Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005890

Physical Location & Seq

Genomic Coordinates Forward (+)

7747612 .. 7753660

Gene Structure 6049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG087900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3480 bp

ATGACCAGGGCTGTCCGAGATAGGATTCTCAAGGATGCAAATGGTGACATTAGTGATCATCTGCGCAACCACATTCATTTGACAAATTGCATTCACTTGAAGAACCATATGCACAAGCACAGCCCCATATTGGCCGATAGGTCACTTATGAGGGACTTGGTTGTCCTTCAGAGGTCTCGATCTCTCAGGGACCCTTCTGCGAGCCCTCCTTCATGGCAGTCTCCTTCCATTGTTGAAATGCTTTCCAAGAAAGGTGAAAATGCTCCCCTGGTGCGGGAGGGGAGAAGGTCGGTAGGAAGTGAGCATCGAAGAGAAGGTAGGAGGTTGTTGCCAAGTTCTCCACCTATAGCAAGTTTCGGAACATCAAGAGTTGCTCCAGATGAAGCTAATGGGGAGAATGATGTGTTAGCTGGAATGAGTGAACATGGAAGCAAGAGTGGAAGAAGAGTTAGAAGAGAAGAATCTAGTCAGAAGAGCAATAGGATTGATATTTTGGGTGGCAATGAGGAGTCTCCACTAGATCAAAAGGGTCATGATTTAAGTCATGACACTGTTTCCCGAAATTCAGAATCAAAAAGTAGAAAAAGTAAACAAAAGGGAAAGCACATCCAAGGTGTTCAGATGAAGACTCTCTCGGAGCAATTGAATGAAGTTAGGATGGATAGTGATGATTTAGCATCGTCCAACATTCATCTACCTGGAAGACGGTCACGACAGGAAGGAATTGTTCAGGAACCGGAAGTCAGCATTCGAGGCAATTGCAGTGGACTGAGTAGGGTAAAACGGCGGAGATTTCGAGGTGGCAGAAGAAGCCGTGCTTCTGTAGCTTCCAGAGACATTGGAGCTCATAATGATTTGTCTGTGGCTTCTAATACTTTAGGCCATGGGTCAGCTCACTCAAAGTATCACATGGAGCAGGAGCAGGAGCAGGGAGAGGATGAGTATGAGGAGCAAAATGTCACAAGGGCTCCCGGAAATGGGTGCGGGATTCCATGGAATTGGTCAAGGATCCACGATAGAGGCAAATCATTCCTTGACATAGCTGGAAGGAGTTTTTCATGTGGTATGTCTGATTCAAGGTTTAAGAAAGGTGATCTGGGTGCTCATGGCAGAGACATATCTGACATGCCTATGGCCTCCGATAATTCGAGCTCTTCTACTAAATATGATGCCGAGGCATTGCCTTTACTAGTTGATGCATCCGGATCACAGGAAAGCGCTGGTTGGGTACATGACTACTCTGGCGAACTAGGTATATATGCTGATAATCTATTCAAGCATGATGTAGGTTCTGAATTTGCTTCTGAAGCTAGATCTGGTGATCAACGCAAATTGAGAGGGCATCGCCATGGCAGACACCAAAATCTGACGCAGAAGTACATGCCAAAAACCTTTAGAGATCTTGTGGGACAGAATTTAGCGGTGCAAGCTCTTTCCAATGCTGTCATGAAAAAGAAAGTTGGGTTGCTCTATGTATTCTACGGTCCTCATGGTACAGGAAAAACGTCCTGTGCTCGCATATTTGCTAGAGCTTTGAATTGCCAGTCTTTGGATCGTCCAAAGCCTTGCGGCTGTTGCAATTCTTGCATTGCACACGATGTGGGTAAGAATAGAAATATAAGGGAAGTTGGCCCTGTTAGTAATATTGACTTTGAGATCATCGTGGACCTACTTGACAATATGAGCATTTCCCAGCTGCCATCACAGTACAGAGTGTTCATCTTCGATGACTGTGATACTTTATCCCAGGAGTGCTGGAGTGCCATATCAAAGGTCATTGATCGAGCACCCAGACGTGTGGTTTTTGTCCTTGTCTGTTCAAGTCTTGATGTTTTGCCTCACATAATCATATCCAGGTGTCAGAAATTCTTTTTCCCAAAGCTAAAGGATGCAGATATTATATACTCTTTGCAATGGATTGCAACCAAAGACGACTTAGAAATTGACAAGGATGCACTGAAACTTATTGCCTCAAGATCAGATGGTTCATTGAGGGATGCTGAGATGACTCTAGAGCAACTGAGTTTGCTTGGCCAGAGAATCTCTGTTCCTCTAGTTCAGGAACTAGTTGGGCTTATCTCTGATGAGAGATTGGTGGATCTGCTTGATTTAGCATTGTCTGCAGACACAGTTAATACTGTGAAGAATTTGAGAGTGATAATGGAAAGTGGTGTTGAGCCATTAGCCTTGATGTCACAACTTGCAACAGTCATTACAGATATACTTGCTGGCAGCTATGATTATACCAAAGAAGGGCGTAGAAGGAAGTTCTTTAGGCACCAACCATTATCAAAAGAAGACATGGAAAAACTGCGTCAAGCTTTGAAAACTTTATCTGAGGCTGAAAAGCAATTGAGGACATCAAATGACAAGTTAACATGGCTAACAGCTGCGCTTCTCCAACTTGCTCCTGATCAGCAGTACATGTTGCCTAGTTCTTCTGCAGGCACTAGCAATCACAGTCCTTTGGCCTTAAATAGTGCTGGTGTAAGGGATGTTCCTAGTTATGACAGAGGCTTACCAACAAATGTTAAAAATGCCGGAAGTTCCAGTTTCTATGGCAATGGCTCAGTAAAAGGTAGGAGTTTAGATAGAAAAAGTCATGCTGGGGATGGTATGGCTATAGCTACAAACTCTGCTGACATAGTAAAAGGGACTGGGAGGAATAATGTTGACAGAAGTTATAAAGCAATTGAAGAAATTTGGTTGGAGGTGCTTGAGAAAATTCCATATAATCGCATAAAAGAGTTTTTGTACCAAGAAGGGAAGCTAATATCAGTCAGTTTTGGTGCAGCTCCCACTGTGCAGTTGATGTTCTCTTCGCATATGACTAAATCTACAGCGGAGAAGTTTAGAGCACAGATATTACAGGCGTTTGAGATGGTTCTCGGGTCTCCCCTGACAGTTGAAATAAGATGTCTATCAAAAAAAGATACCAAGGAAGGGGCCCAGAAGCCTATTATCATACCAGCTTCTAAGGATGGTTTGTCCCAGATTAGAGATAAAAATAGTGTCATCACAGATGCCCAGCACCTACACCCTGACACCCGCGAAATGGGGAAGAGTGAAATTGTTGAGGTAGCTGCTTCTCCTAGGGAAGGCAAGGGAAGTGGTCAGATCGATAACCACAAAGAATCTAGCGCACGGAGGGGAGAAGCATCTATAAAACATAGAGTTGGGGAACAAAGTCAGAGTCAAAGCCTTGTCAGAGGCAAGGTGTCCCTCGCACATGTAATTCAACAGGCAGAAGGATGCTCACAGCTCAGTGGATGGTCACAACGCAAAGCAGTTTCTATTGCTGAAAAGCTTGAACAAGATAATCTGAGATTGGAATCTCAATCGAGAAGTTTGATTTGCTGGAAAGCATCCAGAGTAGCTCGTCGAAAGCTTTCACGTTTGAAAATGAGGACAAGGAGACCACATTCACTGCTGAAGCTTGTTTCCTGTGGCAAGTGCCTCTCTTCAAGATCTCCAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

1159

Amino Acids

128.6

Weight (kDa)

9.4

Isoelectric Point (pI)

53.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol3_delta2	PF13177	471 - 628	1.7e-23	DNA polymerase III, delta subunit
AAA	PF00004	492 - 625	1e-05	ATPase family associated with various cellular activities (AAA)
DNA_pol3_gamma3	PF12169	684 - 808	1.5e-06	DNA polymerase III subunits gamma and tau domain III
DnaA_N-like_STI	PF23007	893 - 973	2.9e-28	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18820
fragaria_vesca	FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230
malus_domestica	MD00G1008200.v1.1 MD10G1274700.v1.1
prunus_persica	Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1
pyrus_communis	pycom05g27350 pycom10g22920
rosa_chinensis	RchiOBHm_Chr5g0011921
rosa_laevigata	RLG00000031869
rosa_multiflora	Rmu_sc0001475.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064670
rosa_rugosa	Rorug04G0460000 Rorug04G0460100
rosa_samantha	Rh5AG091500 Rh5BG087300 Rh5CG101200 Rh5DG087900
rosa_wichuraiana	Rw5G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2685
AasI	GACNNNNNNGTC	1 cut(s)	161
Acc16I	TGCGCA	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	2277
AccB7I	CCANNNNNTGG	1 cut(s)	1549
AccII	CGCG	1 cut(s)	3051
AccIII	TCCGGA	1 cut(s)	1202
AciI	CCGC	7 cut(s)	274, 787, 984, 1421, 1569, 2843, 3049
AclWI	GGATC	5 cut(s)	1003, 1016, 1213, 1560, 2106
AcoI	YGGCCR	2 cut(s)	132, 2032
AcsI	RAATTY	7 cut(s)	562, 1295, 1414, 1865, 2146, 2700, 2724
AcuI	CTGAAG	3 cut(s)	152, 1326, 3452
AdeI	CACNNNGTG	1 cut(s)	1600
AfaI	GTAC	6 cut(s)	1230, 1379, 1495, 1709, 2423, 2756
AfeI	AGCGCT	1 cut(s)	1219
AflIII	ACRYGT	3 cut(s)	1795, 2424, 3229
AhlI	ACTAGT	2 cut(s)	1189, 2065
AjiI	CACGTC	1 cut(s)	1796
AjnI	CCWGG	5 cut(s)	5, 267, 697, 1746, 1853
Alw21I	GWGCWC	6 cut(s)	847, 1105, 1154, 1516, 1789, 2860
Alw26I	GTCTC	7 cut(s)	180, 225, 516, 828, 1107, 2898, 3409
AlwI	GGATC	5 cut(s)	1003, 1016, 1213, 1560, 2106
Ama87I	CYCGRG	1 cut(s)	2888
Aor13HI	TCCGGA	1 cut(s)	1202
Aor51HI	AGCGCT	1 cut(s)	1219
AoxI	GGCC	7 cut(s)	132, 880, 1134, 1630, 2032, 2469, 2946
ApaI	GGGCCC	1 cut(s)	2950
ApeKI	GCWGC	5 cut(s)	1696, 2232, 2390, 2792, 3083
ApoI	RAATTY	7 cut(s)	562, 1295, 1414, 1865, 2146, 2700, 2724
ArsI	GACNNNNNNTTYG	2 cut(s)	3178, 3210
Asp700I	GAANNNNTTC	1 cut(s)	3388
AspA2I	CCTAGG	1 cut(s)	3092
AspLEI	GCGC	4 cut(s)	66, 1220, 2395, 3143
AspS9I	GGNCC	6 cut(s)	190, 1484, 1631, 1666, 2946, 2947
AsuC2I	CCSGG	1 cut(s)	972
AsuHPI	GGTGA	4 cut(s)	56, 266, 1103, 1331
AvaI	CYCGRG	1 cut(s)	2888
AvaII	GGWCC	3 cut(s)	190, 1484, 1666
AvrII	CCTAGG	1 cut(s)	3092
BaeGI	GKGCMC	1 cut(s)	2950
BalI	TGGCCA	1 cut(s)	2034
BamHI	GGATCC	1 cut(s)	1008
BanI	GGYRCC	1 cut(s)	2277
BanII	GRGCYC	5 cut(s)	206, 847, 970, 1154, 2950
BbsI	GAAGAC	3 cut(s)	632, 709, 2304
Bbv12I	GWGCWC	6 cut(s)	847, 1105, 1154, 1516, 1789, 2860
BbvI	GCAGC	5 cut(s)	1683, 2244, 2377, 2804, 3070
BccI	CCATC	7 cut(s)	652, 1708, 1976, 2606, 2875, 2975, 3264
BceAI	ACGGC	2 cut(s)	798, 800
BcgI	CGANNNNNNTGC	2 cut(s)	741, 775
BciT130I	CCWGG	5 cut(s)	7, 269, 699, 1748, 1855
BclI	TGATCA	3 cut(s)	55, 1321, 2413
BcnI	CCSGG	1 cut(s)	972
BcoDI	GTCTC	7 cut(s)	180, 225, 516, 828, 1107, 2898, 3409
BcuI	ACTAGT	2 cut(s)	1189, 2065
BfmI	CTRYAG	6 cut(s)	345, 822, 2121, 2442, 2622, 2838
BfoI	RGCGCY	1 cut(s)	1221
BglII	AGATCT	3 cut(s)	1313, 1399, 3467
BisI	GCNGC	6 cut(s)	1570, 1697, 2233, 2391, 2793, 3084
BlnI	CCTAGG	1 cut(s)	3092
BlsI	GCNGC	6 cut(s)	1571, 1698, 2234, 2392, 2794, 3085
Bme1390I	CCNGG	6 cut(s)	7, 269, 699, 972, 1748, 1855
Bme18I	GGWCC	3 cut(s)	190, 1484, 1666
BmeT110I	CYCGRG	1 cut(s)	2888
BmgBI	CACGTC	1 cut(s)	1796
BmgT120I	GGNCC	6 cut(s)	190, 1484, 1631, 1666, 2946, 2947
BmiI	GGNNCC	8 cut(s)	191, 192, 735, 969, 1010, 2279, 2947, 2948
BmrFI	CCNGG	6 cut(s)	7, 269, 699, 972, 1748, 1855
BmrI	ACTGGG	1 cut(s)	2667
BmuI	ACTGGG	1 cut(s)	2667
BpiI	GAAGAC	3 cut(s)	632, 709, 2304
BpmI	CTGGAG	2 cut(s)	360, 1777
BpuEI	CTTGAG	3 cut(s)	14, 1957, 2738
BpuMI	CCSGG	1 cut(s)	972
Bsa29I	ATCGAT	1 cut(s)	3120
BsaBI	GATNNNNATC	2 cut(s)	2920, 3331
BsaI	GGTCTC	3 cut(s)	180, 2898, 3409
BsaWI	WCCGGW	2 cut(s)	736, 1202
BsaXI	ACNNNNNCTCC	2 cut(s)	952, 982
Bse1I	ACTGG	3 cut(s)	1543, 2550, 2662
Bse3DI	GCAATG	5 cut(s)	508, 1178, 1587, 1919, 2569
Bse8I	GATNNNNATC	2 cut(s)	2920, 3331
BseAI	TCCGGA	1 cut(s)	1202
BseBI	CCWGG	5 cut(s)	7, 269, 699, 1748, 1855
BseCI	ATCGAT	1 cut(s)	3120
BseJI	GATNNNNATC	2 cut(s)	2920, 3331
BseMI	GCAATG	5 cut(s)	508, 1178, 1587, 1919, 2569
BseMII	CTCAG	8 cut(s)	199, 761, 1992, 2012, 2328, 2583, 3277, 3314
BseNI	ACTGG	3 cut(s)	1543, 2550, 2662
BseRI	GAGGAG	2 cut(s)	521, 962
BseSI	GKGCMC	1 cut(s)	2950
BseXI	GCAGC	5 cut(s)	1683, 2244, 2377, 2804, 3070
BseYI	CCCAGC	3 cut(s)	1692, 2606, 3027
BsgI	GTGCAG	2 cut(s)	2811, 2825
Bsh1236I	CGCG	1 cut(s)	3051
BshFI	GGCC	7 cut(s)	134, 882, 1136, 1632, 2034, 2471, 2948
BshNI	GGYRCC	1 cut(s)	2277
BshVI	ATCGAT	1 cut(s)	3120
BsiHKAI	GWGCWC	6 cut(s)	847, 1105, 1154, 1516, 1789, 2860
BsiHKCI	CYCGRG	1 cut(s)	2888
BsiSI	CCGG	4 cut(s)	737, 972, 1203, 2541
BslFI	GGGAC	6 cut(s)	167, 203, 1422, 2668, 2974, 3205
BsmAI	GTCTC	7 cut(s)	180, 225, 516, 828, 1107, 2898, 3409
BsmFI	GGGAC	6 cut(s)	167, 203, 1422, 2668, 2974, 3205
BsmI	GAATGC	2 cut(s)	90, 747
BsnI	GGCC	7 cut(s)	134, 882, 1136, 1632, 2034, 2471, 2948
Bso31I	GGTCTC	3 cut(s)	180, 2898, 3409
BsoBI	CYCGRG	1 cut(s)	2888
Bsp120I	GGGCCC	1 cut(s)	2946
Bsp1286I	GDGCHC	9 cut(s)	206, 847, 970, 1105, 1154, 1516, 1789, 2860, 2950
Bsp13I	TCCGGA	1 cut(s)	1202
Bsp19I	CCATGG	3 cut(s)	883, 992, 1348
BspACI	CCGC	7 cut(s)	274, 787, 984, 1421, 1569, 2843, 3049
BspANI	GGCC	7 cut(s)	134, 882, 1136, 1632, 2034, 2471, 2948
BspCNI	CTCAG	8 cut(s)	198, 762, 1993, 2013, 2329, 2582, 3276, 3315
BspDI	ATCGAT	1 cut(s)	3120
BspEI	TCCGGA	1 cut(s)	1202
BspFNI	CGCG	1 cut(s)	3051
BspHI	TCATGA	3 cut(s)	532, 544, 1446
BspLI	GGNNCC	8 cut(s)	191, 192, 735, 969, 1010, 2279, 2947, 2948
BspMAI	CTGCAG	2 cut(s)	2125, 2446
BspPI	GGATC	5 cut(s)	1003, 1016, 1213, 1560, 2106
BspQI	GCTCTTC	2 cut(s)	467, 1159
BspT107I	GGYRCC	1 cut(s)	2277
BspTNI	GGTCTC	3 cut(s)	180, 2898, 3409
BsrDI	GCAATG	5 cut(s)	508, 1178, 1587, 1919, 2569
BsrI	ACTGG	3 cut(s)	1543, 2550, 2662
BssT1I	CCWWGG	7 cut(s)	610, 883, 992, 1348, 2937, 3092, 3473
Bst2UI	CCWGG	5 cut(s)	7, 269, 699, 1748, 1855
Bst6I	CTCTTC	8 cut(s)	304, 439, 448, 467, 1159, 2824, 3056, 3466
BstAPI	GCANNNNNTGC	2 cut(s)	1584, 2120
BstC8I	GCNNGC	5 cut(s)	202, 1428, 1516, 2230, 2446
BstDSI	CCRYGG	3 cut(s)	883, 992, 1348
BstENI	CCTNNNNNAGG	1 cut(s)	3096
BstFNI	CGCG	1 cut(s)	3051
BstH2I	RGCGCY	1 cut(s)	1221
BstHHI	GCGC	4 cut(s)	66, 1220, 2395, 3143
BstMAI	GTCTC	7 cut(s)	180, 225, 516, 828, 1107, 2898, 3409
BstMWI	GCNNNNNNNGC	8 cut(s)	753, 810, 824, 1307, 1427, 1575, 1584, 2120
BstNI	CCWGG	5 cut(s)	7, 269, 699, 1748, 1855
BstNSI	RCATGY	4 cut(s)	1129, 1384, 2428, 3233
BstSCI	CCNGG	6 cut(s)	5, 267, 697, 970, 1746, 1853
BstSFI	CTRYAG	6 cut(s)	345, 822, 2121, 2442, 2622, 2838
BstSLI	GKGCMC	1 cut(s)	2950
BstUI	CGCG	1 cut(s)	3051
BstV1I	GCAGC	5 cut(s)	1683, 2244, 2377, 2804, 3070
BstV2I	GAAGAC	3 cut(s)	632, 709, 2304
BstX2I	RGATCY	5 cut(s)	1008, 1313, 1399, 2098, 3467
BstXI	CCANNNNNNTGG	2 cut(s)	999, 1798
BstYI	RGATCY	5 cut(s)	1008, 1313, 1399, 2098, 3467
Bsu15I	ATCGAT	1 cut(s)	3120
BsuRI	GGCC	7 cut(s)	134, 882, 1136, 1632, 2034, 2471, 2948
BsuTUI	ATCGAT	1 cut(s)	3120
BtgI	CCRYGG	3 cut(s)	883, 992, 1348
BtgZI	GCGATG	1 cut(s)	1328
BtrI	CACGTC	1 cut(s)	1796
BtsI	GCAGTG	2 cut(s)	769, 3425
BtsIMutI	CAGTG	6 cut(s)	549, 769, 1955, 2799, 3271, 3425
Cac8I	GCNNGC	5 cut(s)	202, 1428, 1516, 2230, 2446
CciI	TCATGA	3 cut(s)	532, 544, 1446
CfoI	GCGC	4 cut(s)	66, 1220, 2395, 3143
Cfr13I	GGNCC	6 cut(s)	190, 1484, 1631, 1666, 2946, 2947
ClaI	ATCGAT	1 cut(s)	3120
CseI	GACGC	2 cut(s)	1378, 2303
Csp6I	GTAC	6 cut(s)	1229, 1378, 1494, 1708, 2422, 2755
CspCI	CAANNNNNGTGG	4 cut(s)	745, 780, 3091, 3126
CviQI	GTAC	6 cut(s)	1229, 1378, 1494, 1708, 2422, 2755
DraIII	CACNNNGTG	1 cut(s)	1600
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	2 cut(s)	132, 2032
Eam1104I	CTCTTC	8 cut(s)	304, 439, 448, 467, 1159, 2824, 3056, 3466
EarI	CTCTTC	8 cut(s)	304, 439, 448, 467, 1159, 2824, 3056, 3466
EciI	GGCGGA	1 cut(s)	802
Ecl136II	GAGCTC	2 cut(s)	845, 1152
Eco130I	CCWWGG	7 cut(s)	610, 883, 992, 1348, 2937, 3092, 3473
Eco24I	GRGCYC	5 cut(s)	206, 847, 970, 1154, 2950
Eco31I	GGTCTC	3 cut(s)	180, 2898, 3409
Eco47I	GGWCC	3 cut(s)	190, 1484, 1666
Eco47III	AGCGCT	1 cut(s)	1219
Eco53kI	GAGCTC	2 cut(s)	845, 1152
Eco57I	CTGAAG	3 cut(s)	152, 1326, 3452
Eco88I	CYCGRG	1 cut(s)	2888
EcoICRI	GAGCTC	2 cut(s)	845, 1152
EcoNI	CCTNNNNNAGG	1 cut(s)	3096
EcoO109I	RGGNCCY	2 cut(s)	190, 2946
EcoRII	CCWGG	5 cut(s)	5, 267, 697, 1746, 1853
EcoT14I	CCWWGG	7 cut(s)	610, 883, 992, 1348, 2937, 3092, 3473
EcoT22I	ATGCAT	1 cut(s)	1201
EcoT38I	GRGCYC	5 cut(s)	206, 847, 970, 1154, 2950
ErhI	CCWWGG	7 cut(s)	610, 883, 992, 1348, 2937, 3092, 3473
FalI	AAGNNNNNCTT	2 cut(s)	802, 834
FaqI	GGGAC	6 cut(s)	167, 203, 1422, 2668, 2974, 3205
FauI	CCCGC	3 cut(s)	267, 977, 3056
FauNDI	CATATG	2 cut(s)	108, 2826
FbaI	TGATCA	3 cut(s)	55, 1321, 2413
Fnu4HI	GCNGC	6 cut(s)	1570, 1697, 2233, 2391, 2793, 3084
FriOI	GRGCYC	5 cut(s)	206, 847, 970, 1154, 2950
Fsp4HI	GCNGC	6 cut(s)	1570, 1697, 2233, 2391, 2793, 3084
FspI	TGCGCA	1 cut(s)	65
GlaI	GCGC	4 cut(s)	65, 1219, 2394, 3142
GluI	GCNGC	6 cut(s)	1570, 1697, 2233, 2391, 2793, 3084
GsaI	CCCAGC	3 cut(s)	1696, 2610, 3031
GsuI	CTGGAG	2 cut(s)	360, 1777
HaeII	RGCGCY	1 cut(s)	1221
HaeIII	GGCC	7 cut(s)	134, 882, 1136, 1632, 2034, 2471, 2948
HapII	CCGG	4 cut(s)	737, 972, 1203, 2541
HgaI	GACGC	2 cut(s)	1378, 2303
HhaI	GCGC	4 cut(s)	66, 1220, 2395, 3143
Hin6I	GCGC	4 cut(s)	64, 1218, 2393, 3141
HinP1I	GCGC	4 cut(s)	64, 1218, 2393, 3141
HincII	GTYRAC	2 cut(s)	2376, 2674
HindII	GTYRAC	2 cut(s)	2376, 2674
HindIII	AAGCTT	4 cut(s)	2319, 3305, 3386, 3434
HpaI	GTTAAC	1 cut(s)	2376
HpaII	CCGG	4 cut(s)	737, 972, 1203, 2541
HphI	GGTGA	4 cut(s)	56, 266, 1103, 1331
Hpy166II	GTNNAC	6 cut(s)	422, 590, 767, 1666, 2376, 2674
Hpy8I	GTNNAC	6 cut(s)	422, 590, 767, 1666, 2376, 2674
Hpy99I	CGWCG	1 cut(s)	3384
HpyCH4IV	ACGT	3 cut(s)	1505, 1795, 3394
HpyF10VI	GCNNNNNNNGC	8 cut(s)	753, 810, 824, 1307, 1427, 1575, 1584, 2120
HpySE526I	ACGT	3 cut(s)	1505, 1795, 3394
HspAI	GCGC	4 cut(s)	64, 1218, 2393, 3141
KflI	GGGWCCC	1 cut(s)	190
Kpn2I	TCCGGA	1 cut(s)	1202
Ksp22I	TGATCA	3 cut(s)	55, 1321, 2413
KspAI	GTTAAC	1 cut(s)	2376
LguI	GCTCTTC	2 cut(s)	467, 1159
Lsp1109I	GCAGC	5 cut(s)	1683, 2244, 2377, 2804, 3070
MaeII	ACGT	3 cut(s)	1505, 1795, 3394
MaeIII	GTNAC	6 cut(s)	44, 141, 708, 958, 2193, 3273
MfeI	CAATTG	4 cut(s)	641, 757, 2351, 2691
MflI	RGATCY	5 cut(s)	1008, 1313, 1399, 2098, 3467
MhlI	GDGCHC	9 cut(s)	206, 847, 970, 1105, 1154, 1516, 1789, 2860, 2950
MlsI	TGGCCA	1 cut(s)	2034
MluNI	TGGCCA	1 cut(s)	2034
MlyI	GAGTC	4 cut(s)	518, 622, 2002, 3202
MmeI	TCCRAC	3 cut(s)	708, 2425, 2688
Mox20I	TGGCCA	1 cut(s)	2034
Mph1103I	ATGCAT	1 cut(s)	1201
MroI	TCCGGA	1 cut(s)	1202
MroXI	GAANNNNTTC	1 cut(s)	3388
MscI	TGGCCA	1 cut(s)	2034
MseI	TTAA	6 cut(s)	539, 1083, 2133, 2375, 2474, 2532
MslI	CAYNNNNRTG	2 cut(s)	1130, 1347
Msp20I	TGGCCA	1 cut(s)	2034
MspA1I	CMGCKG	3 cut(s)	1696, 2390, 2843
MspI	CCGG	4 cut(s)	737, 972, 1203, 2541
MspR9I	CCNGG	6 cut(s)	7, 269, 699, 972, 1748, 1855
MunI	CAATTG	4 cut(s)	641, 757, 2351, 2691
Mva1269I	GAATGC	2 cut(s)	90, 747
MvaI	CCWGG	5 cut(s)	7, 269, 699, 1748, 1855
MvnI	CGCG	1 cut(s)	3051
MwoI	GCNNNNNNNGC	8 cut(s)	753, 810, 824, 1307, 1427, 1575, 1584, 2120
NciI	CCSGG	1 cut(s)	972
NcoI	CCATGG	3 cut(s)	883, 992, 1348
NdeI	CATATG	2 cut(s)	108, 2826
NlaIV	GGNNCC	8 cut(s)	191, 192, 735, 969, 1010, 2279, 2947, 2948
NmeAIII	GCCGAG	1 cut(s)	1198
NmuCI	GTSAC	6 cut(s)	44, 141, 708, 958, 2193, 3273
NsbI	TGCGCA	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	1201
NspI	RCATGY	4 cut(s)	1129, 1384, 2428, 3233
PagI	TCATGA	3 cut(s)	532, 544, 1446
PciI	ACATGT	2 cut(s)	2424, 3229
PciSI	GCTCTTC	2 cut(s)	467, 1159
PctI	GAATGC	2 cut(s)	90, 747
PdmI	GAANNNNTTC	1 cut(s)	3388
PfeI	GAWTC	8 cut(s)	25, 461, 569, 988, 1073, 2040, 3134, 3332
PflMI	CCANNNNNTGG	1 cut(s)	1549
PfoI	TCCNGGA	1 cut(s)	970
PkrI	GCNGC	6 cut(s)	1571, 1698, 2234, 2392, 2794, 3085
PleI	GAGTC	4 cut(s)	517, 622, 2002, 3201
PpsI	GAGTC	4 cut(s)	517, 622, 2002, 3201
PpuMI	RGGWCCY	1 cut(s)	190
PscI	ACATGT	2 cut(s)	2424, 3229
PsiI	TTATAA	1 cut(s)	2685
Psp124BI	GAGCTC	2 cut(s)	847, 1154
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	5 cut(s)	5, 267, 697, 1746, 1853
PspFI	CCCAGC	3 cut(s)	1692, 2606, 3027
PspGI	CCWGG	5 cut(s)	5, 267, 697, 1746, 1853
PspN4I	GGNNCC	8 cut(s)	191, 192, 735, 969, 1010, 2279, 2947, 2948
PspOMI	GGGCCC	1 cut(s)	2946
PspPI	GGNCC	6 cut(s)	190, 1484, 1631, 1666, 2946, 2947
PspPPI	RGGWCCY	1 cut(s)	190
PsrI	GAACNNNNNNTAC	4 cut(s)	1700, 1732, 2481, 2513
PstI	CTGCAG	2 cut(s)	2125, 2446
PsuI	RGATCY	5 cut(s)	1008, 1313, 1399, 2098, 3467
PvuII	CAGCTG	2 cut(s)	1696, 2390
RsaI	GTAC	6 cut(s)	1230, 1379, 1495, 1709, 2423, 2756
RsaNI	GTAC	6 cut(s)	1229, 1378, 1494, 1708, 2422, 2755
RseI	CAYNNNNRTG	2 cut(s)	1130, 1347
SacI	GAGCTC	2 cut(s)	847, 1154
SapI	GCTCTTC	2 cut(s)	467, 1159
SaqAI	TTAA	6 cut(s)	539, 1083, 2133, 2375, 2474, 2532
SatI	GCNGC	6 cut(s)	1570, 1697, 2233, 2391, 2793, 3084
Sau96I	GGNCC	6 cut(s)	190, 1484, 1631, 1666, 2946, 2947
SchI	GAGTC	4 cut(s)	518, 622, 2002, 3202
ScrFI	CCNGG	6 cut(s)	7, 269, 699, 972, 1748, 1855
SduI	GDGCHC	9 cut(s)	206, 847, 970, 1105, 1154, 1516, 1789, 2860, 2950
SfcI	CTRYAG	6 cut(s)	345, 822, 2121, 2442, 2622, 2838
SinI	GGWCC	3 cut(s)	190, 1484, 1666
SmiMI	CAYNNNNRTG	2 cut(s)	1130, 1347
SmlI	CTYRAG	3 cut(s)	29, 1972, 2717
SmoI	CTYRAG	3 cut(s)	29, 1972, 2717
SpeI	ACTAGT	2 cut(s)	1189, 2065
SsiI	CCGC	7 cut(s)	274, 787, 984, 1421, 1569, 2843, 3049
SspI	AATATT	1 cut(s)	1645
SstI	GAGCTC	2 cut(s)	847, 1154
StyD4I	CCNGG	6 cut(s)	5, 267, 697, 970, 1746, 1853
StyI	CCWWGG	7 cut(s)	610, 883, 992, 1348, 2937, 3092, 3473
TaiI	ACGT	3 cut(s)	1508, 1798, 3397
TatI	WGTACW	3 cut(s)	1377, 1707, 2421
TauI	GCSGC	1 cut(s)	1572
TfiI	GAWTC	8 cut(s)	25, 461, 569, 988, 1073, 2040, 3134, 3332
Tru1I	TTAA	6 cut(s)	539, 1083, 2133, 2375, 2474, 2532
Tru9I	TTAA	6 cut(s)	539, 1083, 2133, 2375, 2474, 2532
TscAI	CASTG	6 cut(s)	556, 769, 1962, 2806, 3271, 3432
TseFI	GTSAC	6 cut(s)	44, 141, 708, 958, 2193, 3273
TseI	GCWGC	5 cut(s)	1696, 2232, 2390, 2792, 3083
Tsp45I	GTSAC	6 cut(s)	44, 141, 708, 958, 2193, 3273
TspGWI	ACGGA	1 cut(s)	3160
TspRI	CASTG	6 cut(s)	556, 769, 1962, 2806, 3271, 3432
Van91I	CCANNNNNTGG	1 cut(s)	1549
VpaK11BI	GGWCC	3 cut(s)	190, 1484, 1666
XagI	CCTNNNNNAGG	1 cut(s)	3096
XapI	RAATTY	7 cut(s)	562, 1295, 1414, 1865, 2146, 2700, 2724
XbaI	TCTAGA	1 cut(s)	2011
XceI	RCATGY	4 cut(s)	1129, 1384, 2428, 3233
XmaJI	CCTAGG	1 cut(s)	3092
XmnI	GAANNNNTTC	1 cut(s)	3388
Zsp2I	ATGCAT	1 cut(s)	1201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.