FvH4_3g07320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014687
Physical Location & Seq
Reverse (-)
4349425 .. 4350170
746 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07320.t1

Sequence Viewer

Length: 339 bp
ATGTCTTCCTGCTCTGAGTCTCACCAGGTCGCTTCTTCTCCTTCATCTTCTTCTCCTTCCCAACATTCGAGTCCAATGATAAAAGTAGTGCAGCTGGTTCCGAAATCGACATCGGATCGACTTCTGGAGAAGTTCTTTGACGCTACACAGTATGACTTTGATTACAATGAGCAGAGTGGATTGTGGTCTCCTCCTGTGCATCGTAGTGTGTTCATGAGCTCACAAGGTAAAATATTCACTGAACATGAAATGCATGCCAAGCTTACAACTCTAATGGCTGCTCAAGCTCGTTCTTCAACACGCCACAAACTTCGCTGCCGAGTATTTTGGTGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.66

Weight (kDa)

8.93

Isoelectric Point (pI)

89.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014687)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g07320
malus_domestica MD00G1009400.v1.1 MD05G1295500.v1.1 MD10G1275600.v1.1
prunus_persica Prupe.4G066600_v2.0.a1
pyrus_communis pycom05g27450 pycom10g23020
rosa_chinensis RchiOBHm_Chr5g0011631
rosa_laevigata RLG00000031850
rosa_multiflora Rmu_sc0009001.1_g000016
rosa_roxburghii Rroxscaffold_1G00064870
rosa_rugosa Rorug04G0458200
rosa_samantha Rh5AG089900 Rh5BG085500 Rh5CG099400 Rh5DG085300
rosa_wichuraiana Rw5G007820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 123
AgsI TTSAA 1 cut(s) 297
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 4 cut(s) 94, 219, 262, 287
AluI AGCT 4 cut(s) 94, 219, 262, 287
Alw21I GWGCWC 2 cut(s) 221, 335
Alw26I GTCTC 2 cut(s) 24, 192
AlwI GGATC 1 cut(s) 123
ApeKI GCWGC 3 cut(s) 91, 278, 315
AsuHPI GGTGA 1 cut(s) 14
BanII GRGCYC 1 cut(s) 221
Bbv12I GWGCWC 2 cut(s) 221, 335
BbvI GCAGC 3 cut(s) 103, 265, 302
BciT130I CCWGG 1 cut(s) 26
BcoDI GTCTC 2 cut(s) 24, 192
BisI GCNGC 3 cut(s) 92, 279, 316
BlsI GCNGC 3 cut(s) 93, 280, 317
Bme1390I CCNGG 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 192
BseBI CCWGG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 6
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 3 cut(s) 103, 265, 302
BsgI GTGCAG 1 cut(s) 110
BsiHKAI GWGCWC 2 cut(s) 221, 335
BsmAI GTCTC 2 cut(s) 24, 192
Bso31I GGTCTC 1 cut(s) 192
Bsp1286I GDGCHC 2 cut(s) 221, 335
Bsp143I GATC 1 cut(s) 115
BspCNI CTCAG 1 cut(s) 7
BspHI TCATGA 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 99
BspPI GGATC 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 192
BssMI GATC 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 15
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 2 cut(s) 24, 192
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 2 cut(s) 259, 284
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 24
BstV1I GCAGC 3 cut(s) 103, 265, 302
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 1 cut(s) 255
CciI TCATGA 1 cut(s) 213
CseI GACGC 1 cut(s) 149
CsiI ACCWGGT 1 cut(s) 24
CviAII CATG 3 cut(s) 214, 245, 254
CviJI RGCY 5 cut(s) 94, 219, 262, 278, 287
CviKI_1 RGCY 5 cut(s) 94, 219, 262, 278, 287
DdeI CTNAG 1 cut(s) 15
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Ecl136II GAGCTC 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 221
Eco31I GGTCTC 1 cut(s) 192
Eco53kI GAGCTC 1 cut(s) 219
EcoICRI GAGCTC 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 221
FaeI CATG 3 cut(s) 217, 248, 257
FaiI YATR 4 cut(s) 153, 215, 246, 255
FatI CATG 3 cut(s) 213, 244, 253
Fnu4HI GCNGC 3 cut(s) 92, 279, 316
FriOI GRGCYC 1 cut(s) 221
Fsp4HI GCNGC 3 cut(s) 92, 279, 316
GluI GCNGC 3 cut(s) 92, 279, 316
GsuI CTGGAG 1 cut(s) 146
HgaI GACGC 1 cut(s) 149
Hin1II CATG 3 cut(s) 217, 248, 257
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 2 cut(s) 17, 70
HphI GGTGA 1 cut(s) 14
Hpy188I TCNGA 3 cut(s) 16, 102, 115
Hpy188III TCNNGA 3 cut(s) 125, 214, 336
HpyAV CCTTC 2 cut(s) 51, 66
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4V TGCA 3 cut(s) 91, 199, 253
HpyF10VI GCNNNNNNNGC 2 cut(s) 259, 284
HpyF3I CTNAG 1 cut(s) 15
Hsp92II CATG 3 cut(s) 217, 248, 257
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 6 cut(s) 11, 22, 38, 80, 110, 207
Lsp1109I GCAGC 3 cut(s) 103, 265, 302
LweI GCATC 1 cut(s) 208
MabI ACCWGGT 1 cut(s) 24
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 4 cut(s) 27, 39, 42, 285
MhlI GDGCHC 2 cut(s) 221, 335
MlyI GAGTC 2 cut(s) 26, 79
MnlI CCTC 1 cut(s) 201
Mph1103I ATGCAT 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 94
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 259, 284
NdeII GATC 1 cut(s) 115
NlaIII CATG 3 cut(s) 217, 248, 257
NlaIV GGNNCC 1 cut(s) 99
NsiI ATGCAT 1 cut(s) 255
NspI RCATGY 1 cut(s) 257
PaeI GCATGC 1 cut(s) 257
PagI TCATGA 1 cut(s) 213
PkrI GCNGC 3 cut(s) 93, 280, 317
PleI GAGTC 2 cut(s) 25, 78
PpsI GAGTC 2 cut(s) 25, 78
Psp124BI GAGCTC 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 204
SacI GAGCTC 1 cut(s) 221
SatI GCNGC 3 cut(s) 92, 279, 316
Sau3AI GATC 1 cut(s) 115
SchI GAGTC 2 cut(s) 26, 79
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 2 cut(s) 221, 335
SetI ASST 6 cut(s) 30, 96, 221, 229, 264, 289
SexAI ACCWGGT 1 cut(s) 24
SfaNI GCATC 1 cut(s) 208
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 282
SmoI CTYRAG 1 cut(s) 282
SphI GCATGC 1 cut(s) 257
SspI AATATT 1 cut(s) 234
SstI GAGCTC 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 150
TaqI TCGA 3 cut(s) 68, 107, 118
TscAI CASTG 1 cut(s) 244
TseI GCWGC 3 cut(s) 91, 278, 315
TspDTI ATGAA 3 cut(s) 33, 202, 261
TspRI CASTG 1 cut(s) 244
XceI RCATGY 1 cut(s) 257
Zsp2I ATGCAT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.