Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8416583.1

Orthogroup ID

OG0006679

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 341

Gene Structure 341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8416583.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atggcgttttatagctttgactcaaatcccacaatcgggtcggaccattctagccttttcaacccgtttacgcttcatgggtcgggtggtggtttgacaaacgggtctgtgcagcttcttccacactctttggtgttggacagtgagaaaggtgagcttgttaaagctccagctagagtgggaaagaagtgtgtttcagaagccaaggctttggcggctttgaagaatcacagtgaggctgagaggaggaggagagagagaatcaatgcacatctctctactcttcgtggacttgttccccgcaatgaaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

104

Amino Acids

11.28

Weight (kDa)

9.8

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56770
fragaria_vesca	FvH4_3g07920
malus_domestica	MD05G1302400.v1.1 MD10G1281100.v1.1
prunus_persica	Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1
pyrus_communis	pycom05g28000 pycom10g23470
rosa_chinensis	RchiOBHm_Chr5g0010631
rosa_laevigata	RLG00000031767
rosa_multiflora	Rmu_co8416583.1_g000001 Rmu_sc0006103.1_g000001 Rmu_sc0007421.1_g000012 Rmu_sc0014635.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065740
rosa_rugosa	Rorug04G0451300 Rorug04G0451300
rosa_samantha	Rh5AG082900 Rh5BG078200 Rh5CG090900 Rh5DG078300
rosa_wichuraiana	Rw0G000690 Rw0G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
AciI	CCGC	2 cut(s)	215, 301
AfiI	CCNNNNNNNGG	2 cut(s)	35, 36
AgsI	TTSAA	2 cut(s)	61, 223
AluBI	AGCT	5 cut(s)	15, 115, 157, 167, 173
AluI	AGCT	5 cut(s)	15, 115, 157, 167, 173
ApeKI	GCWGC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	124
BfaI	CTAG	2 cut(s)	51, 174
BisI	GCNGC	2 cut(s)	113, 216
BlsI	GCNGC	2 cut(s)	114, 217
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 36
Bse3DI	GCAATG	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	35, 36
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	231
BseRI	GAGGAG	3 cut(s)	259, 262, 265
BseXI	GCAGC	1 cut(s)	124
BsgI	GTGCAG	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	35, 36
BspACI	CCGC	2 cut(s)	215, 301
BspCNI	CTCAG	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	143, 233
Bst6I	CTCTTC	1 cut(s)	288
BstDEI	CTNAG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	124
BstXI	CCANNNNNNTGG	1 cut(s)	211
BtsIMutI	CAGTG	2 cut(s)	148, 238
Cfr13I	GGNCC	1 cut(s)	43
CspCI	CAANNNNNGTGG	2 cut(s)	111, 146
CviAII	CATG	1 cut(s)	77
DdeI	CTNAG	1 cut(s)	240
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	1 cut(s)	80
FaiI	YATR	2 cut(s)	12, 78
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FatI	CATG	1 cut(s)	76
FauI	CCCGC	1 cut(s)	308
Fnu4HI	GCNGC	2 cut(s)	113, 216
Fsp4HI	GCNGC	2 cut(s)	113, 216
FspBI	CTAG	2 cut(s)	51, 174
GluI	GCNGC	2 cut(s)	113, 216
GsuI	CTGGAG	1 cut(s)	153
Hin1II	CATG	1 cut(s)	80
HinfI	GANTC	3 cut(s)	20, 226, 261
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	2 cut(s)	69, 290
Hpy188I	TCNGA	2 cut(s)	43, 199
Hpy8I	GTNNAC	2 cut(s)	69, 290
HpyCH4III	ACNGT	2 cut(s)	143, 233
HpyCH4V	TGCA	2 cut(s)	112, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	1 cut(s)	183
Lsp1109I	GCAGC	1 cut(s)	124
MaeI	CTAG	2 cut(s)	51, 174
MboII	GAAGA	3 cut(s)	110, 235, 275
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	2 cut(s)	21, 117
MnlI	CCTC	4 cut(s)	229, 237, 240, 243
MseI	TTAA	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	215
NlaIII	CATG	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	226, 261
PkrI	GCNGC	2 cut(s)	114, 217
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	2 cut(s)	113, 216
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	14
SetI	ASST	6 cut(s)	17, 117, 154, 159, 169, 175
SinI	GGWCC	1 cut(s)	43
SsiI	CCGC	2 cut(s)	215, 301
SspMI	CTAG	2 cut(s)	51, 174
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	143, 233
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	2 cut(s)	226, 261
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	2 cut(s)	148, 238
TseI	GCWGC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	65
TspRI	CASTG	2 cut(s)	148, 238
VpaK11BI	GGWCC	1 cut(s)	43
XspI	CTAG	2 cut(s)	51, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.