Rh5BG085500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
7394792 .. 7396528
1737 bp
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UTR
Exon/CDS
Intron
Rh5BG085500.1

Sequence Viewer

Length: 393 bp
ATGTCTGCCTGCTCTGAGTCTCAGCAGGTATCTTCCCAACATTCAAGTCCAATGATAAGAGAAGTGCAGCTGGTTCCGAAATCGACTTCGGATCGTCTTCTCGAGAAGTTCTTTGATGCTACACAGTATGACTTTGATTATAATGAGCAGAGTGGATTGTGGTCTCCCCCTGTGCAGCGTAGTGTGTTCTTGAGTTCACAAGGTAAAATATTCACAGAACATGAAATGCATGCCAAGCTTACAACTTTAATGGCTGCTCAAGCTCGTTCTACAACACACAACAAAATTCGTTGCCGAAAAATGTTCACCCATTTGAAAGTGGCATGGGAAATTATTATATTTCACTTAAAACCTTTAAAGTCGAAAACAGAGAAGGGTAGGTATAGCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

15.01

Weight (kDa)

9.51

Isoelectric Point (pI)

64.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014687)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 141
Acc36I ACCTGC 1 cut(s) 16
AclWI GGATC 1 cut(s) 99
AcsI RAATTY 1 cut(s) 285
AgsI TTSAA 2 cut(s) 45, 316
AluBI AGCT 3 cut(s) 70, 238, 263
AluI AGCT 3 cut(s) 70, 238, 263
Alw26I GTCTC 2 cut(s) 24, 168
AlwI GGATC 1 cut(s) 99
Ama87I CYCGRG 1 cut(s) 101
ApeKI GCWGC 3 cut(s) 67, 175, 254
ApoI RAATTY 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 298
AvaI CYCGRG 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 89
BbvI GCAGC 3 cut(s) 79, 187, 241
BcoDI GTCTC 2 cut(s) 24, 168
BfuAI ACCTGC 1 cut(s) 16
BisI GCNGC 3 cut(s) 68, 176, 255
BlsI GCNGC 3 cut(s) 69, 177, 256
BmeT110I CYCGRG 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 75
BmsI GCATC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 89
BpuEI CTTGAG 2 cut(s) 211, 243
BsaI GGTCTC 1 cut(s) 168
BseMII CTCAG 2 cut(s) 6, 35
BseXI GCAGC 3 cut(s) 79, 187, 241
BsgI GTGCAG 2 cut(s) 86, 194
BsiHKCI CYCGRG 1 cut(s) 101
BsmAI GTCTC 2 cut(s) 24, 168
Bso31I GGTCTC 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 101
Bsp143I GATC 1 cut(s) 91
BspCNI CTCAG 2 cut(s) 7, 34
BspLI GGNNCC 1 cut(s) 75
BspMI ACCTGC 1 cut(s) 16
BspPI GGATC 1 cut(s) 99
BspTNI GGTCTC 1 cut(s) 168
BssMI GATC 1 cut(s) 91
Bst4CI ACNGT 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 10, 231
BstDEI CTNAG 2 cut(s) 15, 21
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 2 cut(s) 24, 168
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 2 cut(s) 235, 260
BstNSI RCATGY 1 cut(s) 233
BstV1I GCAGC 3 cut(s) 79, 187, 241
BstV2I GAAGAC 1 cut(s) 89
BveI ACCTGC 1 cut(s) 16
Cac8I GCNNGC 2 cut(s) 10, 231
CviAII CATG 3 cut(s) 221, 230, 324
CviJI RGCY 4 cut(s) 70, 238, 254, 263
CviKI_1 RGCY 4 cut(s) 70, 238, 254, 263
DdeI CTNAG 2 cut(s) 15, 21
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
DraI TTTAAA 1 cut(s) 357
Eco31I GGTCTC 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 101
EcoT22I ATGCAT 1 cut(s) 231
FaeI CATG 3 cut(s) 224, 233, 327
FaiI YATR 7 cut(s) 129, 141, 222, 231, 325, 338, 384
FatI CATG 3 cut(s) 220, 229, 323
Fnu4HI GCNGC 3 cut(s) 68, 176, 255
Fsp4HI GCNGC 3 cut(s) 68, 176, 255
GluI GCNGC 3 cut(s) 68, 176, 255
Hin1II CATG 3 cut(s) 224, 233, 327
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 1 cut(s) 17
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 2 cut(s) 197, 306
Hpy188I TCNGA 3 cut(s) 16, 78, 91
Hpy188III TCNNGA 3 cut(s) 101, 103, 190
Hpy8I GTNNAC 2 cut(s) 197, 306
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4V TGCA 3 cut(s) 67, 175, 229
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 260
HpyF3I CTNAG 2 cut(s) 15, 21
Hsp92II CATG 3 cut(s) 224, 233, 327
Kzo9I GATC 1 cut(s) 91
LpnPI CCDG 4 cut(s) 11, 22, 56, 183
Lsp1109I GCAGC 3 cut(s) 79, 187, 241
LweI GCATC 1 cut(s) 106
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 2 cut(s) 24, 89
MluCI AATT 2 cut(s) 285, 330
MlyI GAGTC 1 cut(s) 26
Mph1103I ATGCAT 1 cut(s) 231
MseI TTAA 4 cut(s) 248, 347, 356, 391
MspA1I CMGCKG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 235, 260
NdeII GATC 1 cut(s) 91
NlaIII CATG 3 cut(s) 224, 233, 327
NlaIV GGNNCC 1 cut(s) 75
NsiI ATGCAT 1 cut(s) 231
NspI RCATGY 1 cut(s) 233
PaeI GCATGC 1 cut(s) 233
PaeR7I CTCGAG 1 cut(s) 101
PkrI GCNGC 3 cut(s) 69, 177, 256
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PsiI TTATAA 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 75
PvuII CAGCTG 1 cut(s) 70
SaqAI TTAA 4 cut(s) 248, 347, 356, 391
SatI GCNGC 3 cut(s) 68, 176, 255
Sau3AI GATC 1 cut(s) 91
SchI GAGTC 1 cut(s) 26
SetI ASST 7 cut(s) 30, 72, 205, 240, 265, 355, 383
SfaNI GCATC 1 cut(s) 106
Sfr274I CTCGAG 1 cut(s) 101
SlaI CTCGAG 1 cut(s) 101
SmlI CTYRAG 3 cut(s) 101, 190, 258
SmoI CTYRAG 3 cut(s) 101, 190, 258
SphI GCATGC 1 cut(s) 233
Sse9I AATT 2 cut(s) 285, 330
SspI AATATT 1 cut(s) 210
TaaI ACNGT 1 cut(s) 126
TaqI TCGA 3 cut(s) 83, 102, 362
TasI AATT 2 cut(s) 285, 330
Tru1I TTAA 4 cut(s) 248, 347, 356, 391
Tru9I TTAA 4 cut(s) 248, 347, 356, 391
TseI GCWGC 3 cut(s) 67, 175, 254
TspDTI ATGAA 1 cut(s) 237
XapI RAATTY 1 cut(s) 285
XceI RCATGY 1 cut(s) 233
XhoI CTCGAG 1 cut(s) 101
Zsp2I ATGCAT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.