RLG00000031850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014687
Physical Location & Seq
Forward (+)
8715605 .. 8716217
613 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031850

Sequence Viewer

Length: 324 bp
ATGTCTGCCTGCTCTGAGTCTCAGCAGGTATCTTCTTCTTCCTCCCAACATTCAAGTCCAATGATAAGAGTAGTGCAGCTGGTTCCGAAATCGACTTCGGATCGTCTTCTCGAGAAGTTCTTTGATGCTACACAGTATGACTTTGATTATAATGAGCAGAGTGGATTGTGGTCTCCTCCTGTACAGCGTAGTGTGTTCTTGAGTTCACAAGGTAAAATATTCACAGAACATGAAATGCATGGCAAGCTTACAACTTTAATGGCTGCTCAAGCTCGTTCTACAACACACAACAAAATTCGTTGCCGAGCATTCTGGTGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.12

Weight (kDa)

8.56

Isoelectric Point (pI)

77.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014687)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g07320
malus_domestica MD00G1009400.v1.1 MD05G1295500.v1.1 MD10G1275600.v1.1
prunus_persica Prupe.4G066600_v2.0.a1
pyrus_communis pycom05g27450 pycom10g23020
rosa_chinensis RchiOBHm_Chr5g0011631
rosa_laevigata RLG00000031850
rosa_multiflora Rmu_sc0009001.1_g000016
rosa_roxburghii Rroxscaffold_1G00064870
rosa_rugosa Rorug04G0458200
rosa_samantha Rh5AG089900 Rh5BG085500 Rh5CG099400 Rh5DG085300
rosa_wichuraiana Rw5G007820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
Acc36I ACCTGC 1 cut(s) 16
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 294
AfaI GTAC 1 cut(s) 183
AgsI TTSAA 1 cut(s) 54
AluBI AGCT 3 cut(s) 79, 247, 272
AluI AGCT 3 cut(s) 79, 247, 272
Alw21I GWGCWC 1 cut(s) 320
Alw26I GTCTC 2 cut(s) 24, 177
AlwI GGATC 1 cut(s) 108
Ama87I CYCGRG 1 cut(s) 110
ApeKI GCWGC 2 cut(s) 76, 263
ApoI RAATTY 1 cut(s) 294
AvaI CYCGRG 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 88, 250
BcoDI GTCTC 2 cut(s) 24, 177
BfuAI ACCTGC 1 cut(s) 16
BisI GCNGC 2 cut(s) 77, 264
BlsI GCNGC 2 cut(s) 78, 265
BmeT110I CYCGRG 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 84
BmsI GCATC 1 cut(s) 115
BpiI GAAGAC 1 cut(s) 98
BpuEI CTTGAG 2 cut(s) 220, 252
BsaI GGTCTC 1 cut(s) 177
BseMII CTCAG 2 cut(s) 6, 35
BseRI GAGGAG 1 cut(s) 165
BseXI GCAGC 2 cut(s) 88, 250
BsgI GTGCAG 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 320
BsiHKCI CYCGRG 1 cut(s) 110
BsmAI GTCTC 2 cut(s) 24, 177
BsmI GAATGC 1 cut(s) 308
Bso31I GGTCTC 1 cut(s) 177
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 320
Bsp1407I TGTACA 1 cut(s) 181
Bsp143I GATC 1 cut(s) 100
BspCNI CTCAG 2 cut(s) 7, 34
BspLI GGNNCC 1 cut(s) 84
BspMI ACCTGC 1 cut(s) 16
BspPI GGATC 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 177
BsrGI TGTACA 1 cut(s) 181
BssMI GATC 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 135
BstAUI TGTACA 1 cut(s) 181
BstC8I GCNNGC 2 cut(s) 10, 245
BstDEI CTNAG 2 cut(s) 15, 21
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 2 cut(s) 24, 177
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 2 cut(s) 244, 269
BstV1I GCAGC 2 cut(s) 88, 250
BstV2I GAAGAC 1 cut(s) 98
BveI ACCTGC 1 cut(s) 16
Cac8I GCNNGC 2 cut(s) 10, 245
Csp6I GTAC 1 cut(s) 182
CviAII CATG 2 cut(s) 230, 239
CviJI RGCY 4 cut(s) 79, 247, 263, 272
CviKI_1 RGCY 4 cut(s) 79, 247, 263, 272
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 2 cut(s) 15, 21
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eco31I GGTCTC 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 110
EcoT22I ATGCAT 1 cut(s) 240
FaeI CATG 2 cut(s) 233, 242
FaiI YATR 4 cut(s) 138, 150, 231, 240
FatI CATG 2 cut(s) 229, 238
Fnu4HI GCNGC 2 cut(s) 77, 264
Fsp4HI GCNGC 2 cut(s) 77, 264
GluI GCNGC 2 cut(s) 77, 264
Hin1II CATG 2 cut(s) 233, 242
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 3 cut(s) 16, 87, 100
Hpy188III TCNNGA 4 cut(s) 110, 112, 199, 321
Hpy8I GTNNAC 1 cut(s) 206
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 76, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 244, 269
HpyF3I CTNAG 2 cut(s) 15, 21
Hsp92II CATG 2 cut(s) 233, 242
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 5 cut(s) 11, 22, 65, 192, 298
Lsp1109I GCAGC 2 cut(s) 88, 250
LweI GCATC 1 cut(s) 115
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 4 cut(s) 24, 27, 30, 98
MhlI GDGCHC 1 cut(s) 320
MluCI AATT 1 cut(s) 294
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 2 cut(s) 52, 186
Mph1103I ATGCAT 1 cut(s) 240
MseI TTAA 1 cut(s) 257
MslI CAYNNNNRTG 1 cut(s) 313
MspA1I CMGCKG 1 cut(s) 79
Mva1269I GAATGC 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 244, 269
NdeII GATC 1 cut(s) 100
NlaIII CATG 2 cut(s) 233, 242
NlaIV GGNNCC 1 cut(s) 84
NsiI ATGCAT 1 cut(s) 240
PaeR7I CTCGAG 1 cut(s) 110
PctI GAATGC 1 cut(s) 308
PkrI GCNGC 2 cut(s) 78, 265
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PsiI TTATAA 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 84
PvuII CAGCTG 1 cut(s) 79
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
RseI CAYNNNNRTG 1 cut(s) 313
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 2 cut(s) 77, 264
Sau3AI GATC 1 cut(s) 100
SchI GAGTC 1 cut(s) 26
SduI GDGCHC 1 cut(s) 320
SetI ASST 5 cut(s) 30, 81, 214, 249, 274
SfaNI GCATC 1 cut(s) 115
Sfr274I CTCGAG 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 313
SmlI CTYRAG 3 cut(s) 110, 199, 267
SmoI CTYRAG 3 cut(s) 110, 199, 267
Sse9I AATT 1 cut(s) 294
SspI AATATT 1 cut(s) 219
TaaI ACNGT 1 cut(s) 135
TaqI TCGA 2 cut(s) 92, 111
TasI AATT 1 cut(s) 294
TatI WGTACW 1 cut(s) 181
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TseI GCWGC 2 cut(s) 76, 263
TspDTI ATGAA 1 cut(s) 246
XapI RAATTY 1 cut(s) 294
XhoI CTCGAG 1 cut(s) 110
Zsp2I ATGCAT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.