MD10G1275600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0014687
Physical Location & Seq
Reverse (-)
36687261 .. 36688104
844 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1275600.v1.1.491

Sequence Viewer

Length: 342 bp
ATGCCTTCTGGGACAGAGTCTGAGCTCTCTTCTCCTTCTTCTTCTTCTTATTCTTCACCTGGGTTGCCTGACACTTGTCCTCCTCCCACTTCTCCAACTGTGCAGTTGGTCCCAAAATCCACTTCCGATCGACTTCTTCAGAAGTTCTTTGATGCCGCGGAGTTCGACTTTGATTACGAGCAGAGTGGACTGTGGTCTCCTCCAGTCCGGCGGACCGTGTTCGTGAGCTCTCAAGGTAAAATATTCACTGAACAAGAAATGCTTGCCAGACTTTCAACCCTAACGGAAGCTCCTCCTGCAAGACACGATAAAGCTTGTTTTGGGGGATGCTGGTGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.39

Weight (kDa)

4.81

Isoelectric Point (pI)

94.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014687)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g07320
malus_domestica MD00G1009400.v1.1 MD05G1295500.v1.1 MD10G1275600.v1.1
prunus_persica Prupe.4G066600_v2.0.a1
pyrus_communis pycom05g27450 pycom10g23020
rosa_chinensis RchiOBHm_Chr5g0011631
rosa_laevigata RLG00000031850
rosa_multiflora Rmu_sc0009001.1_g000016
rosa_roxburghii Rroxscaffold_1G00064870
rosa_rugosa Rorug04G0458200
rosa_samantha Rh5AG089900 Rh5BG085500 Rh5CG099400 Rh5DG085300
rosa_wichuraiana Rw5G007820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 158
AciI CCGC 3 cut(s) 156, 158, 211
AcuI CTGAAG 1 cut(s) 122
AgsI TTSAA 1 cut(s) 276
AjnI CCWGG 1 cut(s) 58
AjuI GAANNNNNNNTTGG 2 cut(s) 106, 138
AluBI AGCT 4 cut(s) 25, 228, 290, 314
AluI AGCT 4 cut(s) 25, 228, 290, 314
Alw21I GWGCWC 2 cut(s) 27, 230
Alw26I GTCTC 1 cut(s) 201
AlwNI CAGNNNCTG 1 cut(s) 20
AspS9I GGNCC 2 cut(s) 109, 213
AsuHPI GGTGA 1 cut(s) 48
AvaII GGWCC 2 cut(s) 109, 213
BanII GRGCYC 2 cut(s) 27, 230
Bbv12I GWGCWC 2 cut(s) 27, 230
BciT130I CCWGG 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 201
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 60
Bme18I GGWCC 2 cut(s) 109, 213
BmgT120I GGNCC 2 cut(s) 109, 213
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 60
BmsI GCATC 2 cut(s) 142, 317
BoxI GACNNNNGTC 2 cut(s) 75, 193
BpmI CTGGAG 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 59, 156
BsaXI ACNNNNNCTCC 4 cut(s) 64, 94, 274, 304
Bse1I ACTGG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 59, 156
BseGI GGATG 1 cut(s) 332
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 3 cut(s) 72, 189, 282
BsgI GTGCAG 1 cut(s) 122
Bsh1236I CGCG 1 cut(s) 158
Bsh1285I CGRYCG 1 cut(s) 130
BsiEI CGRYCG 1 cut(s) 130
BsiHKAI GWGCWC 2 cut(s) 27, 230
BsiSI CCGG 1 cut(s) 208
BslFI GGGAC 2 cut(s) 25, 95
BsmAI GTCTC 1 cut(s) 201
BsmFI GGGAC 2 cut(s) 25, 95
Bso31I GGTCTC 1 cut(s) 201
Bsp1286I GDGCHC 2 cut(s) 27, 230
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 3 cut(s) 156, 158, 211
BspCNI CTCAG 1 cut(s) 13
BspFNI CGCG 1 cut(s) 158
BspLI GGNNCC 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 201
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 59, 156
BssMI GATC 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 3 cut(s) 100, 192, 217
Bst6I CTCTTC 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 1 cut(s) 21
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 332
BstFNI CGCG 1 cut(s) 158
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 1 cut(s) 127
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 60
BstPAI GACNNNNGTC 2 cut(s) 75, 193
BstSCI CCNGG 1 cut(s) 58
BstUI CGCG 1 cut(s) 158
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 332
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 264
CaiI CAGNNNCTG 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 109, 213
Cfr42I CCGCGG 1 cut(s) 159
CpoI CGGWCCG 1 cut(s) 213
CspI CGGWCCG 1 cut(s) 213
CviJI RGCY 4 cut(s) 25, 228, 290, 314
CviKI_1 RGCY 4 cut(s) 25, 228, 290, 314
DdeI CTNAG 1 cut(s) 21
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
EciI GGCGGA 1 cut(s) 226
Ecl136II GAGCTC 2 cut(s) 25, 228
Eco24I GRGCYC 2 cut(s) 27, 230
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 109, 213
Eco53kI GAGCTC 2 cut(s) 25, 228
Eco57I CTGAAG 1 cut(s) 122
EcoICRI GAGCTC 2 cut(s) 25, 228
EcoRII CCWGG 1 cut(s) 58
EcoT38I GRGCYC 2 cut(s) 27, 230
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 2 cut(s) 25, 95
Fnu4HI GCNGC 1 cut(s) 156
FriOI GRGCYC 2 cut(s) 27, 230
Fsp4HI GCNGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 186
HapII CCGG 1 cut(s) 208
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 1 cut(s) 17
HpaII CCGG 1 cut(s) 208
HphI GGTGA 1 cut(s) 48
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 3 cut(s) 22, 127, 141
Hpy188III TCNNGA 1 cut(s) 223
Hpy8I GTNNAC 1 cut(s) 188
HpyAV CCTTC 2 cut(s) 15, 45
HpyCH4III ACNGT 3 cut(s) 100, 192, 217
HpyCH4V TGCA 2 cut(s) 103, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 1 cut(s) 21
KspI CCGCGG 1 cut(s) 159
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 8 cut(s) 45, 72, 81, 216, 221, 280, 309, 316
LweI GCATC 2 cut(s) 142, 317
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 6 cut(s) 21, 30, 33, 36, 45, 128
MhlI GDGCHC 2 cut(s) 27, 230
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 4 cut(s) 90, 93, 210, 303
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 208
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 111
PflFI GACNNNGTC 1 cut(s) 16
PkrI GCNGC 1 cut(s) 157
Ple19I CGATCG 1 cut(s) 130
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PshAI GACNNNNGTC 2 cut(s) 75, 193
Psp124BI GAGCTC 2 cut(s) 27, 230
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 2 cut(s) 109, 213
PstNI CAGNNNCTG 1 cut(s) 20
PsyI GACNNNGTC 1 cut(s) 16
PvuI CGATCG 1 cut(s) 130
Rsr2I CGGWCCG 1 cut(s) 213
RsrII CGGWCCG 1 cut(s) 213
SacI GAGCTC 2 cut(s) 27, 230
SacII CCGCGG 1 cut(s) 159
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 2 cut(s) 109, 213
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 60
SduI GDGCHC 2 cut(s) 27, 230
SetI ASST 6 cut(s) 27, 61, 230, 238, 292, 316
SfaNI GCATC 2 cut(s) 142, 317
Sfr303I CCGCGG 1 cut(s) 159
SgrBI CCGCGG 1 cut(s) 159
SinI GGWCC 2 cut(s) 109, 213
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
SsiI CCGC 3 cut(s) 156, 158, 211
SspI AATATT 1 cut(s) 243
SstI GAGCTC 2 cut(s) 27, 230
StyD4I CCNGG 1 cut(s) 58
TaaI ACNGT 3 cut(s) 100, 192, 217
TaqI TCGA 2 cut(s) 130, 165
TauI GCSGC 1 cut(s) 158
TscAI CASTG 1 cut(s) 253
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 1 cut(s) 253
Tth111I GACNNNGTC 1 cut(s) 16
VpaK11BI GGWCC 2 cut(s) 109, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.