FvH4_3g07920

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006679
Physical Location & Seq
Reverse (-)
4676139 .. 4680004
3866 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07920.t1

Sequence Viewer

Length: 789 bp
ATGGCGTTTTATAGCTTTAACTCAAACCCATCAATCGGATCGGACTACTCTACCCTTTTCAACCCGTTTGCGCATCATGGGTCGGGTGACGGTTTGAGAAACGGGTCTGTGCAGGCTCTTCCGCACTCTTTGGTGTTGGACAGTGAGAAAGGTGAGCTTGTGAAAGCTCCAGCTAGAGTGGGAAAGAAAGGTGTTTCAGAAGCTAAGGCTTTGGCGGCTTTGAAGAATCACAGTGAGGCTGAGAGGAGGAGGAGAGAGAGAATCAATGCACATCTCTCCACTCTTCGTGGACTTGTTCCCTGCACTGAAAAGATGGACAAAGCCGCATTACTTGCTGAAGTTATCCGCCAAGTCAAAGAGCTGAAAAAGGATTCCCTAGAATCCAGCAAGGGTTTTCTCATTCCCATTGATGCCGATGAAGTAAAGGTTGAACACTATGACAGTGGGGTAGGAGATGGAACCATATCTTTGAGGGCATCCATCTGCTGTGACTACCGCCCTGAGCTTCTCTCTGACCTAAAAGAGGCTCTTGATTCCCTTCACTTGAAAATGGTGAAGGCAGAAATGGCAACCCTGGGAAACCGAGTGCACAATGTATTTGTTTTGACTGGCTGCAAAGAAGGAAACAATGATGCTGAGGCATACCAACACCTTGCAAATTCCATTCACCATGCCTTGAGTTCTGTCCTCGATAAGGCCTCAGTCTCGCCTGAATACTCTCCAAGAACAACGCTGCCAAGTAAAAGACAAAGGATCTCTTACTTCGATACCTCGAGCTCATCCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

263

Amino Acids

28.59

Weight (kDa)

7.74

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 75 - 121 1.5e-10 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 72
AciI CCGC 5 cut(s) 122, 215, 324, 346, 496
AclWI GGATC 2 cut(s) 46, 761
AcsI RAATTY 1 cut(s) 658
AcuI CTGAAG 1 cut(s) 357
AfiI CCNNNNNNNGG 3 cut(s) 35, 523, 694
AgsI TTSAA 4 cut(s) 61, 223, 431, 547
AjnI CCWGG 1 cut(s) 573
AluBI AGCT 8 cut(s) 15, 157, 167, 173, 203, 361, 505, 777
AluI AGCT 8 cut(s) 15, 157, 167, 173, 203, 361, 505, 777
Alw21I GWGCWC 2 cut(s) 591, 779
Alw26I GTCTC 1 cut(s) 709
Alw44I GTGCAC 1 cut(s) 587
AlwI GGATC 2 cut(s) 46, 761
Ama87I CYCGRG 1 cut(s) 772
AoxI GGCC 1 cut(s) 696
ApaLI GTGCAC 1 cut(s) 587
ApeKI GCWGC 2 cut(s) 612, 733
ApoI RAATTY 1 cut(s) 658
AspLEI GCGC 1 cut(s) 73
AsuHPI GGTGA 4 cut(s) 98, 164, 565, 659
AvaI CYCGRG 1 cut(s) 772
BaeGI GKGCMC 1 cut(s) 591
BanII GRGCYC 1 cut(s) 779
Bbv12I GWGCWC 2 cut(s) 591, 779
BbvCI CCTCAGC 1 cut(s) 636
BbvI GCAGC 2 cut(s) 599, 720
BccI CCATC 4 cut(s) 37, 307, 449, 488
BciT130I CCWGG 1 cut(s) 575
BcoDI GTCTC 1 cut(s) 709
BfaI CTAG 2 cut(s) 174, 377
BisI GCNGC 4 cut(s) 216, 324, 613, 734
BlsI GCNGC 4 cut(s) 217, 325, 614, 735
Bme1390I CCNGG 1 cut(s) 575
BmeT110I CYCGRG 1 cut(s) 772
BmiI GGNNCC 1 cut(s) 460
BmrFI CCNGG 1 cut(s) 575
BmsI GCATC 4 cut(s) 82, 400, 485, 622
BplI GAGNNNNNCTC 2 cut(s) 494, 526
BpmI CTGGAG 1 cut(s) 153
Bpu10I CCTNAGC 3 cut(s) 204, 501, 636
BpuEI CTTGAG 1 cut(s) 697
BsaJI CCNNGG 2 cut(s) 573, 574
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 523, 694
Bse1I ACTGG 1 cut(s) 613
BseBI CCWGG 1 cut(s) 575
BseDI CCNNGG 2 cut(s) 573, 574
BseGI GGATG 2 cut(s) 476, 779
BseLI CCNNNNNNNGG 3 cut(s) 35, 523, 694
BseMII CTCAG 4 cut(s) 231, 492, 627, 714
BseNI ACTGG 1 cut(s) 613
BseRI GAGGAG 3 cut(s) 259, 262, 265
BseSI GKGCMC 1 cut(s) 591
BseXI GCAGC 2 cut(s) 599, 720
BsgI GTGCAG 2 cut(s) 131, 286
BshFI GGCC 1 cut(s) 698
BsiHKAI GWGCWC 2 cut(s) 591, 779
BsiHKCI CYCGRG 1 cut(s) 772
BslI CCNNNNNNNGG 3 cut(s) 35, 523, 694
BsmAI GTCTC 1 cut(s) 709
BsnI GGCC 1 cut(s) 698
BsoBI CYCGRG 1 cut(s) 772
Bsp1286I GDGCHC 2 cut(s) 591, 779
Bsp143I GATC 2 cut(s) 38, 753
BspACI CCGC 5 cut(s) 122, 215, 324, 346, 496
BspANI GGCC 1 cut(s) 698
BspCNI CTCAG 4 cut(s) 232, 493, 628, 713
BspHI TCATGA 1 cut(s) 785
BspLI GGNNCC 1 cut(s) 460
BspPI GGATC 2 cut(s) 46, 761
BspQI GCTCTTC 1 cut(s) 123
BsrI ACTGG 1 cut(s) 613
BssECI CCNNGG 2 cut(s) 573, 574
BssMI GATC 2 cut(s) 38, 753
Bst2UI CCWGG 1 cut(s) 575
Bst4CI ACNGT 4 cut(s) 92, 143, 233, 443
Bst6I CTCTTC 2 cut(s) 123, 288
BstAPI GCANNNNNTGC 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 5 cut(s) 204, 240, 501, 636, 700
BstENI CCTNNNNNAGG 2 cut(s) 521, 692
BstF5I GGATG 2 cut(s) 476, 779
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 2 cut(s) 41, 756
BstMAI GTCTC 1 cut(s) 709
BstMBI GATC 2 cut(s) 38, 753
BstMWI GCNNNNNNNGC 3 cut(s) 215, 332, 566
BstNI CCWGG 1 cut(s) 575
BstSCI CCNGG 1 cut(s) 573
BstSLI GKGCMC 1 cut(s) 591
BstV1I GCAGC 2 cut(s) 599, 720
BstX2I RGATCY 1 cut(s) 753
BstYI RGATCY 1 cut(s) 753
BsuRI GGCC 1 cut(s) 698
BtsCI GGATG 2 cut(s) 476, 779
BtsIMutI CAGTG 4 cut(s) 148, 238, 303, 448
Cac8I GCNNGC 1 cut(s) 114
CciI TCATGA 1 cut(s) 785
CfoI GCGC 1 cut(s) 73
CviAII CATG 3 cut(s) 77, 671, 786
DdeI CTNAG 5 cut(s) 204, 240, 501, 636, 700
DpnI GATC 2 cut(s) 40, 755
DpnII GATC 2 cut(s) 38, 753
Eam1104I CTCTTC 2 cut(s) 123, 288
EarI CTCTTC 2 cut(s) 123, 288
EciI GGCGGA 1 cut(s) 335
Ecl136II GAGCTC 1 cut(s) 777
Eco147I AGGCCT 1 cut(s) 698
Eco24I GRGCYC 1 cut(s) 779
Eco53kI GAGCTC 1 cut(s) 777
Eco57I CTGAAG 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 772
EcoICRI GAGCTC 1 cut(s) 777
EcoNI CCTNNNNNAGG 2 cut(s) 521, 692
EcoRII CCWGG 1 cut(s) 573
EcoT38I GRGCYC 1 cut(s) 779
FaeI CATG 3 cut(s) 80, 674, 789
FaiI YATR 7 cut(s) 12, 78, 438, 464, 643, 672, 787
FalI AAGNNNNNCTT 6 cut(s) 141, 173, 513, 545, 742, 774
FatI CATG 3 cut(s) 76, 670, 785
Fnu4HI GCNGC 4 cut(s) 216, 324, 613, 734
FokI GGATG 2 cut(s) 463, 766
FriOI GRGCYC 1 cut(s) 779
Fsp4HI GCNGC 4 cut(s) 216, 324, 613, 734
FspBI CTAG 2 cut(s) 174, 377
FspI TGCGCA 1 cut(s) 72
GlaI GCGC 1 cut(s) 72
GluI GCNGC 4 cut(s) 216, 324, 613, 734
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 1 cut(s) 698
HhaI GCGC 1 cut(s) 73
Hin1II CATG 3 cut(s) 80, 674, 789
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 5 cut(s) 226, 261, 371, 380, 533
HphI GGTGA 4 cut(s) 98, 164, 565, 659
Hpy166II GTNNAC 2 cut(s) 290, 589
Hpy188I TCNGA 4 cut(s) 38, 43, 199, 514
Hpy188III TCNNGA 2 cut(s) 530, 786
Hpy8I GTNNAC 2 cut(s) 290, 589
HpyAV CCTTC 3 cut(s) 548, 550, 614
HpyCH4III ACNGT 4 cut(s) 92, 143, 233, 443
HpyCH4V TGCA 6 cut(s) 112, 269, 303, 589, 615, 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 332, 566
HpyF3I CTNAG 5 cut(s) 204, 240, 501, 636, 700
Hsp92II CATG 3 cut(s) 80, 674, 789
HspAI GCGC 1 cut(s) 71
Kzo9I GATC 2 cut(s) 38, 753
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 9 cut(s) 98, 183, 313, 397, 513, 560, 587, 594, 723
Lsp1109I GCAGC 2 cut(s) 599, 720
LweI GCATC 4 cut(s) 82, 400, 485, 622
MaeI CTAG 2 cut(s) 174, 377
MaeIII GTNAC 2 cut(s) 86, 488
MalI GATC 2 cut(s) 40, 755
MboI GATC 2 cut(s) 38, 753
MboII GAAGA 3 cut(s) 110, 235, 275
MflI RGATCY 1 cut(s) 753
MhlI GDGCHC 2 cut(s) 591, 779
MluCI AATT 1 cut(s) 658
MmeI TCCRAC 1 cut(s) 117
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 784
MspR9I CCNGG 1 cut(s) 575
MvaI CCWGG 1 cut(s) 575
MwoI GCNNNNNNNGC 3 cut(s) 215, 332, 566
NdeII GATC 2 cut(s) 38, 753
NlaIII CATG 3 cut(s) 80, 674, 789
NlaIV GGNNCC 1 cut(s) 460
NmuCI GTSAC 2 cut(s) 86, 488
NsbI TGCGCA 1 cut(s) 72
PaeR7I CTCGAG 1 cut(s) 772
PagI TCATGA 1 cut(s) 785
PasI CCCWGGG 1 cut(s) 574
PceI AGGCCT 1 cut(s) 698
PciSI GCTCTTC 1 cut(s) 123
PfeI GAWTC 5 cut(s) 226, 261, 371, 380, 533
PkrI GCNGC 4 cut(s) 217, 325, 614, 735
Psp124BI GAGCTC 1 cut(s) 779
Psp6I CCWGG 1 cut(s) 573
PspGI CCWGG 1 cut(s) 573
PspN4I GGNNCC 1 cut(s) 460
PspXI VCTCGAGB 1 cut(s) 772
PsuI RGATCY 1 cut(s) 753
RseI CAYNNNNRTG 1 cut(s) 784
SacI GAGCTC 1 cut(s) 779
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 4 cut(s) 216, 324, 613, 734
Sau3AI GATC 2 cut(s) 38, 753
ScrFI CCNGG 1 cut(s) 575
SduI GDGCHC 2 cut(s) 591, 779
SfaNI GCATC 4 cut(s) 82, 400, 485, 622
Sfr274I CTCGAG 1 cut(s) 772
SlaI CTCGAG 1 cut(s) 772
SmiMI CAYNNNNRTG 1 cut(s) 784
SmlI CTYRAG 2 cut(s) 676, 772
SmoI CTYRAG 2 cut(s) 676, 772
Sse9I AATT 1 cut(s) 658
SseBI AGGCCT 1 cut(s) 698
SsiI CCGC 5 cut(s) 122, 215, 324, 346, 496
SspMI CTAG 2 cut(s) 174, 377
SstI GAGCTC 1 cut(s) 779
StuI AGGCCT 1 cut(s) 698
StyD4I CCNGG 1 cut(s) 573
TaaI ACNGT 4 cut(s) 92, 143, 233, 443
TaqI TCGA 3 cut(s) 690, 765, 773
TasI AATT 1 cut(s) 658
TauI GCSGC 2 cut(s) 218, 326
TfiI GAWTC 5 cut(s) 226, 261, 371, 380, 533
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 4 cut(s) 148, 238, 310, 448
TseFI GTSAC 2 cut(s) 86, 488
TseI GCWGC 2 cut(s) 612, 733
Tsp45I GTSAC 2 cut(s) 86, 488
TspDTI ATGAA 1 cut(s) 432
TspRI CASTG 4 cut(s) 148, 238, 310, 448
VneI GTGCAC 1 cut(s) 587
XagI CCTNNNNNAGG 2 cut(s) 521, 692
XapI RAATTY 1 cut(s) 658
XhoI CTCGAG 1 cut(s) 772
XspI CTAG 2 cut(s) 174, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.