Rh5CG090900

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006679
Physical Location & Seq
Forward (+)
7184724 .. 7187752
3029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG090900.1

Sequence Viewer

Length: 789 bp
ATGGCGTTTTATAGCTTTGACTCAAATCCCACAATCGGGTCGGACTATTCTAGCCTTTTCAACCCGTTTACGCTTCATGGGTCCGGTGGTGGTTTGACAAACGGGTCTGTGCAGCTTCTTCCACACTCTTTGGTGTTGGACAGTGAGAAAGGTGAGCTTGTTAAAGCTCCAGCTAGAGTGGGAAAGAAGGGTGTTTCAGAAGCCAAGGCTTTGGCGGCTTTGAAGAATCACAGTGAGGCTGAGAGGAGGAGGAGAGAGAGAATCAATGCACATCTCTCTACTCTTCGTGGACTTGTTCCCCGCAATGAAAAGATGGACAAAGCTGCATTACTTGCTGAAGTTATCCGCCAAGTCAAAGAACTGAAGAAGGATTCCCTAGAATCCAGCAAGGGTTTTCTCATTCCAATTGATGCTGATGAAGTAAAGGTTGAACACTATGACAGTGGGGTAGGAGATGGAACCATATCTGTGAGGGCATCCATCTGCTGTGAGTACCGCTCTGAGCTTCTCTCTGACCTAAAAGAAGCTCTTGATTCCCTTCACTTGAAAATGGTGAAGGCAGAAATGGCAACCTTGGGAAACCGAGTGCACAATGTATTTGTTTTGACAGGCTACAACAAGGGAAACAACGATGCTGAGGCATACCAACTCCTTGCAAGTTCTGTCCACCATGCCCTGAGTTCTGTCCTTGATAAGGCCTCAATCTCGCCTGAATACTCTCCAAGAACAACTCTGCCAACTAAAAGACGAAGGACCTCTTACTTCGATACCTCGAGCTCATCCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

262

Amino Acids

28.61

Weight (kDa)

8.72

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 75 - 121 1.7e-10 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 103
AccBSI CCGCTC 1 cut(s) 498
AciI CCGC 4 cut(s) 215, 301, 346, 496
AcuI CTGAAG 2 cut(s) 357, 383
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 3 cut(s) 35, 36, 694
AgsI TTSAA 4 cut(s) 61, 223, 431, 547
AluBI AGCT 9 cut(s) 15, 115, 157, 167, 173, 323, 505, 527, 777
AluI AGCT 9 cut(s) 15, 115, 157, 167, 173, 323, 505, 527, 777
Alw21I GWGCWC 2 cut(s) 591, 779
Alw44I GTGCAC 1 cut(s) 587
Ama87I CYCGRG 1 cut(s) 772
AoxI GGCC 1 cut(s) 696
ApaLI GTGCAC 1 cut(s) 587
ApeKI GCWGC 2 cut(s) 112, 323
AspS9I GGNCC 2 cut(s) 81, 753
AsuHPI GGTGA 2 cut(s) 164, 565
AvaI CYCGRG 1 cut(s) 772
AvaII GGWCC 2 cut(s) 81, 753
BaeGI GKGCMC 1 cut(s) 591
BanII GRGCYC 1 cut(s) 779
Bbv12I GWGCWC 2 cut(s) 591, 779
BbvCI CCTCAGC 1 cut(s) 636
BbvI GCAGC 2 cut(s) 124, 310
BccI CCATC 3 cut(s) 307, 449, 488
BfaI CTAG 3 cut(s) 51, 174, 377
BisI GCNGC 3 cut(s) 113, 216, 324
BlsI GCNGC 3 cut(s) 114, 217, 325
Bme18I GGWCC 2 cut(s) 81, 753
BmeT110I CYCGRG 1 cut(s) 772
BmgT120I GGNCC 2 cut(s) 81, 753
BmiI GGNNCC 2 cut(s) 82, 460
BmsI GCATC 3 cut(s) 400, 485, 622
BplI GAGNNNNNCTC 4 cut(s) 482, 514, 494, 526
BpmI CTGGAG 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 636
BsaJI CCNNGG 2 cut(s) 204, 573
BsaWI WCCGGW 1 cut(s) 83
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 36, 694
Bse3DI GCAATG 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 204, 573
BseGI GGATG 2 cut(s) 476, 779
BseLI CCNNNNNNNGG 3 cut(s) 35, 36, 694
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 4 cut(s) 231, 492, 627, 668
BseRI GAGGAG 3 cut(s) 259, 262, 265
BseSI GKGCMC 1 cut(s) 591
BseXI GCAGC 2 cut(s) 124, 310
BsgI GTGCAG 1 cut(s) 131
BshFI GGCC 1 cut(s) 698
BsiHKAI GWGCWC 2 cut(s) 591, 779
BsiHKCI CYCGRG 1 cut(s) 772
BsiSI CCGG 1 cut(s) 84
BslI CCNNNNNNNGG 3 cut(s) 35, 36, 694
BsnI GGCC 1 cut(s) 698
BsoBI CYCGRG 1 cut(s) 772
Bsp1286I GDGCHC 2 cut(s) 591, 779
BspACI CCGC 4 cut(s) 215, 301, 346, 496
BspANI GGCC 1 cut(s) 698
BspCNI CTCAG 4 cut(s) 232, 493, 628, 669
BspHI TCATGA 1 cut(s) 785
BspLI GGNNCC 2 cut(s) 82, 460
BsrBI CCGCTC 1 cut(s) 498
BsrDI GCAATG 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 204, 573
BssT1I CCWWGG 2 cut(s) 204, 573
Bst4CI ACNGT 3 cut(s) 143, 233, 443
Bst6I CTCTTC 1 cut(s) 288
BstAPI GCANNNNNTGC 1 cut(s) 332
BstDEI CTNAG 4 cut(s) 240, 501, 636, 677
BstENI CCTNNNNNAGG 1 cut(s) 692
BstF5I GGATG 2 cut(s) 476, 779
BstMWI GCNNNNNNNGC 3 cut(s) 215, 332, 566
BstSLI GKGCMC 1 cut(s) 591
BstV1I GCAGC 2 cut(s) 124, 310
BstXI CCANNNNNNTGG 1 cut(s) 211
BsuRI GGCC 1 cut(s) 698
BtsCI GGATG 2 cut(s) 476, 779
BtsIMutI CAGTG 3 cut(s) 148, 238, 448
CciI TCATGA 1 cut(s) 785
Cfr13I GGNCC 2 cut(s) 81, 753
Csp6I GTAC 1 cut(s) 493
CspCI CAANNNNNGTGG 2 cut(s) 111, 146
CviAII CATG 3 cut(s) 77, 671, 786
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 4 cut(s) 240, 501, 636, 677
DrdI GACNNNNNNGTC 1 cut(s) 103
DseDI GACNNNNNNGTC 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
EciI GGCGGA 1 cut(s) 335
Ecl136II GAGCTC 1 cut(s) 777
Eco130I CCWWGG 2 cut(s) 204, 573
Eco147I AGGCCT 1 cut(s) 698
Eco24I GRGCYC 1 cut(s) 779
Eco47I GGWCC 2 cut(s) 81, 753
Eco53kI GAGCTC 1 cut(s) 777
Eco57I CTGAAG 2 cut(s) 357, 383
Eco88I CYCGRG 1 cut(s) 772
EcoICRI GAGCTC 1 cut(s) 777
EcoNI CCTNNNNNAGG 1 cut(s) 692
EcoO109I RGGNCCY 1 cut(s) 753
EcoT14I CCWWGG 2 cut(s) 204, 573
EcoT38I GRGCYC 1 cut(s) 779
ErhI CCWWGG 2 cut(s) 204, 573
FaeI CATG 3 cut(s) 80, 674, 789
FaiI YATR 7 cut(s) 12, 78, 438, 464, 643, 672, 787
FalI AAGNNNNNCTT 6 cut(s) 141, 173, 513, 545, 742, 774
FatI CATG 3 cut(s) 76, 670, 785
FauI CCCGC 1 cut(s) 308
Fnu4HI GCNGC 3 cut(s) 113, 216, 324
FokI GGATG 2 cut(s) 463, 766
FriOI GRGCYC 1 cut(s) 779
Fsp4HI GCNGC 3 cut(s) 113, 216, 324
FspBI CTAG 3 cut(s) 51, 174, 377
GluI GCNGC 3 cut(s) 113, 216, 324
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 1 cut(s) 698
HapII CCGG 1 cut(s) 84
Hin1II CATG 3 cut(s) 80, 674, 789
HinfI GANTC 6 cut(s) 20, 226, 261, 371, 380, 533
HpaII CCGG 1 cut(s) 84
HphI GGTGA 2 cut(s) 164, 565
Hpy166II GTNNAC 4 cut(s) 69, 290, 589, 667
Hpy188I TCNGA 4 cut(s) 43, 199, 502, 514
Hpy188III TCNNGA 2 cut(s) 530, 786
Hpy8I GTNNAC 4 cut(s) 69, 290, 589, 667
HpyAV CCTTC 5 cut(s) 181, 361, 548, 550, 744
HpyCH4III ACNGT 3 cut(s) 143, 233, 443
HpyCH4V TGCA 5 cut(s) 112, 269, 326, 589, 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 332, 566
HpyF3I CTNAG 4 cut(s) 240, 501, 636, 677
Hsp92II CATG 3 cut(s) 80, 674, 789
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 6 cut(s) 97, 183, 397, 594, 689, 723
Lsp1109I GCAGC 2 cut(s) 124, 310
LweI GCATC 3 cut(s) 400, 485, 622
MaeI CTAG 3 cut(s) 51, 174, 377
MbiI CCGCTC 1 cut(s) 498
MboII GAAGA 4 cut(s) 110, 235, 275, 376
MfeI CAATTG 1 cut(s) 405
MhlI GDGCHC 2 cut(s) 591, 779
MluCI AATT 1 cut(s) 405
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 2 cut(s) 21, 117
MnlI CCTC 9 cut(s) 229, 237, 240, 243, 465, 631, 709, 766, 781
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 2 cut(s) 467, 784
MspI CCGG 1 cut(s) 84
MunI CAATTG 1 cut(s) 405
MwoI GCNNNNNNNGC 3 cut(s) 215, 332, 566
NlaIII CATG 3 cut(s) 80, 674, 789
NlaIV GGNNCC 2 cut(s) 82, 460
PaeR7I CTCGAG 1 cut(s) 772
PagI TCATGA 1 cut(s) 785
PceI AGGCCT 1 cut(s) 698
PfeI GAWTC 5 cut(s) 226, 261, 371, 380, 533
PkrI GCNGC 3 cut(s) 114, 217, 325
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PpuMI RGGWCCY 1 cut(s) 753
Psp124BI GAGCTC 1 cut(s) 779
Psp5II RGGWCCY 1 cut(s) 753
PspN4I GGNNCC 2 cut(s) 82, 460
PspPI GGNCC 2 cut(s) 81, 753
PspPPI RGGWCCY 1 cut(s) 753
PspXI VCTCGAGB 1 cut(s) 772
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
RseI CAYNNNNRTG 2 cut(s) 467, 784
SacI GAGCTC 1 cut(s) 779
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 3 cut(s) 113, 216, 324
Sau96I GGNCC 2 cut(s) 81, 753
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 2 cut(s) 591, 779
SfaNI GCATC 3 cut(s) 400, 485, 622
Sfr274I CTCGAG 1 cut(s) 772
SinI GGWCC 2 cut(s) 81, 753
SlaI CTCGAG 1 cut(s) 772
SmiMI CAYNNNNRTG 2 cut(s) 467, 784
SmlI CTYRAG 1 cut(s) 772
SmoI CTYRAG 1 cut(s) 772
Sse9I AATT 1 cut(s) 405
SseBI AGGCCT 1 cut(s) 698
SsiI CCGC 4 cut(s) 215, 301, 346, 496
SspMI CTAG 3 cut(s) 51, 174, 377
SstI GAGCTC 1 cut(s) 779
StuI AGGCCT 1 cut(s) 698
StyI CCWWGG 2 cut(s) 204, 573
TaaI ACNGT 3 cut(s) 143, 233, 443
TaqI TCGA 2 cut(s) 765, 773
TasI AATT 1 cut(s) 405
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 5 cut(s) 226, 261, 371, 380, 533
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 3 cut(s) 148, 238, 448
TseI GCWGC 2 cut(s) 112, 323
TspDTI ATGAA 3 cut(s) 65, 321, 432
TspRI CASTG 3 cut(s) 148, 238, 448
VneI GTGCAC 1 cut(s) 587
VpaK11BI GGWCC 2 cut(s) 81, 753
XagI CCTNNNNNAGG 1 cut(s) 692
XhoI CTCGAG 1 cut(s) 772
XspI CTAG 3 cut(s) 51, 174, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.