Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005890

Physical Location & Seq

Genomic Coordinates Reverse (-)

36612410 .. 36619113

Gene Structure 6704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1274700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3351 bp

ATGACCAGGGCTGTTCGAGATAGGATACTCAAGGATGCGAACGGTGATATTAGTGATCATCTGCGCAACCACATTCATTTGACAAATTGCATTCACTTGAAGAACCATATGCACAAGCGAAGCCCCATATTGGCTGACAGGTCACTTATGAGGGACCTTGTCGTTCTTCAGAGGTCGCGATCCCTCAGGGACCCTTCCGCCAGTCCTCCCTCATGGCATTCGCCTTCCATTCTTGACATGCTTTCCAGAAAAGGTGAGAATGATGCCTTGGTGCGTGAGGGGAGGAGGTCAGTAGGAAGTGAGTATCGAAGGGAAGCCAGGAGGTTATCAGCAGGTTCTCCAACTTTGGCAAGTTTAGTGACACCAAAAGTTGCTCCACGCGAGGCTAATGATGGCAATGGCGGTGTGGCCGGAATCAGTGAACATGGCAGCAAGAGTGGAGTTAAGGATGGTAGGAAAATTAGGAGAGAAGAATCTAGTCAGAAGAGTAATAGGAGTAATATTTTGGGTGGCAATGAGGAACCTCCGCTAGACCAGAATGATAACGATTTGACTCATGACGCTCTTTCTGGAAATTCAGAATCCAAAAGTAGAAAAAGTAAACAAAAGGGAAAGCTCACTCAAGGTGCTCGAATGAAGACTCTCTCTGAGCAGTTGAATGATGTTAGGATGGATAGTGACGATGTAACGTCCTCTAATATCCACTTACCTGGAAGACGGTCCCAACAGGAAAGAATCGCTGAGGAACCGGAGGTCTGCGTTCAGGGATATTGCAGTGGACTAAGTAGGGTAAAAAGGCGGAGATTCCGAGGTGCAAGAAGAAGTCGTGCTTCTGTAGCTTCCAGAGACTTTGGAGCTCAGAATGGTTTATCTGTGGCTTCCAATTCATTAGCTCAAGGGTCAGCTCACCGAAAGTATCACATGGAACAGGGAGCAGATGAGTATGGTGAGCAAAATGTCACAAGGGCTCCTAGAAATGGGTGTGGGATTCCATGGAATTGGTCGAGAATCCATCATAGAGGTAAAACATTCCTCGACAATGCTGGAAGGAGCTTTTCTTGTGGTTTATCTGATTCAAGATTTAAGAAGGGTGGTCTGGCTGCCCATGGTCGAGATATTTCTGACATGCCCGTGACATCTGATAACTCGAGCATTTCTACTAAATCTGAATCTGAGGCACTGCCTTTACTAGTTGAAGCATCTGGATCACAGGCAAGCTCTGACAACGCTGGTTGGGTACATGACTATTCTGGTGAACTTGGTATTTATGCTGATAATTTATTGAAGCATGATGTCGGTTCTGACTATGCTTCTGAAGCTAGATCTGGTGATCACCGCAAATTGAGGGGGCACCGCCGGCGTAGGCACCAAAATCTGACACAAAGGTACATGCCAAGAACCTTTAGAGATCTTGTGGGACAGAATTTGGTGGCACAAGCTCTTTCAAATGCTGTCATAAAAAAGAAAGTTGGGTTGCTATACGTGTTCTATGGTCCTCATGGCACAGGGAAAACCTCATGTGCTCGCATATTTGCTAGAGCTCTAAATTGCCATTCTGTGGATGATCCCAAGCCTTGTGGCTTTTGCAATTCTTGCATCGCACATGATATGGGCAAGAGTAGAAATATAAAGGAAGTTGGGCCTGTTAGTAACTTCAACTTCGAGAGCATTGTGGACCTACTTGACAATATGATTGTTTCCCAGCTGCCATCACAGTACAGAGTGTTCATCTTTGATGATTGTGATACGTTGTCTGCTGAGTGTTGGAGTGCCATATTGAAGGCCATTGATCGAGCACCCAGACATGTGGTTTTTGTCCTTGTCTGTTCAAGTCTTGATGTTTTGTCGGATGGTTCATTGAGGGATGCTGAGATGACTCTAGAGCAACTGAGTTTGCTTGGCCAGCGAATCTCCGTTCCTCTTGTTCAGGAACTGGTCGGGCTTATCTCTGATGAGAAATTGATAGATCTTCTAGATTTAGCATTATCGGCAGACACAGTTAATACTGTGAAGAATTTGAGAATGATAATGGAAACTGGTGTTGATCCAGTAGGCTTGATGTCACAACTAGCAACGGTAATTACAGATATACTTGCTGGCAGCTATGATTATAGAAAAGAAAGGCGTAGAAGGAAGTTCTTTCGTAACCAACCATTATCGAAGGAAGACATGGAGAAATTGCGTCAAGCTTTGAAAACTTTATCTGAGGCTGAGAAACAATTGAGGATGTCAAATGACAAGTTAACATGGCTAACAGCTGCACTACTCCAACTTGCTCCTGATCAACAGTATATGCTGCCTAGTTCTTCTGGAAACGCAAGTTTCCATCACAGTCCCTTGGCCTTAAATAATGTGGGCGGAAGGAGTGCTGTCAGGAAAGATAGTGAACAAGGTGGGATGCCAAATTATGAGAAAGGTCTGCCAATTAACGTTAGAAATTCTGTAAGTTCTGGGAAAGGTATGATTTCAGATAGAAAACGTCATGCTGCTTCGGGTATGGCTTCTCAACAGACGGCCACAGGCTCTGCTGAAATGGTCAGGGTAAAGGGGAAGCAAATCCATGGCAAAAGCCATAAAGGAATTGAAGAAATTTGGTTGGAGGTGCTTGAGAAAATTCCGTATAATCGAATTAAAGAATTTTTGTACCAAGAAGGGAAGCTGACCTCAGTCAGTTTTGGTGCAGCTCCCACCGCGCAGTTGATGTTCTCTTCGCAAATGACTAAATCTACCGCTGAGAAGTTCAGAACGCAGATTTTGCAGGCATTTGAGATTGTTCTACGGTCTCCCCTGACAATTGAAATTAGATGTGAATCAAAAAGAAATAGTAAAGAATGGGCTCAGATGCCTATTATTATACCTGCTTCAAAGGATGGTTCATCCCATATTAGAGATGAAAATGCAGTCACCACCGATGCCCAGCTCGTGGCCCATGATACCTGTGAAATGGGGACGAGTGAAATTGTTGAAGTAGCTGCTTCTCCTAGGGAAACCAAGGGTGGTGGTCAAATGCATAACCAAAAGAAATCAACCATGGCGATAATTCCAGAAAAACAACAAAGTCAGAATCAAAGCATTGTCAGGAGCAAGGTGTCCCTTGCACATGTAATTCAGCAGTCAGAATCGCAACGCAGTGGATGGTCACAACGCAAAGCTGTTTCTATTGCTGAAAAGCTCGAACAAGATAATTTGAGACTGGAATCTCGTTCGAGAAGTTTGCTTTGCTGGAAAGCATCTAGAGGAACTCGTCGAAGGCTTTCGCGGTTGAAGATACGGGCACGAAGACCGCATTCGTTACTGAAGCTTGTGTCCTGCGGAAAGTGTCTGTCTTCAAGGTCTCCAAGGGTAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

1117

Amino Acids

123.77

Weight (kDa)

9.73

Isoelectric Point (pI)

56.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol3_delta2	PF13177	474 - 612	2.9e-19	DNA polymerase III, delta subunit
DNA_pol3_gamma3	PF12169	640 - 760	2.7e-06	DNA polymerase III subunits gamma and tau domain III
DnaA_N-like_STI	PF23007	855 - 936	2.1e-27	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18820
fragaria_vesca	FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230 FvH4_3g07230
malus_domestica	MD00G1008200.v1.1 MD10G1274700.v1.1
prunus_persica	Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1 Prupe.4G067700_v2.0.a1
pyrus_communis	pycom05g27350 pycom10g22920
rosa_chinensis	RchiOBHm_Chr5g0011921
rosa_laevigata	RLG00000031869
rosa_multiflora	Rmu_sc0001475.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064670
rosa_rugosa	Rorug04G0460000 Rorug04G0460100
rosa_samantha	Rh5AG091500 Rh5BG087300 Rh5CG101200 Rh5DG087900
rosa_wichuraiana	Rw5G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	65
Acc36I	ACCTGC	2 cut(s)	323, 2866
AccB1I	GGYRCC	2 cut(s)	1350, 1365
AccB7I	CCANNNNNTGG	2 cut(s)	1558, 2923
AccII	CGCG	4 cut(s)	178, 381, 2693, 3259
AclI	AACGTT	1 cut(s)	2430
AclWI	GGATC	4 cut(s)	174, 1213, 1559, 2039
AcoI	YGGCCR	3 cut(s)	408, 1900, 2514
AcsI	RAATTY	7 cut(s)	574, 1423, 2014, 2437, 2589, 2613, 2636
AcuI	CTGAAG	3 cut(s)	152, 1335, 3317
AfaI	GTAC	4 cut(s)	1239, 1388, 1718, 2645
AfiI	CCNNNNNNNGG	4 cut(s)	130, 977, 1558, 2923
AflIII	ACRYGT	3 cut(s)	1482, 1804, 3100
AhlI	ACTAGT	1 cut(s)	1189
AjnI	CCWGG	3 cut(s)	5, 317, 709
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
Alw21I	GWGCWC	5 cut(s)	631, 859, 1525, 1543, 1798
Alw26I	GTCTC	4 cut(s)	840, 2787, 3184, 3339
AlwI	GGATC	4 cut(s)	174, 1213, 1559, 2039
AlwNI	CAGNNNCTG	2 cut(s)	1933, 2525
Ama87I	CYCGRG	1 cut(s)	1147
AoxI	GGCC	7 cut(s)	408, 1640, 1782, 1900, 2340, 2514, 2925
ApeKI	GCWGC	9 cut(s)	429, 1100, 1705, 2100, 2258, 2296, 2486, 2681, 2972
ApoI	RAATTY	7 cut(s)	574, 1423, 2014, 2437, 2589, 2613, 2636
Asp700I	GAANNNNTTC	1 cut(s)	3253
AspA2I	CCTAGG	1 cut(s)	2981
AspLEI	GCGC	2 cut(s)	66, 2695
AspS9I	GGNCC	7 cut(s)	154, 190, 720, 1493, 1640, 1675, 2926
AsuHPI	GGTGA	8 cut(s)	56, 266, 899, 959, 1265, 1325, 1340, 2896
AvaI	CYCGRG	1 cut(s)	1147
AvaII	GGWCC	5 cut(s)	154, 190, 720, 1493, 1675
AvrII	CCTAGG	1 cut(s)	2981
AxyI	CCTNAGG	1 cut(s)	185
BaeGI	GKGCMC	2 cut(s)	1353, 3277
BalI	TGGCCA	1 cut(s)	1902
BanI	GGYRCC	2 cut(s)	1350, 1365
BanII	GRGCYC	4 cut(s)	859, 970, 1543, 2839
BauI	CACGAG	1 cut(s)	2921
BbsI	GAAGAC	5 cut(s)	644, 721, 2172, 3286, 3318
Bbv12I	GWGCWC	5 cut(s)	631, 859, 1525, 1543, 1798
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	9 cut(s)	441, 1087, 1692, 2112, 2245, 2283, 2473, 2693, 2959
BccI	CCATC	9 cut(s)	386, 443, 664, 1020, 1717, 1844, 2334, 2864, 3129
BceAI	ACGGC	1 cut(s)	2529
BcgI	CGANNNNNNTGC	2 cut(s)	3196, 3230
BciT130I	CCWGG	3 cut(s)	7, 319, 711
BciVI	GTATCC	1 cut(s)	18
BclI	TGATCA	3 cut(s)	55, 1330, 2281
BcoDI	GTCTC	4 cut(s)	840, 2787, 3184, 3339
BcuI	ACTAGT	1 cut(s)	1189
BfmI	CTRYAG	1 cut(s)	834
BfuAI	ACCTGC	2 cut(s)	323, 2866
BfuI	GTATCC	1 cut(s)	18
BglII	AGATCT	3 cut(s)	1322, 1408, 1966
BisI	GCNGC	9 cut(s)	430, 1101, 1706, 2101, 2259, 2297, 2487, 2682, 2973
BlnI	CCTAGG	1 cut(s)	2981
BlsI	GCNGC	9 cut(s)	431, 1102, 1707, 2102, 2260, 2298, 2488, 2683, 2974
Bme1390I	CCNGG	3 cut(s)	7, 319, 711
Bme18I	GGWCC	5 cut(s)	154, 190, 720, 1493, 1675
BmeT110I	CYCGRG	1 cut(s)	1147
BmgT120I	GGNCC	7 cut(s)	154, 190, 720, 1493, 1640, 1675, 2926
BmiI	GGNNCC	9 cut(s)	155, 191, 192, 522, 722, 747, 969, 1352, 1367
BmrFI	CCNGG	3 cut(s)	7, 319, 711
BmsI	GCATC	9 cut(s)	25, 253, 1208, 1605, 1855, 2388, 2832, 2902, 3239
BoxI	GACNNNNGTC	1 cut(s)	2666
BpiI	GAAGAC	5 cut(s)	644, 721, 2172, 3286, 3318
Bpu10I	CCTNAGC	1 cut(s)	741
BpuEI	CTTGAG	4 cut(s)	14, 606, 879, 2627
BsaAI	YACGTR	1 cut(s)	1483
BsaBI	GATNNNNATC	1 cut(s)	2809
BsaI	GGTCTC	2 cut(s)	2787, 3339
BsaWI	WCCGGW	1 cut(s)	748
BsaXI	ACNNNNNCTCC	2 cut(s)	952, 982
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 977, 1558, 2923
Bse118I	RCCGGY	1 cut(s)	1356
Bse1I	ACTGG	5 cut(s)	201, 1938, 2041, 2048, 3198
Bse21I	CCTNAGG	1 cut(s)	185
Bse3DI	GCAATG	2 cut(s)	403, 520
Bse8I	GATNNNNATC	1 cut(s)	2809
BseBI	CCWGG	3 cut(s)	7, 319, 711
BseJI	GATNNNNATC	1 cut(s)	2809
BseLI	CCNNNNNNNGG	4 cut(s)	130, 977, 1558, 2923
BseMI	GCAATG	2 cut(s)	403, 520
BseNI	ACTGG	5 cut(s)	201, 1938, 2041, 2048, 3198
BseRI	GAGGAG	1 cut(s)	298
BseSI	GKGCMC	2 cut(s)	1353, 3277
BseXI	GCAGC	9 cut(s)	441, 1087, 1692, 2112, 2245, 2283, 2473, 2693, 2959
BseYI	CCCAGC	2 cut(s)	1701, 2916
BsgI	GTGCAG	2 cut(s)	2244, 2700
Bsh1236I	CGCG	4 cut(s)	178, 381, 2693, 3259
BshFI	GGCC	7 cut(s)	410, 1642, 1784, 1902, 2342, 2516, 2927
BshNI	GGYRCC	2 cut(s)	1350, 1365
BsiHKAI	GWGCWC	5 cut(s)	631, 859, 1525, 1543, 1798
BsiHKCI	CYCGRG	1 cut(s)	1147
BsiSI	CCGG	3 cut(s)	411, 749, 1357
BslFI	GGGAC	7 cut(s)	167, 203, 706, 1431, 2319, 2962, 3076
BslI	CCNNNNNNNGG	4 cut(s)	130, 977, 1558, 2923
BsmAI	GTCTC	4 cut(s)	840, 2787, 3184, 3339
BsmFI	GGGAC	7 cut(s)	167, 203, 706, 1431, 2319, 2962, 3076
BsmI	GAATGC	3 cut(s)	90, 217, 3286
BsnI	GGCC	7 cut(s)	410, 1642, 1784, 1902, 2342, 2516, 2927
Bso31I	GGTCTC	2 cut(s)	2787, 3339
BsoBI	CYCGRG	1 cut(s)	1147
Bsp1286I	GDGCHC	9 cut(s)	631, 859, 970, 1353, 1525, 1543, 1798, 2839, 3277
Bsp19I	CCATGG	4 cut(s)	992, 1105, 2560, 3030
Bsp68I	TCGCGA	1 cut(s)	178
BspANI	GGCC	7 cut(s)	410, 1642, 1784, 1902, 2342, 2516, 2927
BspFNI	CGCG	4 cut(s)	178, 381, 2693, 3259
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	9 cut(s)	155, 191, 192, 522, 722, 747, 969, 1352, 1367
BspMI	ACCTGC	2 cut(s)	323, 2866
BspPI	GGATC	4 cut(s)	174, 1213, 1559, 2039
BspT107I	GGYRCC	2 cut(s)	1350, 1365
BspTNI	GGTCTC	2 cut(s)	2787, 3339
BsrDI	GCAATG	2 cut(s)	403, 520
BsrFI	RCCGGY	1 cut(s)	1356
BsrI	ACTGG	5 cut(s)	201, 1938, 2041, 2048, 3198
BssAI	RCCGGY	1 cut(s)	1356
BssSI	CACGAG	1 cut(s)	2921
BssT1I	CCWWGG	9 cut(s)	267, 992, 1105, 2337, 2560, 2981, 2991, 3030, 3338
Bst2BI	CACGAG	1 cut(s)	2921
Bst2UI	CCWGG	3 cut(s)	7, 319, 711
Bst4CI	ACNGT	9 cut(s)	44, 720, 1716, 1999, 2008, 2077, 2289, 2333, 2781
Bst6I	CTCTTC	2 cut(s)	479, 2713
BstAPI	GCANNNNNTGC	2 cut(s)	1593, 2755
BstBAI	YACGTR	1 cut(s)	1483
BstC8I	GCNNGC	6 cut(s)	1216, 1358, 1525, 1904, 2098, 2760
BstDSI	CCRYGG	4 cut(s)	992, 1105, 2560, 3030
BstFNI	CGCG	4 cut(s)	178, 381, 2693, 3259
BstHHI	GCGC	2 cut(s)	66, 2695
BstMAI	GTCTC	4 cut(s)	840, 2787, 3184, 3339
BstMWI	GCNNNNNNNGC	8 cut(s)	836, 1316, 1357, 1593, 1903, 1988, 2690, 2755
BstNI	CCWGG	3 cut(s)	7, 319, 711
BstNSI	RCATGY	5 cut(s)	241, 1129, 1393, 1808, 3104
BstPAI	GACNNNNGTC	1 cut(s)	2666
BstSCI	CCNGG	3 cut(s)	5, 317, 709
BstSFI	CTRYAG	1 cut(s)	834
BstSLI	GKGCMC	2 cut(s)	1353, 3277
BstUI	CGCG	4 cut(s)	178, 381, 2693, 3259
BstV1I	GCAGC	9 cut(s)	441, 1087, 1692, 2112, 2245, 2283, 2473, 2693, 2959
BstV2I	GAAGAC	5 cut(s)	644, 721, 2172, 3286, 3318
BstX2I	RGATCY	3 cut(s)	1322, 1408, 1966
BstXI	CCANNNNNNTGG	3 cut(s)	710, 999, 1807
BstYI	RGATCY	3 cut(s)	1322, 1408, 1966
Bsu36I	CCTNAGG	1 cut(s)	185
BsuI	GTATCC	1 cut(s)	18
BsuRI	GGCC	7 cut(s)	410, 1642, 1784, 1902, 2342, 2516, 2927
BtgI	CCRYGG	4 cut(s)	992, 1105, 2560, 3030
BtgZI	GCGATG	1 cut(s)	1582
BtsI	GCAGTG	3 cut(s)	781, 1178, 3136
BtsIMutI	CAGTG	4 cut(s)	424, 781, 1178, 3136
BtuMI	TCGCGA	1 cut(s)	178
BveI	ACCTGC	2 cut(s)	323, 2866
Cac8I	GCNNGC	6 cut(s)	1216, 1358, 1525, 1904, 2098, 2760
CaiI	CAGNNNCTG	2 cut(s)	1933, 2525
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	2 cut(s)	66, 2695
Cfr10I	RCCGGY	1 cut(s)	1356
Cfr13I	GGNCC	7 cut(s)	154, 190, 720, 1493, 1640, 1675, 2926
CseI	GACGC	2 cut(s)	569, 2171
Csp6I	GTAC	4 cut(s)	1238, 1387, 1717, 2644
CspCI	CAANNNNNGTGG	4 cut(s)	1558, 1593, 2980, 3015
CviQI	GTAC	4 cut(s)	1238, 1387, 1717, 2644
EaeI	YGGCCR	3 cut(s)	408, 1900, 2514
Eam1104I	CTCTTC	2 cut(s)	479, 2713
EarI	CTCTTC	2 cut(s)	479, 2713
EciI	GGCGGA	3 cut(s)	187, 814, 2373
Ecl136II	GAGCTC	2 cut(s)	857, 1541
Eco130I	CCWWGG	9 cut(s)	267, 992, 1105, 2337, 2560, 2981, 2991, 3030, 3338
Eco24I	GRGCYC	4 cut(s)	859, 970, 1543, 2839
Eco31I	GGTCTC	2 cut(s)	2787, 3339
Eco47I	GGWCC	5 cut(s)	154, 190, 720, 1493, 1675
Eco53kI	GAGCTC	2 cut(s)	857, 1541
Eco57I	CTGAAG	3 cut(s)	152, 1335, 3317
Eco81I	CCTNAGG	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	1147
EcoICRI	GAGCTC	2 cut(s)	857, 1541
EcoO109I	RGGNCCY	2 cut(s)	154, 190
EcoRII	CCWGG	3 cut(s)	5, 317, 709
EcoT14I	CCWWGG	9 cut(s)	267, 992, 1105, 2337, 2560, 2981, 2991, 3030, 3338
EcoT22I	ATGCAT	1 cut(s)	3012
EcoT38I	GRGCYC	4 cut(s)	859, 970, 1543, 2839
ErhI	CCWWGG	9 cut(s)	267, 992, 1105, 2337, 2560, 2981, 2991, 3030, 3338
FalI	AAGNNNNNCTT	2 cut(s)	814, 846
FaqI	GGGAC	7 cut(s)	167, 203, 706, 1431, 2319, 2962, 3076
FauNDI	CATATG	1 cut(s)	108
FbaI	TGATCA	3 cut(s)	55, 1330, 2281
Fnu4HI	GCNGC	9 cut(s)	430, 1101, 1706, 2101, 2259, 2297, 2487, 2682, 2973
FriOI	GRGCYC	4 cut(s)	859, 970, 1543, 2839
Fsp4HI	GCNGC	9 cut(s)	430, 1101, 1706, 2101, 2259, 2297, 2487, 2682, 2973
FspI	TGCGCA	1 cut(s)	65
GlaI	GCGC	2 cut(s)	65, 2694
GluI	GCNGC	9 cut(s)	430, 1101, 1706, 2101, 2259, 2297, 2487, 2682, 2973
GsaI	CCCAGC	2 cut(s)	1705, 2920
HaeIII	GGCC	7 cut(s)	410, 1642, 1784, 1902, 2342, 2516, 2927
HapII	CCGG	3 cut(s)	411, 749, 1357
HgaI	GACGC	2 cut(s)	569, 2171
HhaI	GCGC	2 cut(s)	66, 2695
Hin6I	GCGC	2 cut(s)	64, 2693
HinP1I	GCGC	2 cut(s)	64, 2693
HincII	GTYRAC	1 cut(s)	2244
HindII	GTYRAC	1 cut(s)	2244
HindIII	AAGCTT	2 cut(s)	2187, 3299
HpaI	GTTAAC	1 cut(s)	2244
HpaII	CCGG	3 cut(s)	411, 749, 1357
HphI	GGTGA	8 cut(s)	56, 266, 899, 959, 1265, 1325, 1340, 2896
Hpy166II	GTNNAC	7 cut(s)	422, 602, 779, 1256, 1675, 2244, 2387
Hpy8I	GTNNAC	7 cut(s)	422, 602, 779, 1256, 1675, 2244, 2387
Hpy99I	CGWCG	1 cut(s)	3249
HpyCH4III	ACNGT	9 cut(s)	44, 720, 1716, 1999, 2008, 2077, 2289, 2333, 2781
HpyCH4IV	ACGT	5 cut(s)	689, 1482, 1748, 2430, 2479
HpyF10VI	GCNNNNNNNGC	8 cut(s)	836, 1316, 1357, 1593, 1903, 1988, 2690, 2755
HpySE526I	ACGT	5 cut(s)	689, 1482, 1748, 2430, 2479
HspAI	GCGC	2 cut(s)	64, 2693
KflI	GGGWCCC	1 cut(s)	190
KroI	GCCGGC	1 cut(s)	1356
KroNI	GCCGGC	1 cut(s)	1358
Ksp22I	TGATCA	3 cut(s)	55, 1330, 2281
KspAI	GTTAAC	1 cut(s)	2244
LmnI	GCTCC	8 cut(s)	379, 854, 932, 973, 1050, 2281, 2689, 3081
Lsp1109I	GCAGC	9 cut(s)	441, 1087, 1692, 2112, 2245, 2283, 2473, 2693, 2959
LweI	GCATC	9 cut(s)	25, 253, 1208, 1605, 1855, 2388, 2832, 2902, 3239
MaeII	ACGT	5 cut(s)	689, 1482, 1748, 2430, 2479
MfeI	CAATTG	2 cut(s)	2219, 2793
MflI	RGATCY	3 cut(s)	1322, 1408, 1966
MhlI	GDGCHC	9 cut(s)	631, 859, 970, 1353, 1525, 1543, 1798, 2839, 3277
MlsI	TGGCCA	1 cut(s)	1902
MluNI	TGGCCA	1 cut(s)	1902
MlyI	GAGTC	3 cut(s)	547, 634, 1870
MmeI	TCCRAC	5 cut(s)	365, 1745, 1827, 2293, 2577
Mox20I	TGGCCA	1 cut(s)	1902
Mph1103I	ATGCAT	1 cut(s)	3012
MreI	CGCCGGCG	1 cut(s)	1356
MroNI	GCCGGC	1 cut(s)	1356
MroXI	GAANNNNTTC	1 cut(s)	3253
MscI	TGGCCA	1 cut(s)	1902
MseI	TTAA	7 cut(s)	444, 1083, 2001, 2243, 2345, 2427, 2631
MslI	CAYNNNNRTG	1 cut(s)	1130
Msp20I	TGGCCA	1 cut(s)	1902
MspA1I	CMGCKG	3 cut(s)	1705, 2258, 2732
MspI	CCGG	3 cut(s)	411, 749, 1357
MspR9I	CCNGG	3 cut(s)	7, 319, 711
MunI	CAATTG	2 cut(s)	2219, 2793
Mva1269I	GAATGC	3 cut(s)	90, 217, 3286
MvaI	CCWGG	3 cut(s)	7, 319, 711
MvnI	CGCG	4 cut(s)	178, 381, 2693, 3259
MwoI	GCNNNNNNNGC	8 cut(s)	836, 1316, 1357, 1593, 1903, 1988, 2690, 2755
NaeI	GCCGGC	1 cut(s)	1358
NcoI	CCATGG	4 cut(s)	992, 1105, 2560, 3030
NdeI	CATATG	1 cut(s)	108
NgoMIV	GCCGGC	1 cut(s)	1356
NlaIV	GGNNCC	9 cut(s)	155, 191, 192, 522, 722, 747, 969, 1352, 1367
NmuCI	GTSAC	8 cut(s)	141, 358, 677, 958, 1132, 2061, 2902, 3138
NruI	TCGCGA	1 cut(s)	178
NsbI	TGCGCA	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	3012
NspI	RCATGY	5 cut(s)	241, 1129, 1393, 1808, 3104
PaeR7I	CTCGAG	1 cut(s)	1147
PagI	TCATGA	1 cut(s)	556
PciI	ACATGT	2 cut(s)	1804, 3100
PctI	GAATGC	3 cut(s)	90, 217, 3286
PdiI	GCCGGC	1 cut(s)	1358
PdmI	GAANNNNTTC	1 cut(s)	3253
PflFI	GACNNNGTC	1 cut(s)	158
PflMI	CCANNNNNTGG	2 cut(s)	1558, 2923
PkrI	GCNGC	9 cut(s)	431, 1102, 1707, 2102, 2260, 2298, 2488, 2683, 2974
PleI	GAGTC	3 cut(s)	547, 634, 1870
PpsI	GAGTC	3 cut(s)	547, 634, 1870
Ppu21I	YACGTR	1 cut(s)	1483
PpuMI	RGGWCCY	2 cut(s)	154, 190
PscI	ACATGT	2 cut(s)	1804, 3100
PshAI	GACNNNNGTC	1 cut(s)	2666
Psp124BI	GAGCTC	2 cut(s)	859, 1543
Psp1406I	AACGTT	1 cut(s)	2430
Psp5II	RGGWCCY	2 cut(s)	154, 190
Psp6I	CCWGG	3 cut(s)	5, 317, 709
PspFI	CCCAGC	2 cut(s)	1701, 2916
PspGI	CCWGG	3 cut(s)	5, 317, 709
PspN4I	GGNNCC	9 cut(s)	155, 191, 192, 522, 722, 747, 969, 1352, 1367
PspPI	GGNCC	7 cut(s)	154, 190, 720, 1493, 1640, 1675, 2926
PspPPI	RGGWCCY	2 cut(s)	154, 190
PspXI	VCTCGAGB	1 cut(s)	1147
PsrI	GAACNNNNNNTAC	2 cut(s)	1709, 1741
PstNI	CAGNNNCTG	2 cut(s)	1933, 2525
PsuI	RGATCY	3 cut(s)	1322, 1408, 1966
PsyI	GACNNNGTC	1 cut(s)	158
PvuII	CAGCTG	2 cut(s)	1705, 2258
RruI	TCGCGA	1 cut(s)	178
RsaI	GTAC	4 cut(s)	1239, 1388, 1718, 2645
RsaNI	GTAC	4 cut(s)	1238, 1387, 1717, 2644
RseI	CAYNNNNRTG	1 cut(s)	1130
SacI	GAGCTC	2 cut(s)	859, 1543
SaqAI	TTAA	7 cut(s)	444, 1083, 2001, 2243, 2345, 2427, 2631
SatI	GCNGC	9 cut(s)	430, 1101, 1706, 2101, 2259, 2297, 2487, 2682, 2973
Sau96I	GGNCC	7 cut(s)	154, 190, 720, 1493, 1640, 1675, 2926
SchI	GAGTC	3 cut(s)	547, 634, 1870
ScrFI	CCNGG	3 cut(s)	7, 319, 711
SduI	GDGCHC	9 cut(s)	631, 859, 970, 1353, 1525, 1543, 1798, 2839, 3277
SfaNI	GCATC	9 cut(s)	25, 253, 1208, 1605, 1855, 2388, 2832, 2902, 3239
SfcI	CTRYAG	1 cut(s)	834
Sfr274I	CTCGAG	1 cut(s)	1147
SgrAI	CRCCGGYG	1 cut(s)	1356
SinI	GGWCC	5 cut(s)	154, 190, 720, 1493, 1675
SlaI	CTCGAG	1 cut(s)	1147
SmiMI	CAYNNNNRTG	1 cut(s)	1130
SmlI	CTYRAG	5 cut(s)	29, 621, 894, 1147, 2606
SmoI	CTYRAG	5 cut(s)	29, 621, 894, 1147, 2606
SpeI	ACTAGT	1 cut(s)	1189
SspI	AATATT	1 cut(s)	502
SstI	GAGCTC	2 cut(s)	859, 1543
StyD4I	CCNGG	3 cut(s)	5, 317, 709
StyI	CCWWGG	9 cut(s)	267, 992, 1105, 2337, 2560, 2981, 2991, 3030, 3338
TaaI	ACNGT	9 cut(s)	44, 720, 1716, 1999, 2008, 2077, 2289, 2333, 2781
TaiI	ACGT	5 cut(s)	692, 1485, 1751, 2433, 2482
TatI	WGTACW	1 cut(s)	1716
Tru1I	TTAA	7 cut(s)	444, 1083, 2001, 2243, 2345, 2427, 2631
Tru9I	TTAA	7 cut(s)	444, 1083, 2001, 2243, 2345, 2427, 2631
TscAI	CASTG	4 cut(s)	424, 781, 1185, 3136
TseFI	GTSAC	8 cut(s)	141, 358, 677, 958, 1132, 2061, 2902, 3138
TseI	GCWGC	9 cut(s)	429, 1100, 1705, 2100, 2258, 2296, 2486, 2681, 2972
Tsp45I	GTSAC	8 cut(s)	141, 358, 677, 958, 1132, 2061, 2902, 3138
TspDTI	ATGAA	7 cut(s)	65, 650, 876, 1717, 1845, 2865, 2907
TspGWI	ACGGA	2 cut(s)	1903, 2607
TspRI	CASTG	4 cut(s)	424, 781, 1185, 3136
Tth111I	GACNNNGTC	1 cut(s)	158
Van91I	CCANNNNNTGG	2 cut(s)	1558, 2923
VpaK11BI	GGWCC	5 cut(s)	154, 190, 720, 1493, 1675
XapI	RAATTY	7 cut(s)	574, 1423, 2014, 2437, 2589, 2613, 2636
XbaI	TCTAGA	3 cut(s)	1879, 1972, 3233
XceI	RCATGY	5 cut(s)	241, 1129, 1393, 1808, 3104
XhoI	CTCGAG	1 cut(s)	1147
XmaJI	CCTAGG	1 cut(s)	2981
XmnI	GAANNNNTTC	1 cut(s)	3253
Zsp2I	ATGCAT	1 cut(s)	3012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.