG	6 cut(s)	7, 269, 699, 972, 1748, 1855
BstNSI	RCATGY	3 cut(s)	1129, 1384, 2428
BstSCI	CCNGG	6 cut(s)	5, 267, 697, 970, 1746, 1853
BstSFI	CTRYAG	5 cut(s)	345, 822, 2121, 2442, 2622
BstV1I	GCAGC	3 cut(s)	1683, 2244, 2377
BstV2I	GAAGAC	3 cut(s)	632, 709, 2304
BstX2I	RGATCY	4 cut(s)	1008, 1313, 1399, 2098
BstXI	CCANNNNNNTGG	2 cut(s)	999, 1798
BstYI	RGATCY	4 cut(s)	1008, 1313, 1399, 2098
BsuRI	GGCC	6 cut(s)	134, 882, 1136, 1632, 2034, 2471
BtgI	CCRYGG	3 cut(s)	883, 992, 1348
BtgZI	GCGATG	1 cut(s)	1328
BtrI	CACGTC	1 cut(s)	1796
BtsI	GCAGTG	1 cut(s)	769
BtsIMutI	CAGTG	3 cut(s)	549, 769, 1955
BveI	ACCTGC	1 cut(s)	2783
Cac8I	GCNNGC	6 cut(s)	202, 1428, 1516, 2230, 2446, 2519
CciI	TCATGA	3 cut(s)	532, 544, 1446
CfoI	GCGC	3 cut(s)	66, 1220, 2395
Cfr13I	GGNCC	4 cut(s)	190, 1484, 1631, 1666
CseI	GACGC	2 cut(s)	1378, 2303
Csp6I	GTAC	6 cut(s)	1229, 1378, 1494, 1708, 2422, 2755
CspCI	CAANNNNNGTGG	2 cut(s)	745, 780
CviQI	GTAC	6 cut(s)	1229, 1378, 1494, 1708, 2422, 2755
DdeI	CTNAG	7 cut(s)	185, 770, 1936, 2001, 2021, 2337, 2569
DraIII	CACNNNGTG	1 cut(s)	1600
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	2 cut(s)	132, 2032
Eam1104I	CTCTTC	5 cut(s)	304, 439, 448, 467, 1159
EarI	CTCTTC	5 cut(s)	304, 439, 448, 467, 1159
EciI	GGCGGA	1 cut(s)	802
Ecl136II	GAGCTC	2 cut(s)	845, 1152
Eco130I	CCWWGG	4 cut(s)	610, 883, 992, 1348
Eco24I	GRGCYC	4 cut(s)	206, 847, 970, 1154
Eco31I	GGTCTC	1 cut(s)	180
Eco47I	GGWCC	3 cut(s)	190, 1484, 1666
Eco47III	AGCGCT	1 cut(s)	1219
Eco53kI	GAGCTC	2 cut(s)	845, 1152
Eco57I	CTGAAG	2 cut(s)	152, 1326
EcoICRI	GAGCTC	2 cut(s)	845, 1152
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	6 cut(s)	5, 267, 697, 970, 1746, 1853
EcoT14I	CCWWGG	4 cut(s)	610, 883, 992, 1348
EcoT22I	ATGCAT	1 cut(s)	1201
EcoT38I	GRGCYC	4 cut(s)	206, 847, 970, 1154
ErhI	CCWWGG	4 cut(s)	610, 883, 992, 1348
FalI	AAGNNNNNCTT	2 cut(s)	802, 834
FaqI	GGGAC	4 cut(s)	167, 203, 1422, 2668
FauI	CCCGC	2 cut(s)	267, 977
FauNDI	CATATG	1 cut(s)	108
FbaI	TGATCA	3 cut(s)	55, 1321, 2413
Fnu4HI	GCNGC	4 cut(s)	1570, 1697, 2233, 2391
FriOI	GRGCYC	4 cut(s)	206, 847, 970, 1154
Fsp4HI	GCNGC	4 cut(s)	1570, 1697, 2233, 2391
FspI	TGCGCA	1 cut(s)	65
GlaI	GCGC	3 cut(s)	65, 1219, 2394
GluI	GCNGC	4 cut(s)	1570, 1697, 2233, 2391
GsaI	CCCAGC	2 cut(s)	1696, 2610
GsuI	CTGGAG	2 cut(s)	360, 1777
HaeII	RGCGCY	1 cut(s)	1221
HaeIII	GGCC	6 cut(s)	134, 882, 1136, 1632, 2034, 2471
HapII	CCGG	3 cut(s)	737, 1203, 2541
HgaI	GACGC	2 cut(s)	1378, 2303
HhaI	GCGC	3 cut(s)	66, 1220, 2395
Hin6I	GCGC	3 cut(s)	64, 1218, 2393
HinP1I	GCGC	3 cut(s)	64, 1218, 2393
HincII	GTYRAC	2 cut(s)	2376, 2674
HindII	GTYRAC	2 cut(s)	2376, 2674
HindIII	AAGCTT	1 cut(s)	2319
HinfI	GANTC	9 cut(s)	25, 461, 509, 569, 628, 988, 1073, 2008, 2040
HpaI	GTTAAC	1 cut(s)	2376
HpaII	CCGG	3 cut(s)	737, 1203, 2541
HphI	GGTGA	4 cut(s)	56, 266, 1103, 1331
Hpy166II	GTNNAC	6 cut(s)	422, 590, 767, 1666, 2376, 2674
Hpy8I	GTNNAC	6 cut(s)	422, 590, 767, 1666, 2376, 2674
HpyCH4III	ACNGT	9 cut(s)	553, 708, 1484, 1707, 1733, 2131, 2140, 2209, 2462
HpyCH4IV	ACGT	2 cut(s)	1505, 1795
HpyF10VI	GCNNNNNNNGC	8 cut(s)	753, 810, 824, 1307, 1427, 1575, 1584, 2120
HpyF3I	CTNAG	7 cut(s)	185, 770, 1936, 2001, 2021, 2337, 2569
HpySE526I	ACGT	2 cut(s)	1505, 1795
HspAI	GCGC	3 cut(s)	64, 1218, 2393
KflI	GGGWCCC	1 cut(s)	190
Kpn2I	TCCGGA	1 cut(s)	1202
Ksp22I	TGATCA	3 cut(s)	55, 1321, 2413
KspAI	GTTAAC	1 cut(s)	2376
LguI	GCTCTTC	2 cut(s)	467, 1159
Lsp1109I	GCAGC	3 cut(s)	1683, 2244, 2377
MaeII	ACGT	2 cut(s)	1505, 1795
MaeIII	GTNAC	5 cut(s)	44, 141, 708, 958, 2193
MfeI	CAATTG	4 cut(s)	641, 757, 2351, 2691
MflI	RGATCY	4 cut(s)	1008, 1313, 1399, 2098
MhlI	GDGCHC	7 cut(s)	206, 847, 970, 1105, 1154, 1516, 1789
MlsI	TGGCCA	1 cut(s)	2034
MluNI	TGGCCA	1 cut(s)	2034
MlyI	GAGTC	3 cut(s)	518, 622, 2002
MmeI	TCCRAC	3 cut(s)	708, 2425, 2688
Mox20I	TGGCCA	1 cut(s)	2034
Mph1103I	ATGCAT	1 cut(s)	1201
MroI	TCCGGA	1 cut(s)	1202
MscI	TGGCCA	1 cut(s)	2034
MseI	TTAA	7 cut(s)	539, 1083, 2133, 2375, 2474, 2532, 2803
MslI	CAYNNNNRTG	2 cut(s)	1130, 1347
Msp20I	TGGCCA	1 cut(s)	2034
MspA1I	CMGCKG	1 cut(s)	1696
MspI	CCGG	3 cut(s)	737, 1203, 2541
MspR9I	CCNGG	6 cut(s)	7, 269, 699, 972, 1748, 1855
MunI	CAATTG	4 cut(s)	641, 757, 2351, 2691
Mva1269I	GAATGC	3 cut(s)	90, 747, 1757
MvaI	CCWGG	6 cut(s)	7, 269, 699, 972, 1748, 1855
MwoI	GCNNNNNNNGC	8 cut(s)	753, 810, 824, 1307, 1427, 1575, 1584, 2120
NcoI	CCATGG	3 cut(s)	883, 992, 1348
NdeI	CATATG	1 cut(s)	108
NlaIV	GGNNCC	6 cut(s)	191, 192, 735, 969, 1010, 2279
NmeAIII	GCCGAG	1 cut(s)	1198
NmuCI	GTSAC	5 cut(s)	44, 141, 708, 958, 2193
NsbI	TGCGCA	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	1201
NspI	RCATGY	3 cut(s)	1129, 1384, 2428
PagI	TCATGA	3 cut(s)	532, 544, 1446
PciI	ACATGT	1 cut(s)	2424
PciSI	GCTCTTC	2 cut(s)	467, 1159
PctI	GAATGC	3 cut(s)	90, 747, 1757
PfeI	GAWTC	6 cut(s)	25, 461, 569, 988, 1073, 2040
PflMI	CCANNNNNTGG	1 cut(s)	1549
PfoI	TCCNGGA	1 cut(s)	970
PkrI	GCNGC	4 cut(s)	1571, 1698, 2234, 2392
PleI	GAGTC	3 cut(s)	517, 622, 2002
PpsI	GAGTC	3 cut(s)	517, 622, 2002
PpuMI	RGGWCCY	1 cut(s)	190
PscI	ACATGT	1 cut(s)	2424
PsiI	TTATAA	1 cut(s)	2685
Psp124BI	GAGCTC	2 cut(s)	847, 1154
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	6 cut(s)	5, 267, 697, 970, 1746, 1853
PspFI	CCCAGC	2 cut(s)	1692, 2606
PspGI	CCWGG	6 cut(s)	5, 267, 697, 970, 1746, 1853
PspN4I	GGNNCC	6 cut(s)	191, 192, 735, 969, 1010, 2279
PspPI	GGNCC	4 cut(s)	190, 1484, 1631, 1666
PspPPI	RGGWCCY	1 cut(s)	190
PsrI	GAACNNNNNNTAC	4 cut(s)	1700, 1732, 2481, 2513
PstI	CTGCAG	2 cut(s)	2125, 2446
PsuI	RGATCY	4 cut(s)	1008, 1313, 1399, 2098
PvuII	CAGCTG	1 cut(s)	1696
RsaI	GTAC	6 cut(s)	1230, 1379, 1495, 1709, 2423, 2756
RsaNI	GTAC	6 cut(s)	1229, 1378, 1494, 1708, 2422, 2755
RseI	CAYNNNNRTG	2 cut(s)	1130, 1347
SacI	GAGCTC	2 cut(s)	847, 1154
SapI	GCTCTTC	2 cut(s)	467, 1159
SaqAI	TTAA	7 cut(s)	539, 1083, 2133, 2375, 2474, 2532, 2803
SatI	GCNGC	4 cut(s)	1570, 1697, 2233, 2391
Sau96I	GGNCC	4 cut(s)	190, 1484, 1631, 1666
SchI	GAGTC	3 cut(s)	518, 622, 2002
ScrFI	CCNGG	6 cut(s)	7, 269, 699, 972, 1748, 1855
SduI	GDGCHC	7 cut(s)	206, 847, 970, 1105, 1154, 1516, 1789
SfcI	CTRYAG	5 cut(s)	345, 822, 2121, 2442, 2622
SinI	GGWCC	3 cut(s)	190, 1484, 1666
SmiMI	CAYNNNNRTG	2 cut(s)	1130, 1347
SmlI	CTYRAG	3 cut(s)	29, 1972, 2717
SmoI	CTYRAG	3 cut(s)	29, 1972, 2717
SpeI	ACTAGT	2 cut(s)	1189, 2065
SsiI	CCGC	5 cut(s)	274, 787, 984, 1421, 1569
SspI	AATATT	1 cut(s)	1645
SstI	GAGCTC	2 cut(s)	847, 1154
StyD4I	CCNGG	6 cut(s)	5, 267, 697, 970, 1746, 1853
StyI	CCWWGG	4 cut(s)	610, 883, 992, 1348
TaaI	ACNGT	9 cut(s)	553, 708, 1484, 1707, 1733, 2131, 2140, 2209, 2462
TaiI	ACGT	2 cut(s)	1508, 1798
TaqI	TCGA	7 cut(s)	178, 307, 751, 796, 1148, 1725, 1783
TatI	WGTACW	3 cut(s)	1377, 1707, 2421
TauI	GCSGC	1 cut(s)	1572
TfiI	GAWTC	6 cut(s)	25, 461, 569, 988, 1073, 2040
Tru1I	TTAA	7 cut(s)	539, 1083, 2133, 2375, 2474, 2532, 2803
Tru9I	TTAA	7 cut(s)	539, 1083, 2133, 2375, 2474, 2532, 2803
TscAI	CASTG	3 cut(s)	556, 769, 1962
TseFI	GTSAC	5 cut(s)	44, 141, 708, 958, 2193
TseI	GCWGC	3 cut(s)	1696, 2232, 2390
Tsp45I	GTSAC	5 cut(s)	44, 141, 708, 958, 2193
TspRI	CASTG	3 cut(s)	556, 769, 1962
Van91I	CCANNNNNTGG	1 cut(s)	1549
VpaK11BI	GGWCC	3 cut(s)	190, 1484, 1666
XapI	RAATTY	7 cut(s)	562, 1295, 1414, 1865, 2146, 2700, 2724
XbaI	TCTAGA	1 cut(s)	2011
XceI	RCATGY	3 cut(s)	1129, 1384, 2428
Zsp2I	ATGCAT	1 cut(s)	1201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.