Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006679

Physical Location & Seq

Genomic Coordinates Reverse (-)

25608527 .. 25611487

Gene Structure 2961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g23470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGATTATTACAGTTTTAGCTCAAAATCTTCATTTGGGTCGGATTTCTCTAGTTTGTTCGACCCTTTTAAGCATGACGTAAGTGGGCTCGGCGGGGCTTCGCGCGGCGGCGCTGCGGCGAATCTGCCTCACTCTCTTGTTTTGGACAGTGAGAAAGGCGAGCTTGTTAAGGCTCCGGCGAGAGTGGGGAAAAAAGAGGTGCCTGAGGCCAAGGCTTTGTTGGCTTTGAAGAATCACAGTGAGGCTGAAAGGAGGAGGAGAGAGCGAATCAATGCACATCTCTCTACACTTCGCGGTCTGGTGCCCTGCACTGAGAAGATGGACAAAGCCACATTACTTGCAGCAGTTATCAGCCAAGTGAAAGATCTGAAGATGGATGCCCTAGAATCCAGTAAGGGGTTTCTCATCCCAGTTGATGCCGATGAAGTGAAAATTGAACCCTATGTTGCGGCAGGGGATGGAACCATATCTGTGAAGGCATCCGTCTGCTGTGAATACCGGTCTGAGCTTCTCTCTGACCTAAGAGAAGCCCTCGACTCCCTCCACTTAAAAATGGTGAAAGCAGAAATAGCGACTTTGGGAAACCGAGTGAAAAATGTATTCGTTCTCACCAGCTCCAAACCGGGAAGCAATGATTCTGATGCTGAAGCATACGAACTTCTTGCAAGTTCGGTTCACCAGGTCCTGAGTTCCGTCCTTGATAAAGCATCGGCCTCACCAGAATACTCGCCAAGAACAACGCTGCTGAGCAAAAGGCGAAGGCTCTCTTACTTCGATAAAATCGATACCTCGAGCTCATCCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

269

Amino Acids

28.97

Weight (kDa)

7.7

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56770
fragaria_vesca	FvH4_3g07920
malus_domestica	MD05G1302400.v1.1 MD10G1281100.v1.1
prunus_persica	Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1
pyrus_communis	pycom05g28000 pycom10g23470
rosa_chinensis	RchiOBHm_Chr5g0010631
rosa_laevigata	RLG00000031767
rosa_multiflora	Rmu_co8416583.1_g000001 Rmu_sc0006103.1_g000001 Rmu_sc0007421.1_g000012 Rmu_sc0014635.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065740
rosa_rugosa	Rorug04G0451300 Rorug04G0451300
rosa_samantha	Rh5AG082900 Rh5BG078200 Rh5CG090900 Rh5DG078300
rosa_wichuraiana	Rw0G000690 Rw0G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	199, 301
AccII	CGCG	3 cut(s)	103, 105, 294
AciI	CCGC	6 cut(s)	93, 105, 108, 116, 294, 449
AcuI	CTGAAG	2 cut(s)	389, 666
AfiI	CCNNNNNNNGG	1 cut(s)	396
AgeI	ACCGGT	1 cut(s)	498
AgsI	TTSAA	2 cut(s)	229, 437
AjnI	CCWGG	1 cut(s)	678
AluBI	AGCT	5 cut(s)	21, 163, 508, 615, 795
AluI	AGCT	5 cut(s)	21, 163, 508, 615, 795
Alw21I	GWGCWC	1 cut(s)	797
AlwNI	CAGNNNCTG	1 cut(s)	685
Ama87I	CYCGRG	1 cut(s)	790
AoxI	GGCC	2 cut(s)	207, 711
ApeKI	GCWGC	3 cut(s)	113, 341, 742
AsiGI	ACCGGT	1 cut(s)	498
AspLEI	GCGC	2 cut(s)	105, 113
AspS9I	GGNCC	1 cut(s)	682
AsuC2I	CCSGG	1 cut(s)	624
AsuHPI	GGTGA	4 cut(s)	568, 601, 668, 708
AvaI	CYCGRG	1 cut(s)	790
AvaII	GGWCC	1 cut(s)	682
AxyI	CCTNAGG	1 cut(s)	204
BaeGI	GKGCMC	1 cut(s)	306
BanI	GGYRCC	2 cut(s)	199, 301
BanII	GRGCYC	2 cut(s)	90, 797
BauI	CACGAG	1 cut(s)	802
Bbv12I	GWGCWC	1 cut(s)	797
BbvI	GCAGC	3 cut(s)	100, 353, 729
BccI	CCATC	3 cut(s)	313, 367, 452
BcgI	CGANNNNNNTGC	2 cut(s)	644, 678
BciT130I	CCWGG	1 cut(s)	680
BcnI	CCSGG	1 cut(s)	624
BfaI	CTAG	2 cut(s)	51, 383
BfoI	RGCGCY	1 cut(s)	114
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	7 cut(s)	106, 109, 114, 117, 342, 450, 743
BlpI	GCTNAGC	1 cut(s)	746
BlsI	GCNGC	7 cut(s)	107, 110, 115, 118, 343, 451, 744
Bme1390I	CCNGG	2 cut(s)	624, 680
Bme18I	GGWCC	1 cut(s)	682
BmeT110I	CYCGRG	1 cut(s)	790
BmgT120I	GGNCC	1 cut(s)	682
BmiI	GGNNCC	4 cut(s)	174, 201, 303, 463
BmrFI	CCNGG	2 cut(s)	624, 680
BmrI	ACTGGG	1 cut(s)	404
BmsI	GCATC	5 cut(s)	367, 406, 488, 631, 716
BmuI	ACTGGG	1 cut(s)	404
BplI	GAGNNNNNCTC	4 cut(s)	497, 529, 516, 548
Bpu1102I	GCTNAGC	1 cut(s)	746
BpuMI	CCSGG	1 cut(s)	624
Bsa29I	ATCGAT	1 cut(s)	783
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	498
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse118I	RCCGGY	1 cut(s)	498
Bse1I	ACTGG	2 cut(s)	390, 410
Bse21I	CCTNAGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	637
BseBI	CCWGG	1 cut(s)	680
BseCI	ATCGAT	1 cut(s)	783
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	5 cut(s)	382, 405, 463, 479, 797
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMI	GCAATG	1 cut(s)	637
BseMII	CTCAG	5 cut(s)	195, 303, 495, 677, 737
BseNI	ACTGG	2 cut(s)	390, 410
BseRI	GAGGAG	2 cut(s)	268, 271
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	3 cut(s)	100, 353, 729
BsgI	GTGCAG	1 cut(s)	292
Bsh1236I	CGCG	3 cut(s)	103, 105, 294
BshFI	GGCC	2 cut(s)	209, 713
BshNI	GGYRCC	2 cut(s)	199, 301
BshTI	ACCGGT	1 cut(s)	498
BshVI	ATCGAT	1 cut(s)	783
BsiHKAI	GWGCWC	1 cut(s)	797
BsiHKCI	CYCGRG	1 cut(s)	790
BsiSI	CCGG	3 cut(s)	176, 499, 623
BslI	CCNNNNNNNGG	1 cut(s)	396
BsnI	GGCC	2 cut(s)	209, 713
BsoBI	CYCGRG	1 cut(s)	790
Bsp1286I	GDGCHC	3 cut(s)	90, 306, 797
Bsp143I	GATC	1 cut(s)	364
Bsp1720I	GCTNAGC	1 cut(s)	746
BspACI	CCGC	6 cut(s)	93, 105, 108, 116, 294, 449
BspANI	GGCC	2 cut(s)	209, 713
BspCNI	CTCAG	5 cut(s)	196, 304, 496, 678, 738
BspDI	ATCGAT	1 cut(s)	783
BspFNI	CGCG	3 cut(s)	103, 105, 294
BspLI	GGNNCC	4 cut(s)	174, 201, 303, 463
BspT107I	GGYRCC	2 cut(s)	199, 301
BsrDI	GCAATG	1 cut(s)	637
BsrFI	RCCGGY	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	390, 410
BssAI	RCCGGY	1 cut(s)	498
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	364
BssSI	CACGAG	1 cut(s)	802
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	802
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	3 cut(s)	14, 149, 239
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	6 cut(s)	204, 312, 504, 521, 686, 746
BstF5I	GGATG	5 cut(s)	382, 405, 463, 479, 797
BstFNI	CGCG	3 cut(s)	103, 105, 294
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	105, 113
BstKTI	GATC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 569
BstNI	CCWGG	1 cut(s)	680
BstSCI	CCNGG	2 cut(s)	622, 678
BstSLI	GKGCMC	1 cut(s)	306
BstUI	CGCG	3 cut(s)	103, 105, 294
BstV1I	GCAGC	3 cut(s)	100, 353, 729
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
Bsu15I	ATCGAT	1 cut(s)	783
Bsu36I	CCTNAGG	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	209, 713
BsuTUI	ATCGAT	1 cut(s)	783
BtsCI	GGATG	5 cut(s)	382, 405, 463, 479, 797
BtsIMutI	CAGTG	3 cut(s)	154, 244, 309
Cac8I	GCNNGC	1 cut(s)	161
CaiI	CAGNNNCTG	1 cut(s)	685
CfoI	GCGC	2 cut(s)	105, 113
Cfr10I	RCCGGY	1 cut(s)	498
Cfr13I	GGNCC	1 cut(s)	682
ClaI	ATCGAT	1 cut(s)	783
CsiI	ACCWGGT	1 cut(s)	678
CspAI	ACCGGT	1 cut(s)	498
CspCI	CAANNNNNGTGG	2 cut(s)	319, 354
CviAII	CATG	1 cut(s)	74
DdeI	CTNAG	6 cut(s)	204, 312, 504, 521, 686, 746
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
Ecl136II	GAGCTC	1 cut(s)	795
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	2 cut(s)	90, 797
Eco47I	GGWCC	1 cut(s)	682
Eco53kI	GAGCTC	1 cut(s)	795
Eco57I	CTGAAG	2 cut(s)	389, 666
Eco81I	CCTNAGG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	790
EcoICRI	GAGCTC	1 cut(s)	795
EcoO109I	RGGNCCY	1 cut(s)	682
EcoRII	CCWGG	1 cut(s)	678
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	2 cut(s)	90, 797
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	1 cut(s)	77
FaiI	YATR	4 cut(s)	75, 444, 467, 652
FalI	AAGNNNNNCTT	4 cut(s)	147, 179, 751, 783
FatI	CATG	1 cut(s)	73
FauI	CCCGC	1 cut(s)	86
Fnu4HI	GCNGC	7 cut(s)	106, 109, 114, 117, 342, 450, 743
FokI	GGATG	5 cut(s)	389, 392, 466, 470, 784
FriOI	GRGCYC	2 cut(s)	90, 797
Fsp4HI	GCNGC	7 cut(s)	106, 109, 114, 117, 342, 450, 743
FspBI	CTAG	2 cut(s)	51, 383
GlaI	GCGC	2 cut(s)	104, 112
GluI	GCNGC	7 cut(s)	106, 109, 114, 117, 342, 450, 743
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	209, 713
HapII	CCGG	3 cut(s)	176, 499, 623
HhaI	GCGC	2 cut(s)	105, 113
Hin1II	CATG	1 cut(s)	77
Hin6I	GCGC	2 cut(s)	103, 111
HinP1I	GCGC	2 cut(s)	103, 111
HinfI	GANTC	6 cut(s)	121, 232, 267, 386, 536, 635
HpaII	CCGG	3 cut(s)	176, 499, 623
HphI	GGTGA	4 cut(s)	568, 601, 668, 708
Hpy166II	GTNNAC	1 cut(s)	676
Hpy188I	TCNGA	5 cut(s)	43, 369, 505, 517, 640
Hpy188III	TCNNGA	2 cut(s)	685, 804
Hpy8I	GTNNAC	1 cut(s)	676
HpyAV	CCTTC	2 cut(s)	469, 753
HpyCH4III	ACNGT	3 cut(s)	14, 149, 239
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	4 cut(s)	275, 309, 341, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 569
HpyF3I	CTNAG	6 cut(s)	204, 312, 504, 521, 686, 746
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	77
HspAI	GCGC	2 cut(s)	103, 111
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	2 cut(s)	178, 620
Lsp1109I	GCAGC	3 cut(s)	100, 353, 729
LweI	GCATC	5 cut(s)	367, 406, 488, 631, 716
MabI	ACCWGGT	1 cut(s)	678
MaeI	CTAG	2 cut(s)	51, 383
MaeII	ACGT	1 cut(s)	78
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	4 cut(s)	21, 241, 328, 382
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	3 cut(s)	90, 306, 797
MluCI	AATT	1 cut(s)	432
MlyI	GAGTC	1 cut(s)	530
MmeI	TCCRAC	1 cut(s)	21
MseI	TTAA	3 cut(s)	69, 168, 548
MslI	CAYNNNNRTG	2 cut(s)	470, 802
MspI	CCGG	3 cut(s)	176, 499, 623
MspR9I	CCNGG	2 cut(s)	624, 680
MvaI	CCWGG	1 cut(s)	680
MvnI	CGCG	3 cut(s)	103, 105, 294
MwoI	GCNNNNNNNGC	2 cut(s)	221, 569
NciI	CCSGG	1 cut(s)	624
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	4 cut(s)	174, 201, 303, 463
NmeAIII	GCCGAG	1 cut(s)	69
PaeR7I	CTCGAG	1 cut(s)	790
PcsI	WCGNNNNNNNCGW	1 cut(s)	780
PfeI	GAWTC	5 cut(s)	121, 232, 267, 386, 635
PinAI	ACCGGT	1 cut(s)	498
PkrI	GCNGC	7 cut(s)	107, 110, 115, 118, 343, 451, 744
PleI	GAGTC	1 cut(s)	530
PpsI	GAGTC	1 cut(s)	530
PpuMI	RGGWCCY	1 cut(s)	682
Psp124BI	GAGCTC	1 cut(s)	797
Psp5II	RGGWCCY	1 cut(s)	682
Psp6I	CCWGG	1 cut(s)	678
PspGI	CCWGG	1 cut(s)	678
PspN4I	GGNNCC	4 cut(s)	174, 201, 303, 463
PspPI	GGNCC	1 cut(s)	682
PspPPI	RGGWCCY	1 cut(s)	682
PspXI	VCTCGAGB	1 cut(s)	790
PstNI	CAGNNNCTG	1 cut(s)	685
PsuI	RGATCY	1 cut(s)	364
RseI	CAYNNNNRTG	2 cut(s)	470, 802
SacI	GAGCTC	1 cut(s)	797
SaqAI	TTAA	3 cut(s)	69, 168, 548
SatI	GCNGC	7 cut(s)	106, 109, 114, 117, 342, 450, 743
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	1 cut(s)	682
SchI	GAGTC	1 cut(s)	530
ScrFI	CCNGG	2 cut(s)	624, 680
SduI	GDGCHC	3 cut(s)	90, 306, 797
SexAI	ACCWGGT	1 cut(s)	678
SfaNI	GCATC	5 cut(s)	367, 406, 488, 631, 716
Sfr274I	CTCGAG	1 cut(s)	790
SinI	GGWCC	1 cut(s)	682
SlaI	CTCGAG	1 cut(s)	790
SmiMI	CAYNNNNRTG	2 cut(s)	470, 802
SmlI	CTYRAG	1 cut(s)	790
SmoI	CTYRAG	1 cut(s)	790
Sse9I	AATT	1 cut(s)	432
SsiI	CCGC	6 cut(s)	93, 105, 108, 116, 294, 449
SspMI	CTAG	2 cut(s)	51, 383
SstI	GAGCTC	1 cut(s)	797
StyD4I	CCNGG	2 cut(s)	622, 678
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	3 cut(s)	14, 149, 239
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	5 cut(s)	60, 534, 774, 783, 791
TasI	AATT	1 cut(s)	432
TauI	GCSGC	4 cut(s)	108, 111, 119, 452
TfiI	GAWTC	5 cut(s)	121, 232, 267, 386, 635
Tru1I	TTAA	3 cut(s)	69, 168, 548
Tru9I	TTAA	3 cut(s)	69, 168, 548
TscAI	CASTG	3 cut(s)	154, 244, 316
TseI	GCWGC	3 cut(s)	113, 341, 742
TspDTI	ATGAA	2 cut(s)	21, 438
TspGWI	ACGGA	2 cut(s)	472, 682
TspRI	CASTG	3 cut(s)	154, 244, 316
VpaK11BI	GGWCC	1 cut(s)	682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XhoI	CTCGAG	1 cut(s)	790
XspI	CTAG	2 cut(s)	51, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.