Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006679

Physical Location & Seq

Genomic Coordinates Forward (+)

2859321 .. 2862920

Gene Structure 3600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G060000.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCTTTTTACAGTTTTAACTCCAACTCTTCATTTAGGTCTGAATACTCGAGCCTCTTCGACACTTTTACGCATGGCTCAAGTGGGTTTGGTGGGGCTCTGCGAGGAGGCGGGTCTGTTTTGCCTCACTCTCTGGTTTTGGATAGTGAGAAAGGTGAGCTTATTAAGGCTCCAGCGAGAGTGGGAAAGAAAGGGGTATCAGAGGCAAAGGCCTTGGCGGCTTTGAAGAATCACAGTGAGGCTGAGAGGAGGAGAAGAGAGAGAATTAATGCACATCTCTCTACGCTTCGTGGTCTCGTGCCCTGCACTGAAAAGATGGACAAAGCCGCATTACTTGCTACAGTTATCAGCCAAGTGAAAGAACTGAAGAAGGATGCCCTAGAATCTAGTAAGGGATTTCTCATTCCCGTTGATGCTGATGAAGTGCAAGTTGAACCCTATGACACTGGGGCAGGGGATGGAACCATATCTGTGAGAGCATCCGTCTGCTGTGAATACCGGTCTGAGCTTCTTTCTGACCTAAGAGAAGCTCTTGATTCCCTTCACTTGAAAATGGTGAAGGCAGATATAGCAACCTTGGGAAACCGAGTGAAAAATGTGTTTGTTTTCACCAGCTGCAAAGAGAGAAGCAATGATGCTGATGCTGATGCATTCCAACTTCTTGCAAGTTCTGTTCACCAGGCCTTGAGTTCTGTCCTTGATAAGGCTTCTGCCTCACCAGAATACTCCCCAAGAACAACGCTGCCGAGCAAAAGGCGGAGGGTCTCTTACTTCGATACCTCGAGCTCATCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

266

Amino Acids

28.66

Weight (kDa)

8.59

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56770
fragaria_vesca	FvH4_3g07920
malus_domestica	MD05G1302400.v1.1 MD10G1281100.v1.1
prunus_persica	Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1
pyrus_communis	pycom05g28000 pycom10g23470
rosa_chinensis	RchiOBHm_Chr5g0010631
rosa_laevigata	RLG00000031767
rosa_multiflora	Rmu_co8416583.1_g000001 Rmu_sc0006103.1_g000001 Rmu_sc0007421.1_g000012 Rmu_sc0014635.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065740
rosa_rugosa	Rorug04G0451300 Rorug04G0451300
rosa_samantha	Rh5AG082900 Rh5BG078200 Rh5CG090900 Rh5DG078300
rosa_wichuraiana	Rw0G000690 Rw0G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	111, 218, 327, 757
AcuI	CTGAAG	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	703
AgeI	ACCGGT	1 cut(s)	498
AgsI	TTSAA	3 cut(s)	226, 434, 550
AjnI	CCWGG	1 cut(s)	678
AluBI	AGCT	5 cut(s)	160, 508, 530, 615, 786
AluI	AGCT	5 cut(s)	160, 508, 530, 615, 786
Alw21I	GWGCWC	1 cut(s)	788
Alw26I	GTCTC	2 cut(s)	299, 769
Ama87I	CYCGRG	2 cut(s)	49, 781
AoxI	GGCC	2 cut(s)	210, 681
ApeKI	GCWGC	2 cut(s)	615, 742
AseI	ATTAAT	1 cut(s)	267
AsiGI	ACCGGT	1 cut(s)	498
AsuHPI	GGTGA	5 cut(s)	167, 568, 601, 668, 708
AvaI	CYCGRG	2 cut(s)	49, 781
BaeGI	GKGCMC	1 cut(s)	303
BanII	GRGCYC	2 cut(s)	100, 788
BauI	CACGAG	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	788
BbvI	GCAGC	2 cut(s)	602, 729
BccI	CCATC	2 cut(s)	310, 452
BciT130I	CCWGG	1 cut(s)	680
BcoDI	GTCTC	2 cut(s)	299, 769
BfaI	CTAG	2 cut(s)	380, 387
BfmI	CTRYAG	1 cut(s)	339
BglI	GCCNNNNNGGC	1 cut(s)	218
BisI	GCNGC	4 cut(s)	219, 327, 616, 743
BlsI	GCNGC	4 cut(s)	220, 328, 617, 744
Bme1390I	CCNGG	1 cut(s)	680
BmeT110I	CYCGRG	2 cut(s)	49, 781
BmiI	GGNNCC	2 cut(s)	171, 463
BmrFI	CCNGG	1 cut(s)	680
BmrI	ACTGGG	1 cut(s)	456
BmsI	GCATC	6 cut(s)	364, 403, 488, 625, 631, 637
BmuI	ACTGGG	1 cut(s)	456
BpmI	CTGGAG	1 cut(s)	156
BpuEI	CTTGAG	2 cut(s)	64, 706
BsaI	GGTCTC	2 cut(s)	299, 769
BsaJI	CCNNGG	2 cut(s)	213, 576
BsaWI	WCCGGW	1 cut(s)	498
Bsc4I	CCNNNNNNNGG	1 cut(s)	703
Bse118I	RCCGGY	1 cut(s)	498
Bse1I	ACTGG	1 cut(s)	451
Bse3DI	GCAATG	1 cut(s)	637
BseBI	CCWGG	1 cut(s)	680
BseDI	CCNNGG	2 cut(s)	213, 576
BseGI	GGATG	3 cut(s)	379, 463, 479
BseLI	CCNNNNNNNGG	1 cut(s)	703
BseMI	GCAATG	1 cut(s)	637
BseMII	CTCAG	2 cut(s)	234, 495
BseNI	ACTGG	1 cut(s)	451
BseRI	GAGGAG	3 cut(s)	120, 262, 265
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	602, 729
BsgI	GTGCAG	1 cut(s)	289
BshFI	GGCC	2 cut(s)	212, 683
BshTI	ACCGGT	1 cut(s)	498
BsiHKAI	GWGCWC	1 cut(s)	788
BsiHKCI	CYCGRG	2 cut(s)	49, 781
BsiSI	CCGG	1 cut(s)	499
BslI	CCNNNNNNNGG	1 cut(s)	703
BsmAI	GTCTC	2 cut(s)	299, 769
BsmI	GAATGC	1 cut(s)	650
BsnI	GGCC	2 cut(s)	212, 683
Bso31I	GGTCTC	2 cut(s)	299, 769
BsoBI	CYCGRG	2 cut(s)	49, 781
Bsp1286I	GDGCHC	3 cut(s)	100, 303, 788
BspACI	CCGC	4 cut(s)	111, 218, 327, 757
BspANI	GGCC	2 cut(s)	212, 683
BspCNI	CTCAG	2 cut(s)	235, 496
BspHI	TCATGA	1 cut(s)	794
BspLI	GGNNCC	2 cut(s)	171, 463
BspTNI	GGTCTC	2 cut(s)	299, 769
BsrDI	GCAATG	1 cut(s)	637
BsrFI	RCCGGY	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	451
BssAI	RCCGGY	1 cut(s)	498
BssECI	CCNNGG	2 cut(s)	213, 576
BssSI	CACGAG	1 cut(s)	296
BssT1I	CCWWGG	2 cut(s)	213, 576
Bst2BI	CACGAG	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	3 cut(s)	14, 236, 343
Bst6I	CTCTTC	3 cut(s)	34, 62, 250
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstDEI	CTNAG	3 cut(s)	243, 504, 521
BstENI	CCTNNNNNAGG	1 cut(s)	701
BstF5I	GGATG	3 cut(s)	379, 463, 479
BstMAI	GTCTC	2 cut(s)	299, 769
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 335, 569
BstNI	CCWGG	1 cut(s)	680
BstSCI	CCNGG	1 cut(s)	678
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	303
BstV1I	GCAGC	2 cut(s)	602, 729
BsuRI	GGCC	2 cut(s)	212, 683
BtsCI	GGATG	3 cut(s)	379, 463, 479
BtsIMutI	CAGTG	3 cut(s)	241, 306, 444
CciI	TCATGA	1 cut(s)	794
Cfr10I	RCCGGY	1 cut(s)	498
CspAI	ACCGGT	1 cut(s)	498
CviAII	CATG	2 cut(s)	74, 795
DdeI	CTNAG	3 cut(s)	243, 504, 521
Eam1104I	CTCTTC	3 cut(s)	34, 62, 250
EarI	CTCTTC	3 cut(s)	34, 62, 250
EciI	GGCGGA	1 cut(s)	772
Ecl136II	GAGCTC	1 cut(s)	786
Eco130I	CCWWGG	2 cut(s)	213, 576
Eco147I	AGGCCT	2 cut(s)	212, 683
Eco24I	GRGCYC	2 cut(s)	100, 788
Eco31I	GGTCTC	2 cut(s)	299, 769
Eco53kI	GAGCTC	1 cut(s)	786
Eco57I	CTGAAG	1 cut(s)	386
Eco88I	CYCGRG	2 cut(s)	49, 781
EcoICRI	GAGCTC	1 cut(s)	786
EcoNI	CCTNNNNNAGG	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	678
EcoT14I	CCWWGG	2 cut(s)	213, 576
EcoT22I	ATGCAT	1 cut(s)	652
EcoT38I	GRGCYC	2 cut(s)	100, 788
ErhI	CCWWGG	2 cut(s)	213, 576
FaeI	CATG	2 cut(s)	77, 798
FaiI	YATR	5 cut(s)	75, 441, 467, 569, 796
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FatI	CATG	2 cut(s)	73, 794
FauI	CCCGC	1 cut(s)	104
Fnu4HI	GCNGC	4 cut(s)	219, 327, 616, 743
FokI	GGATG	3 cut(s)	386, 466, 470
FriOI	GRGCYC	2 cut(s)	100, 788
Fsp4HI	GCNGC	4 cut(s)	219, 327, 616, 743
FspBI	CTAG	2 cut(s)	380, 387
GluI	GCNGC	4 cut(s)	219, 327, 616, 743
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	212, 683
HapII	CCGG	1 cut(s)	499
Hin1II	CATG	2 cut(s)	77, 798
HinfI	GANTC	3 cut(s)	229, 383, 536
HpaII	CCGG	1 cut(s)	499
HphI	GGTGA	5 cut(s)	167, 568, 601, 668, 708
Hpy166II	GTNNAC	1 cut(s)	676
Hpy188I	TCNGA	4 cut(s)	43, 202, 505, 517
Hpy188III	TCNNGA	2 cut(s)	533, 795
Hpy8I	GTNNAC	1 cut(s)	676
HpyAV	CCTTC	3 cut(s)	364, 551, 553
HpyCH4III	ACNGT	3 cut(s)	14, 236, 343
HpyCH4V	TGCA	6 cut(s)	272, 306, 427, 618, 650, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 335, 569
HpyF3I	CTNAG	3 cut(s)	243, 504, 521
Hsp92II	CATG	2 cut(s)	77, 798
LmnI	GCTCC	1 cut(s)	175
Lsp1109I	GCAGC	2 cut(s)	602, 729
LweI	GCATC	6 cut(s)	364, 403, 488, 625, 631, 637
MaeI	CTAG	2 cut(s)	380, 387
MboII	GAAGA	5 cut(s)	21, 49, 238, 267, 379
MhlI	GDGCHC	3 cut(s)	100, 303, 788
MluCI	AATT	1 cut(s)	264
MmeI	TCCRAC	2 cut(s)	48, 679
Mph1103I	ATGCAT	1 cut(s)	652
MseI	TTAA	3 cut(s)	18, 165, 267
MslI	CAYNNNNRTG	2 cut(s)	470, 793
MspA1I	CMGCKG	1 cut(s)	615
MspI	CCGG	1 cut(s)	499
MspR9I	CCNGG	1 cut(s)	680
Mva1269I	GAATGC	1 cut(s)	650
MvaI	CCWGG	1 cut(s)	680
MwoI	GCNNNNNNNGC	3 cut(s)	218, 335, 569
NlaIII	CATG	2 cut(s)	77, 798
NlaIV	GGNNCC	2 cut(s)	171, 463
NmeAIII	GCCGAG	1 cut(s)	771
NsiI	ATGCAT	1 cut(s)	652
PaeR7I	CTCGAG	2 cut(s)	49, 781
PagI	TCATGA	1 cut(s)	794
PceI	AGGCCT	2 cut(s)	212, 683
PctI	GAATGC	1 cut(s)	650
PfeI	GAWTC	3 cut(s)	229, 383, 536
PinAI	ACCGGT	1 cut(s)	498
PkrI	GCNGC	4 cut(s)	220, 328, 617, 744
PshBI	ATTAAT	1 cut(s)	267
Psp124BI	GAGCTC	1 cut(s)	788
Psp6I	CCWGG	1 cut(s)	678
PspGI	CCWGG	1 cut(s)	678
PspN4I	GGNNCC	2 cut(s)	171, 463
PspXI	VCTCGAGB	2 cut(s)	49, 781
PvuII	CAGCTG	1 cut(s)	615
RseI	CAYNNNNRTG	2 cut(s)	470, 793
SacI	GAGCTC	1 cut(s)	788
SaqAI	TTAA	3 cut(s)	18, 165, 267
SatI	GCNGC	4 cut(s)	219, 327, 616, 743
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	3 cut(s)	100, 303, 788
SfaNI	GCATC	6 cut(s)	364, 403, 488, 625, 631, 637
SfcI	CTRYAG	1 cut(s)	339
Sfr274I	CTCGAG	2 cut(s)	49, 781
SlaI	CTCGAG	2 cut(s)	49, 781
SmiMI	CAYNNNNRTG	2 cut(s)	470, 793
SmlI	CTYRAG	4 cut(s)	49, 79, 685, 781
SmoI	CTYRAG	4 cut(s)	49, 79, 685, 781
Sse9I	AATT	1 cut(s)	264
SseBI	AGGCCT	2 cut(s)	212, 683
SsiI	CCGC	4 cut(s)	111, 218, 327, 757
SspMI	CTAG	2 cut(s)	380, 387
SstI	GAGCTC	1 cut(s)	788
StuI	AGGCCT	2 cut(s)	212, 683
StyD4I	CCNGG	1 cut(s)	678
StyI	CCWWGG	2 cut(s)	213, 576
TaaI	ACNGT	3 cut(s)	14, 236, 343
TaqI	TCGA	4 cut(s)	50, 60, 774, 782
TasI	AATT	1 cut(s)	264
TauI	GCSGC	2 cut(s)	221, 329
TfiI	GAWTC	3 cut(s)	229, 383, 536
Tru1I	TTAA	3 cut(s)	18, 165, 267
Tru9I	TTAA	3 cut(s)	18, 165, 267
TscAI	CASTG	3 cut(s)	241, 313, 451
TseI	GCWGC	2 cut(s)	615, 742
TspDTI	ATGAA	2 cut(s)	21, 435
TspGWI	ACGGA	1 cut(s)	472
TspRI	CASTG	3 cut(s)	241, 313, 451
VspI	ATTAAT	1 cut(s)	267
XagI	CCTNNNNNAGG	1 cut(s)	701
XhoI	CTCGAG	2 cut(s)	49, 781
XspI	CTAG	2 cut(s)	380, 387
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.