Rw5G007820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0014687
Physical Location & Seq
Forward (+)
8310929 .. 8311347
419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G007820.1

Sequence Viewer

Length: 327 bp
ATGTCTGCCTGCTCTGAGTCTCAGCAGGTATCTTCTTCTTCTTCTTCCCAACATTCAAGTCCAATGATAAGAGAAGTACAGCTGGTTCCGAAATCGACTTCGGATCGTCTTCTCGAGAAGTTCTTTGATGCTACACAGTATGACTTTGATTATAATGAGCAGAGTGGATTGTGGTCTCCCCCTGTGCAGCGTAGTGTGTTCTTGAGTTCACAAGGTAAAATATTCACAGAACATGAAATGCATGCCAAGCTTACAACTTTAATGGCTGCTCAAGCTCGTTCTACAACACACAACAAAATTCGTTGCCGAGCATTCTGGTGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.25

Weight (kDa)

7.78

Isoelectric Point (pI)

79.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014687)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g07320
malus_domestica MD00G1009400.v1.1 MD05G1295500.v1.1 MD10G1275600.v1.1
prunus_persica Prupe.4G066600_v2.0.a1
pyrus_communis pycom05g27450 pycom10g23020
rosa_chinensis RchiOBHm_Chr5g0011631
rosa_laevigata RLG00000031850
rosa_multiflora Rmu_sc0009001.1_g000016
rosa_roxburghii Rroxscaffold_1G00064870
rosa_rugosa Rorug04G0458200
rosa_samantha Rh5AG089900 Rh5BG085500 Rh5CG099400 Rh5DG085300
rosa_wichuraiana Rw5G007820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 16
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 1 cut(s) 297
AfaI GTAC 1 cut(s) 78
AgsI TTSAA 1 cut(s) 57
AluBI AGCT 3 cut(s) 82, 250, 275
AluI AGCT 3 cut(s) 82, 250, 275
Alw21I GWGCWC 1 cut(s) 323
Alw26I GTCTC 2 cut(s) 24, 180
AlwI GGATC 1 cut(s) 111
Ama87I CYCGRG 1 cut(s) 113
ApeKI GCWGC 2 cut(s) 187, 266
ApoI RAATTY 1 cut(s) 297
AvaI CYCGRG 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 323
BbvI GCAGC 2 cut(s) 199, 253
BcoDI GTCTC 2 cut(s) 24, 180
BfuAI ACCTGC 1 cut(s) 16
BisI GCNGC 2 cut(s) 188, 267
BlsI GCNGC 2 cut(s) 189, 268
BmeT110I CYCGRG 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 87
BmsI GCATC 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 101
BpuEI CTTGAG 2 cut(s) 223, 255
BsaI GGTCTC 1 cut(s) 180
BseMII CTCAG 2 cut(s) 6, 35
BseXI GCAGC 2 cut(s) 199, 253
BsgI GTGCAG 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 323
BsiHKCI CYCGRG 1 cut(s) 113
BsmAI GTCTC 2 cut(s) 24, 180
BsmI GAATGC 1 cut(s) 311
Bso31I GGTCTC 1 cut(s) 180
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 1 cut(s) 103
BspCNI CTCAG 2 cut(s) 7, 34
BspLI GGNNCC 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 16
BspPI GGATC 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 180
BssMI GATC 1 cut(s) 103
Bst4CI ACNGT 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 10, 243
BstDEI CTNAG 2 cut(s) 15, 21
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 2 cut(s) 24, 180
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 2 cut(s) 247, 272
BstNSI RCATGY 1 cut(s) 245
BstV1I GCAGC 2 cut(s) 199, 253
BstV2I GAAGAC 1 cut(s) 101
BveI ACCTGC 1 cut(s) 16
Cac8I GCNNGC 2 cut(s) 10, 243
Csp6I GTAC 1 cut(s) 77
CviAII CATG 2 cut(s) 233, 242
CviJI RGCY 4 cut(s) 82, 250, 266, 275
CviKI_1 RGCY 4 cut(s) 82, 250, 266, 275
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 2 cut(s) 15, 21
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eco31I GGTCTC 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 243
FaeI CATG 2 cut(s) 236, 245
FaiI YATR 4 cut(s) 141, 153, 234, 243
FatI CATG 2 cut(s) 232, 241
Fnu4HI GCNGC 2 cut(s) 188, 267
Fsp4HI GCNGC 2 cut(s) 188, 267
GluI GCNGC 2 cut(s) 188, 267
Hin1II CATG 2 cut(s) 236, 245
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 3 cut(s) 16, 90, 103
Hpy188III TCNNGA 4 cut(s) 113, 115, 202, 324
Hpy8I GTNNAC 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 187, 241
HpyF10VI GCNNNNNNNGC 2 cut(s) 247, 272
HpyF3I CTNAG 2 cut(s) 15, 21
Hsp92II CATG 2 cut(s) 236, 245
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 5 cut(s) 11, 22, 68, 195, 301
Lsp1109I GCAGC 2 cut(s) 199, 253
LweI GCATC 1 cut(s) 118
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 6 cut(s) 24, 27, 30, 33, 36, 101
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 1 cut(s) 297
MlyI GAGTC 1 cut(s) 26
Mph1103I ATGCAT 1 cut(s) 243
MseI TTAA 1 cut(s) 260
MslI CAYNNNNRTG 1 cut(s) 316
MspA1I CMGCKG 1 cut(s) 82
Mva1269I GAATGC 1 cut(s) 311
MwoI GCNNNNNNNGC 2 cut(s) 247, 272
NdeII GATC 1 cut(s) 103
NlaIII CATG 2 cut(s) 236, 245
NlaIV GGNNCC 1 cut(s) 87
NsiI ATGCAT 1 cut(s) 243
NspI RCATGY 1 cut(s) 245
PaeI GCATGC 1 cut(s) 245
PaeR7I CTCGAG 1 cut(s) 113
PctI GAATGC 1 cut(s) 311
PkrI GCNGC 2 cut(s) 189, 268
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PsiI TTATAA 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 87
PsrI GAACNNNNNNTAC 2 cut(s) 69, 101
PvuII CAGCTG 1 cut(s) 82
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 316
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 2 cut(s) 188, 267
Sau3AI GATC 1 cut(s) 103
SchI GAGTC 1 cut(s) 26
SduI GDGCHC 1 cut(s) 323
SetI ASST 5 cut(s) 30, 84, 217, 252, 277
SfaNI GCATC 1 cut(s) 118
Sfr274I CTCGAG 1 cut(s) 113
SlaI CTCGAG 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 316
SmlI CTYRAG 3 cut(s) 113, 202, 270
SmoI CTYRAG 3 cut(s) 113, 202, 270
SphI GCATGC 1 cut(s) 245
Sse9I AATT 1 cut(s) 297
SspI AATATT 1 cut(s) 222
TaaI ACNGT 1 cut(s) 138
TaqI TCGA 2 cut(s) 95, 114
TasI AATT 1 cut(s) 297
TatI WGTACW 1 cut(s) 76
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TseI GCWGC 2 cut(s) 187, 266
TspDTI ATGAA 1 cut(s) 249
XapI RAATTY 1 cut(s) 297
XceI RCATGY 1 cut(s) 245
XhoI CTCGAG 1 cut(s) 113
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.