Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006103.1

Orthogroup ID

OG0006679

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2800

Gene Structure 2800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006103.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 529 bp

aatcaatgcacatctctctactcttcgtggacttgttccccgcaatgaaaagatggacaaagctgcattacttgctgaagttatccgccaagtcaaagaacttaagaaggattccctagaatccagcaagggttttctcattccaattgatgccgatgaagtaaaggttgaacactatgacagtggggtaggagatggaatcatatctgtgagggcatccatctgctgtgagtaccgctctgagcttctctctgacctaaaagaagctcttgattcccttcacttgaaaatggtgaaggcagaaatggcaaccttgggaaaccgagtgcacaatgtatttgttttgacaggctacaacaagggaaacaacaatgctgaggcataccaactcctcgcaagttctgtccaccatgccctgagttctgtccttgataaggcctcaatctcgcctgaatactctccaagaacaacactgccaactaaaagacgaaggacctcttacttcgatacctcgagctcatcctcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

175

Amino Acids

19.28

Weight (kDa)

7.95

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56770
fragaria_vesca	FvH4_3g07920
malus_domestica	MD05G1302400.v1.1 MD10G1281100.v1.1
prunus_persica	Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1
pyrus_communis	pycom05g28000 pycom10g23470
rosa_chinensis	RchiOBHm_Chr5g0010631
rosa_laevigata	RLG00000031767
rosa_multiflora	Rmu_co8416583.1_g000001 Rmu_sc0006103.1_g000001 Rmu_sc0007421.1_g000012 Rmu_sc0014635.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065740
rosa_rugosa	Rorug04G0451300 Rorug04G0451300
rosa_samantha	Rh5AG082900 Rh5BG078200 Rh5CG090900 Rh5DG078300
rosa_wichuraiana	Rw0G000690 Rw0G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	238
AciI	CCGC	3 cut(s)	41, 86, 236
AcuI	CTGAAG	1 cut(s)	97
AfaI	GTAC	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	434
AflII	CTTAAG	1 cut(s)	102
AgsI	TTSAA	2 cut(s)	171, 287
AluBI	AGCT	4 cut(s)	63, 245, 267, 517
AluI	AGCT	4 cut(s)	63, 245, 267, 517
Alw21I	GWGCWC	2 cut(s)	331, 519
Alw44I	GTGCAC	1 cut(s)	327
Ama87I	CYCGRG	1 cut(s)	512
AoxI	GGCC	1 cut(s)	436
ApaLI	GTGCAC	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	493
AsuHPI	GGTGA	1 cut(s)	305
AvaI	CYCGRG	1 cut(s)	512
AvaII	GGWCC	1 cut(s)	493
BaeGI	GKGCMC	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	519
Bbv12I	GWGCWC	2 cut(s)	331, 519
BbvCI	CCTCAGC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	3 cut(s)	47, 189, 228
BfaI	CTAG	1 cut(s)	117
BfrI	CTTAAG	1 cut(s)	102
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	493
BmeT110I	CYCGRG	1 cut(s)	512
BmgT120I	GGNCC	1 cut(s)	493
BmsI	GCATC	2 cut(s)	140, 225
BplI	GAGNNNNNCTC	4 cut(s)	222, 254, 234, 266
Bpu10I	CCTNAGC	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse3DI	GCAATG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	2 cut(s)	216, 519
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMI	GCAATG	1 cut(s)	50
BseMII	CTCAG	3 cut(s)	232, 367, 408
BseRI	GAGGAG	1 cut(s)	381
BseSI	GKGCMC	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	50
BshFI	GGCC	1 cut(s)	438
BsiHKAI	GWGCWC	2 cut(s)	331, 519
BsiHKCI	CYCGRG	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	434
BsnI	GGCC	1 cut(s)	438
BsoBI	CYCGRG	1 cut(s)	512
Bsp1286I	GDGCHC	2 cut(s)	331, 519
BspACI	CCGC	3 cut(s)	41, 86, 236
BspANI	GGCC	1 cut(s)	438
BspCNI	CTCAG	3 cut(s)	233, 368, 409
BspHI	TCATGA	1 cut(s)	525
BspTI	CTTAAG	1 cut(s)	102
BsrBI	CCGCTC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	313
BssT1I	CCWWGG	1 cut(s)	313
Bst4CI	ACNGT	1 cut(s)	183
Bst6I	CTCTTC	1 cut(s)	28
BstAFI	CTTAAG	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	72
BstDEI	CTNAG	3 cut(s)	241, 376, 417
BstENI	CCTNNNNNAGG	1 cut(s)	432
BstF5I	GGATG	2 cut(s)	216, 519
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 306
BstSLI	GKGCMC	1 cut(s)	331
BstV1I	GCAGC	1 cut(s)	50
BsuRI	GGCC	1 cut(s)	438
BtsCI	GGATG	2 cut(s)	216, 519
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	188, 471
CciI	TCATGA	1 cut(s)	525
Cfr13I	GGNCC	1 cut(s)	493
Csp6I	GTAC	1 cut(s)	233
CviAII	CATG	2 cut(s)	411, 526
CviJI	RGCY	6 cut(s)	63, 245, 267, 352, 438, 517
CviKI_1	RGCY	6 cut(s)	63, 245, 267, 352, 438, 517
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	3 cut(s)	241, 376, 417
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
EciI	GGCGGA	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	517
Eco130I	CCWWGG	1 cut(s)	313
Eco147I	AGGCCT	1 cut(s)	438
Eco24I	GRGCYC	1 cut(s)	519
Eco47I	GGWCC	1 cut(s)	493
Eco53kI	GAGCTC	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	97
Eco88I	CYCGRG	1 cut(s)	512
EcoICRI	GAGCTC	1 cut(s)	517
EcoNI	CCTNNNNNAGG	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	2 cut(s)	414, 529
FaiI	YATR	5 cut(s)	178, 204, 383, 412, 527
FalI	AAGNNNNNCTT	4 cut(s)	253, 285, 482, 514
FatI	CATG	2 cut(s)	410, 525
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	2 cut(s)	203, 506
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	438
Hin1II	CATG	2 cut(s)	414, 529
HinfI	GANTC	4 cut(s)	111, 120, 199, 273
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	3 cut(s)	30, 329, 407
Hpy188I	TCNGA	2 cut(s)	242, 254
Hpy188III	TCNNGA	2 cut(s)	270, 526
Hpy8I	GTNNAC	3 cut(s)	30, 329, 407
HpyAV	CCTTC	4 cut(s)	101, 288, 290, 484
HpyCH4III	ACNGT	1 cut(s)	183
HpyCH4V	TGCA	3 cut(s)	9, 66, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 306
HpyF3I	CTNAG	3 cut(s)	241, 376, 417
Hsp92II	CATG	2 cut(s)	414, 529
LpnPI	CCDG	4 cut(s)	137, 334, 429, 463
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	2 cut(s)	140, 225
MaeI	CTAG	1 cut(s)	117
MbiI	CCGCTC	1 cut(s)	238
MboII	GAAGA	1 cut(s)	15
MfeI	CAATTG	1 cut(s)	145
MhlI	GDGCHC	2 cut(s)	331, 519
MluCI	AATT	1 cut(s)	145
MnlI	CCTC	6 cut(s)	205, 371, 402, 449, 506, 521
MseI	TTAA	1 cut(s)	103
MslI	CAYNNNNRTG	2 cut(s)	207, 524
MspCI	CTTAAG	1 cut(s)	102
MunI	CAATTG	1 cut(s)	145
MwoI	GCNNNNNNNGC	2 cut(s)	72, 306
NlaIII	CATG	2 cut(s)	414, 529
PaeR7I	CTCGAG	1 cut(s)	512
PagI	TCATGA	1 cut(s)	525
PceI	AGGCCT	1 cut(s)	438
PfeI	GAWTC	4 cut(s)	111, 120, 199, 273
PkrI	GCNGC	1 cut(s)	65
PpuMI	RGGWCCY	1 cut(s)	493
Psp124BI	GAGCTC	1 cut(s)	519
Psp5II	RGGWCCY	1 cut(s)	493
PspPI	GGNCC	1 cut(s)	493
PspPPI	RGGWCCY	1 cut(s)	493
PspXI	VCTCGAGB	1 cut(s)	512
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
RseI	CAYNNNNRTG	2 cut(s)	207, 524
SacI	GAGCTC	1 cut(s)	519
SaqAI	TTAA	1 cut(s)	103
SatI	GCNGC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	493
SduI	GDGCHC	2 cut(s)	331, 519
SetI	ASST	9 cut(s)	65, 169, 247, 259, 269, 315, 498, 513, 519
SfaNI	GCATC	2 cut(s)	140, 225
Sfr274I	CTCGAG	1 cut(s)	512
SinI	GGWCC	1 cut(s)	493
SlaI	CTCGAG	1 cut(s)	512
SmiMI	CAYNNNNRTG	2 cut(s)	207, 524
SmlI	CTYRAG	2 cut(s)	102, 512
SmoI	CTYRAG	2 cut(s)	102, 512
Sse9I	AATT	1 cut(s)	145
SseBI	AGGCCT	1 cut(s)	438
SsiI	CCGC	3 cut(s)	41, 86, 236
SspMI	CTAG	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	519
StuI	AGGCCT	1 cut(s)	438
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	1 cut(s)	183
TaqI	TCGA	2 cut(s)	505, 513
TasI	AATT	1 cut(s)	145
TfiI	GAWTC	4 cut(s)	111, 120, 199, 273
Tru1I	TTAA	1 cut(s)	103
Tru9I	TTAA	1 cut(s)	103
TscAI	CASTG	2 cut(s)	188, 478
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	61, 172
TspRI	CASTG	2 cut(s)	188, 478
Vha464I	CTTAAG	1 cut(s)	102
VneI	GTGCAC	1 cut(s)	327
VpaK11BI	GGWCC	1 cut(s)	493
XagI	CCTNNNNNAGG	1 cut(s)	432
XhoI	CTCGAG	1 cut(s)	512
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.