Prupe.4G066600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014687
Physical Location & Seq
Forward (+)
3216011 .. 3216965
955 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G066600.1

Sequence Viewer

Length: 327 bp
ATGTCTGGTTCTGAGTCTGAGGCCTCTTCTTCCTCTTCTCCTTCACCTGGATTGCCTAACAAGTGTCCTCCTCCAACTGCGCCAATGGTGCAATTGGTCCCAAAATCCACTTCTGATCGACTGCTTCAGAAATTCTTTGATGCCGCAGAGTTTGACTTTGATTATGAGCAGAGTGGATTGTGGTCTCCTCCCGTAAAGCGCACCGTGTTCTTGAGCTCACAAGGTAGAATTTTCACTGAGCAAGAAATGCTAGCTAAACTTTCAACTCTAACGGATGCTCCTACTTCAACACACAAAGCTTGCTGCAGAGCATTCCGGTGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.83

Weight (kDa)

6.55

Isoelectric Point (pI)

87.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014687)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g07320
malus_domestica MD00G1009400.v1.1 MD05G1295500.v1.1 MD10G1275600.v1.1
prunus_persica Prupe.4G066600_v2.0.a1
pyrus_communis pycom05g27450 pycom10g23020
rosa_chinensis RchiOBHm_Chr5g0011631
rosa_laevigata RLG00000031850
rosa_multiflora Rmu_sc0009001.1_g000016
rosa_roxburghii Rroxscaffold_1G00064870
rosa_rugosa Rorug04G0458200
rosa_samantha Rh5AG089900 Rh5BG085500 Rh5CG099400 Rh5DG085300
rosa_wichuraiana Rw5G007820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 144
AcsI RAATTY 2 cut(s) 131, 228
AcuI CTGAAG 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 2 cut(s) 264, 288
AjnI CCWGG 1 cut(s) 46
AjuI GAANNNNNNNTTGG 2 cut(s) 94, 126
AluBI AGCT 3 cut(s) 216, 254, 299
AluI AGCT 3 cut(s) 216, 254, 299
Alw21I GWGCWC 1 cut(s) 218
Alw26I GTCTC 1 cut(s) 189
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 303
ApoI RAATTY 2 cut(s) 131, 228
AspLEI GCGC 2 cut(s) 82, 201
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 36
AsuNHI GCTAGC 1 cut(s) 250
AvaII GGWCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 290
BciT130I CCWGG 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 1 cut(s) 304
BisI GCNGC 2 cut(s) 144, 304
BlsI GCNGC 2 cut(s) 145, 305
Bme1390I CCNGG 1 cut(s) 48
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 48
BmsI GCATC 2 cut(s) 130, 265
BmtI GCTAGC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 232
BsaI GGTCTC 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 315
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bsc4I CCNNNNNNNGG 1 cut(s) 47
BseBI CCWGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 2 cut(s) 9, 228
BseRI GAGGAG 2 cut(s) 60, 177
BseXI GCAGC 1 cut(s) 290
BshFI GGCC 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 218
BsiSI CCGG 1 cut(s) 316
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 311
BsnI GGCC 1 cut(s) 23
Bso31I GGTCTC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 1 cut(s) 144
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 3 cut(s) 4, 10, 229
BspLI GGNNCC 1 cut(s) 99
BspMAI CTGCAG 1 cut(s) 308
BspOI GCTAGC 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 189
BssMI GATC 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 2 cut(s) 31, 40
BstAPI GCANNNNNTGC 1 cut(s) 247
BstC8I GCNNGC 2 cut(s) 252, 301
BstDEI CTNAG 3 cut(s) 12, 18, 237
BstF5I GGATG 1 cut(s) 280
BstHHI GCGC 2 cut(s) 82, 201
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 2 cut(s) 88, 247
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 304
BstV1I GCAGC 1 cut(s) 290
BsuRI GGCC 1 cut(s) 23
BtsCI GGATG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 252, 301
CfoI GCGC 2 cut(s) 82, 201
Cfr13I GGNCC 1 cut(s) 97
CviJI RGCY 4 cut(s) 23, 216, 254, 299
CviKI_1 RGCY 4 cut(s) 23, 216, 254, 299
DdeI CTNAG 3 cut(s) 12, 18, 237
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eam1104I CTCTTC 2 cut(s) 31, 40
EarI CTCTTC 2 cut(s) 31, 40
Ecl136II GAGCTC 1 cut(s) 216
Eco147I AGGCCT 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 218
Eco31I GGTCTC 1 cut(s) 189
Eco47I GGWCC 1 cut(s) 97
Eco53kI GAGCTC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 218
FaiI YATR 1 cut(s) 165
FaqI GGGAC 1 cut(s) 83
Fnu4HI GCNGC 2 cut(s) 144, 304
FokI GGATG 1 cut(s) 287
FriOI GRGCYC 1 cut(s) 218
Fsp4HI GCNGC 2 cut(s) 144, 304
FspBI CTAG 1 cut(s) 251
GlaI GCGC 2 cut(s) 81, 200
GluI GCNGC 2 cut(s) 144, 304
HaeIII GGCC 1 cut(s) 23
HapII CCGG 1 cut(s) 316
HhaI GCGC 2 cut(s) 82, 201
Hin6I GCGC 2 cut(s) 80, 199
HinP1I GCGC 2 cut(s) 80, 199
HindIII AAGCTT 1 cut(s) 297
HinfI GANTC 1 cut(s) 14
HpaII CCGG 1 cut(s) 316
HphI GGTGA 1 cut(s) 36
Hpy188I TCNGA 4 cut(s) 13, 19, 115, 129
Hpy188III TCNNGA 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 51
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 2 cut(s) 91, 306
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 247
HpyF3I CTNAG 3 cut(s) 12, 18, 237
HspAI GCGC 2 cut(s) 80, 199
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 2 cut(s) 33, 60
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 2 cut(s) 130, 265
MaeI CTAG 1 cut(s) 251
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 3 cut(s) 18, 21, 27
MfeI CAATTG 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 3 cut(s) 92, 131, 228
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 6 cut(s) 13, 34, 43, 78, 81, 198
MslI CAYNNNNRTG 1 cut(s) 316
MspI CCGG 1 cut(s) 316
MspR9I CCNGG 1 cut(s) 48
MunI CAATTG 1 cut(s) 92
Mva1269I GAATGC 1 cut(s) 311
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 2 cut(s) 88, 247
NdeII GATC 1 cut(s) 115
NheI GCTAGC 1 cut(s) 250
NlaIV GGNNCC 1 cut(s) 99
PceI AGGCCT 1 cut(s) 23
PctI GAATGC 1 cut(s) 311
PkrI GCNGC 2 cut(s) 145, 305
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp124BI GAGCTC 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 99
PspPI GGNCC 1 cut(s) 97
PstI CTGCAG 1 cut(s) 308
RseI CAYNNNNRTG 1 cut(s) 316
SacI GAGCTC 1 cut(s) 218
SatI GCNGC 2 cut(s) 144, 304
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 1 cut(s) 97
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 1 cut(s) 218
SetI ASST 5 cut(s) 49, 218, 226, 256, 301
SfaNI GCATC 2 cut(s) 130, 265
SfcI CTRYAG 1 cut(s) 304
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 316
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 3 cut(s) 92, 131, 228
SseBI AGGCCT 1 cut(s) 23
SsiI CCGC 1 cut(s) 144
SspMI CTAG 1 cut(s) 251
SstI GAGCTC 1 cut(s) 218
StuI AGGCCT 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 46
TaaI ACNGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 118
TasI AATT 3 cut(s) 92, 131, 228
TauI GCSGC 1 cut(s) 146
TscAI CASTG 1 cut(s) 241
TseI GCWGC 1 cut(s) 303
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 2 cut(s) 131, 228
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.