Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014635.1

Orthogroup ID

OG0006679

Physical Location & Seq

Genomic Coordinates Reverse (-)

21287 .. 24346

Gene Structure 3060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014635.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atggcgttttatagctttgactcaaatcccacaatcgggtcggaccattctagccttttcaacccgtttacgcttcatgggtcgggtggtggtttgacaaacgggtctgtgcagcttcttccacactctttggtgttggacagtgagaaaggtgagcttgttaaagctccagctagagtgggaaagaagtgtgtttcagaagccaaggctttggcggctttgaagaatcacagtgaggctgagaggaggaggagagagagaatcaatgcacatctctctactcttcgtggacttgttccccgcaatgaaaagatggacaaagctgcattacttgctgaagttatccgccaagtcaaagaacttaagaaggattccctagaatccagcaagggttttctcattccaattgatgccgatgaagtaaaggttgaacactatgacagtggggtaggagatggaatcatatctgtgagggcatccatctgctgtgagtaccgctctgagcttctctctgacctaaaagaagcgcttgattcccttcacttgaaaatggtgaaggcagaaatggcaaccttgggaaaccgagtgcacaatgtatttgttttgacaggctacaacaagggaaacaacaatgctgaggcataccaactccttgcaagttctgtccaccatgccctgagttctgtccttgataaggcctcaatctcgcctgaatactctccaagaacaacgctgccaactaaaagacgaaggacctcttacttcgatacctcgagctcatcctcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

262

Amino Acids

28.64

Weight (kDa)

8.86

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56770
fragaria_vesca	FvH4_3g07920
malus_domestica	MD05G1302400.v1.1 MD10G1281100.v1.1
prunus_persica	Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1 Prupe.4G060000_v2.0.a1
pyrus_communis	pycom05g28000 pycom10g23470
rosa_chinensis	RchiOBHm_Chr5g0010631
rosa_laevigata	RLG00000031767
rosa_multiflora	Rmu_co8416583.1_g000001 Rmu_sc0006103.1_g000001 Rmu_sc0007421.1_g000012 Rmu_sc0014635.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065740
rosa_rugosa	Rorug04G0451300 Rorug04G0451300
rosa_samantha	Rh5AG082900 Rh5BG078200 Rh5CG090900 Rh5DG078300
rosa_wichuraiana	Rw0G000690 Rw0G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
AccBSI	CCGCTC	1 cut(s)	498
AciI	CCGC	4 cut(s)	215, 301, 346, 496
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	1 cut(s)	494
AfeI	AGCGCT	1 cut(s)	528
AfiI	CCNNNNNNNGG	3 cut(s)	35, 36, 694
AflII	CTTAAG	1 cut(s)	362
AgsI	TTSAA	4 cut(s)	61, 223, 431, 547
AluBI	AGCT	8 cut(s)	15, 115, 157, 167, 173, 323, 505, 777
AluI	AGCT	8 cut(s)	15, 115, 157, 167, 173, 323, 505, 777
Alw21I	GWGCWC	2 cut(s)	591, 779
Alw44I	GTGCAC	1 cut(s)	587
Ama87I	CYCGRG	1 cut(s)	772
Aor51HI	AGCGCT	1 cut(s)	528
AoxI	GGCC	1 cut(s)	696
ApaLI	GTGCAC	1 cut(s)	587
ApeKI	GCWGC	3 cut(s)	112, 323, 733
AspLEI	GCGC	1 cut(s)	529
AspS9I	GGNCC	2 cut(s)	43, 753
AsuHPI	GGTGA	2 cut(s)	164, 565
AvaI	CYCGRG	1 cut(s)	772
AvaII	GGWCC	2 cut(s)	43, 753
BaeGI	GKGCMC	1 cut(s)	591
BanII	GRGCYC	1 cut(s)	779
Bbv12I	GWGCWC	2 cut(s)	591, 779
BbvCI	CCTCAGC	1 cut(s)	636
BbvI	GCAGC	3 cut(s)	124, 310, 720
BccI	CCATC	3 cut(s)	307, 449, 488
BfaI	CTAG	3 cut(s)	51, 174, 377
BfoI	RGCGCY	1 cut(s)	530
BfrI	CTTAAG	1 cut(s)	362
BisI	GCNGC	4 cut(s)	113, 216, 324, 734
BlsI	GCNGC	4 cut(s)	114, 217, 325, 735
Bme18I	GGWCC	2 cut(s)	43, 753
BmeT110I	CYCGRG	1 cut(s)	772
BmgT120I	GGNCC	2 cut(s)	43, 753
BmsI	GCATC	2 cut(s)	400, 485
BplI	GAGNNNNNCTC	4 cut(s)	482, 514, 494, 526
BpmI	CTGGAG	1 cut(s)	153
Bpu10I	CCTNAGC	1 cut(s)	636
BsaJI	CCNNGG	2 cut(s)	204, 573
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 36, 694
Bse3DI	GCAATG	1 cut(s)	310
BseDI	CCNNGG	2 cut(s)	204, 573
BseGI	GGATG	2 cut(s)	476, 779
BseLI	CCNNNNNNNGG	3 cut(s)	35, 36, 694
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	4 cut(s)	231, 492, 627, 668
BseRI	GAGGAG	3 cut(s)	259, 262, 265
BseSI	GKGCMC	1 cut(s)	591
BseXI	GCAGC	3 cut(s)	124, 310, 720
BsgI	GTGCAG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	698
BsiHKAI	GWGCWC	2 cut(s)	591, 779
BsiHKCI	CYCGRG	1 cut(s)	772
BslI	CCNNNNNNNGG	3 cut(s)	35, 36, 694
BsnI	GGCC	1 cut(s)	698
BsoBI	CYCGRG	1 cut(s)	772
Bsp1286I	GDGCHC	2 cut(s)	591, 779
BspACI	CCGC	4 cut(s)	215, 301, 346, 496
BspANI	GGCC	1 cut(s)	698
BspCNI	CTCAG	4 cut(s)	232, 493, 628, 669
BspHI	TCATGA	1 cut(s)	785
BspTI	CTTAAG	1 cut(s)	362
BsrBI	CCGCTC	1 cut(s)	498
BsrDI	GCAATG	1 cut(s)	310
BssECI	CCNNGG	2 cut(s)	204, 573
BssT1I	CCWWGG	2 cut(s)	204, 573
Bst4CI	ACNGT	3 cut(s)	143, 233, 443
Bst6I	CTCTTC	1 cut(s)	288
BstAFI	CTTAAG	1 cut(s)	362
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstDEI	CTNAG	4 cut(s)	240, 501, 636, 677
BstENI	CCTNNNNNAGG	1 cut(s)	692
BstF5I	GGATG	2 cut(s)	476, 779
BstH2I	RGCGCY	1 cut(s)	530
BstHHI	GCGC	1 cut(s)	529
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 332, 566
BstSLI	GKGCMC	1 cut(s)	591
BstV1I	GCAGC	3 cut(s)	124, 310, 720
BstXI	CCANNNNNNTGG	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	698
BtsCI	GGATG	2 cut(s)	476, 779
BtsIMutI	CAGTG	3 cut(s)	148, 238, 448
CciI	TCATGA	1 cut(s)	785
CfoI	GCGC	1 cut(s)	529
Cfr13I	GGNCC	2 cut(s)	43, 753
Csp6I	GTAC	1 cut(s)	493
CspCI	CAANNNNNGTGG	2 cut(s)	111, 146
CviAII	CATG	3 cut(s)	77, 671, 786
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	4 cut(s)	240, 501, 636, 677
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
EciI	GGCGGA	1 cut(s)	335
Ecl136II	GAGCTC	1 cut(s)	777
Eco130I	CCWWGG	2 cut(s)	204, 573
Eco147I	AGGCCT	1 cut(s)	698
Eco24I	GRGCYC	1 cut(s)	779
Eco47I	GGWCC	2 cut(s)	43, 753
Eco47III	AGCGCT	1 cut(s)	528
Eco53kI	GAGCTC	1 cut(s)	777
Eco57I	CTGAAG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	772
EcoICRI	GAGCTC	1 cut(s)	777
EcoNI	CCTNNNNNAGG	1 cut(s)	692
EcoO109I	RGGNCCY	1 cut(s)	753
EcoT14I	CCWWGG	2 cut(s)	204, 573
EcoT38I	GRGCYC	1 cut(s)	779
ErhI	CCWWGG	2 cut(s)	204, 573
FaeI	CATG	3 cut(s)	80, 674, 789
FaiI	YATR	7 cut(s)	12, 78, 438, 464, 643, 672, 787
FalI	AAGNNNNNCTT	6 cut(s)	141, 173, 513, 545, 742, 774
FatI	CATG	3 cut(s)	76, 670, 785
FauI	CCCGC	1 cut(s)	308
Fnu4HI	GCNGC	4 cut(s)	113, 216, 324, 734
FokI	GGATG	2 cut(s)	463, 766
FriOI	GRGCYC	1 cut(s)	779
Fsp4HI	GCNGC	4 cut(s)	113, 216, 324, 734
FspBI	CTAG	3 cut(s)	51, 174, 377
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	4 cut(s)	113, 216, 324, 734
GsuI	CTGGAG	1 cut(s)	153
HaeII	RGCGCY	1 cut(s)	530
HaeIII	GGCC	1 cut(s)	698
HhaI	GCGC	1 cut(s)	529
Hin1II	CATG	3 cut(s)	80, 674, 789
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HinfI	GANTC	7 cut(s)	20, 226, 261, 371, 380, 459, 533
HphI	GGTGA	2 cut(s)	164, 565
Hpy166II	GTNNAC	4 cut(s)	69, 290, 589, 667
Hpy188I	TCNGA	4 cut(s)	43, 199, 502, 514
Hpy188III	TCNNGA	1 cut(s)	786
Hpy8I	GTNNAC	4 cut(s)	69, 290, 589, 667
HpyAV	CCTTC	4 cut(s)	361, 548, 550, 744
HpyCH4III	ACNGT	3 cut(s)	143, 233, 443
HpyCH4V	TGCA	5 cut(s)	112, 269, 326, 589, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 332, 566
HpyF3I	CTNAG	4 cut(s)	240, 501, 636, 677
Hsp92II	CATG	3 cut(s)	80, 674, 789
HspAI	GCGC	1 cut(s)	527
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	5 cut(s)	183, 397, 594, 689, 723
Lsp1109I	GCAGC	3 cut(s)	124, 310, 720
LweI	GCATC	2 cut(s)	400, 485
MaeI	CTAG	3 cut(s)	51, 174, 377
MbiI	CCGCTC	1 cut(s)	498
MboII	GAAGA	3 cut(s)	110, 235, 275
MfeI	CAATTG	1 cut(s)	405
MhlI	GDGCHC	2 cut(s)	591, 779
MluCI	AATT	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	2 cut(s)	21, 117
MnlI	CCTC	9 cut(s)	229, 237, 240, 243, 465, 631, 709, 766, 781
MseI	TTAA	2 cut(s)	162, 363
MslI	CAYNNNNRTG	2 cut(s)	467, 784
MspCI	CTTAAG	1 cut(s)	362
MunI	CAATTG	1 cut(s)	405
MwoI	GCNNNNNNNGC	3 cut(s)	215, 332, 566
NlaIII	CATG	3 cut(s)	80, 674, 789
PaeR7I	CTCGAG	1 cut(s)	772
PagI	TCATGA	1 cut(s)	785
PceI	AGGCCT	1 cut(s)	698
PfeI	GAWTC	6 cut(s)	226, 261, 371, 380, 459, 533
PkrI	GCNGC	4 cut(s)	114, 217, 325, 735
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PpuMI	RGGWCCY	1 cut(s)	753
Psp124BI	GAGCTC	1 cut(s)	779
Psp5II	RGGWCCY	1 cut(s)	753
PspPI	GGNCC	2 cut(s)	43, 753
PspPPI	RGGWCCY	1 cut(s)	753
PspXI	VCTCGAGB	1 cut(s)	772
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
RseI	CAYNNNNRTG	2 cut(s)	467, 784
SacI	GAGCTC	1 cut(s)	779
SaqAI	TTAA	2 cut(s)	162, 363
SatI	GCNGC	4 cut(s)	113, 216, 324, 734
Sau96I	GGNCC	2 cut(s)	43, 753
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	2 cut(s)	591, 779
SfaNI	GCATC	2 cut(s)	400, 485
Sfr274I	CTCGAG	1 cut(s)	772
SinI	GGWCC	2 cut(s)	43, 753
SlaI	CTCGAG	1 cut(s)	772
SmiMI	CAYNNNNRTG	2 cut(s)	467, 784
SmlI	CTYRAG	2 cut(s)	362, 772
SmoI	CTYRAG	2 cut(s)	362, 772
Sse9I	AATT	1 cut(s)	405
SseBI	AGGCCT	1 cut(s)	698
SsiI	CCGC	4 cut(s)	215, 301, 346, 496
SspMI	CTAG	3 cut(s)	51, 174, 377
SstI	GAGCTC	1 cut(s)	779
StuI	AGGCCT	1 cut(s)	698
StyI	CCWWGG	2 cut(s)	204, 573
TaaI	ACNGT	3 cut(s)	143, 233, 443
TaqI	TCGA	2 cut(s)	765, 773
TasI	AATT	1 cut(s)	405
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	6 cut(s)	226, 261, 371, 380, 459, 533
Tru1I	TTAA	2 cut(s)	162, 363
Tru9I	TTAA	2 cut(s)	162, 363
TscAI	CASTG	3 cut(s)	148, 238, 448
TseI	GCWGC	3 cut(s)	112, 323, 733
TspDTI	ATGAA	3 cut(s)	65, 321, 432
TspRI	CASTG	3 cut(s)	148, 238, 448
Vha464I	CTTAAG	1 cut(s)	362
VneI	GTGCAC	1 cut(s)	587
VpaK11BI	GGWCC	2 cut(s)	43, 753
XagI	CCTNNNNNAGG	1 cut(s)	692
XhoI	CTCGAG	1 cut(s)	772
XspI	CTAG	3 cut(s)	51, 174, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.